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MODERN METHODS FOR CREATION OF GENETIC
VARIABILITY
Modern methods of plant breeding include:
• Mutation Breeding
• Polyploidy Breeding
• Distant Hybridization
• Biotechnological Methods
MUTATION
Mutations are heritable changes in the phenotypes
of organisms.
These changes are the results of chemical changes
at the level of genes.
Such changes are capable of bringing about new
and heritable character variations in crop plants
and such variations can be selected and used for
the establishment of crop varieties with new
characters.
HISTORY
• Hugo de Vries, 1900
• Mutagenic action of X- ray : Muller , 1927 (Nobel Prize,
1946)
• Auerbanch and Robson (1946) – nitrogen mustards
• Mutation breeding in Sweden, USSR, Germany -1927
MUTATION
Spontaneous mutations: Mutations occur in nature
in very low frequency
Induced mutations : The frequency of mutations
can be increased with the help of certain chemical
or physical agents that are called mutagens or
mutagenic agents
Mutator gene : may promote the mutation in other
gene
EFFECTS OF MUTATIONS
• Lethal
• Sub-lethal
• Sub-vital
• Vital
MOLECULAR BASIS OF MUTATIONS
• At the molecular level, induced mutations are changes, additions or
deletions of nitrogen bases. Accordingly, they can be classified into
transitions, transversions and frame shifts.
• Transition mutation is the replacement of one purine with another
purine or one pyrimidine with another pyrimidine. Transversion
mutation is the substitution of a purine by a pyrimidine or vice versa.
Whereas, frame shift mutation is the change in the reading frame of
the gene by the addition or deletion of nitrogen bases.
MUTATION BREEDING
Mutagens can be used to induce
mutations in crop plants and the desirable
variations produced in this way can be
selected. This approach of plant breeding
in which new variations of crops with
desirable characters are developed with
the help of induced mutations is called
mutation breeding.
MUTAGENS AND THEIR MODE OF ACTION
Mutagens are the physical or chemical agents
used to enhance the frequency of mutations:
A. Physical Mutagens
B. Chemical Mutagens
A. Alkylating Agents
B. Base Analogs
C. Acridine Dyes
D. Other chemical mutagens
PHYSICAL MUTAGENS
Types of radiations based on their energy levels:
1. Non-ionizing radiations: Radiations with lower energy
levels are capable of causing excitations at the level of
nitrogen bases of the genetic material and they are called
(UV light)
2. Ionizing radiations: Radiations with high energy level are
capable of causing both excitation and ionization at the
level of nitrogen bases. (X-rays, gamma rays, alpha
particles, beta particles, Fast and thermal neutron)
CHEMICAL MUTAGENS
There are chemicals that are capable of enhancing the
frequency of mutations. The chemical mutagens are mainly
classified into three categories on the basis of their nature of
action.
• Alkylating Agents
• Base Analogues
• Acridine Dyes
ALKYLATING AGENTS
They induce mutations by adding an alkyl group (ethyl or methyl group)
to the nitrogen bases. The major alkylating agents are:
• Ethyl Methane Sulphonate (EMS)
• Methyl Methane Sulphonate (MMS)
• Ethylene Imines (EI) etc.
Since the actions of alkylating agents resemble the actions of radiations
they are known as radiomimetic chemicals.
AT-GC transition and GC-AT transition
BASE ANALOGS
• These are chemicals analogous to nitrogen bases.
They can get incorporated into DNA at the time of
replication and can cause wrong base pairing
resulting in mutations.
• 5-bromo uracil and 2-amino purine are the common
base analogues used as mutagens.
• AT-GC transition
ACRIDINE DYES
• These are chemicals capable of getting inserted between two bases of DNA,
thus leading to addition or deletion of single or a few base pairs at the time
of replication.
• Proflavin and acriflavin are two such examples.
• Frame shift
OTHER CHEMICAL MUTAGENS
• Other chemicals like nitrous acid, hydroxylamine
and sodium azide are also efficient mutagens.
• AT-GC and GC-AT transition
APPLICATIONS OF MUTATION BREEDING
• To develop improved crop varieties
• To induce male sterility
• For the production of haploids
• To create additional genetic variability in F1, and
• To improve the adaptability of crops.
Achievements :
a) Natural mutants :
Rice : GFB 24 – arose as a mutant from Konamani variety Dee – Gee
– Woo – Gen – Arose as a mutant from rice in China
MTU 20 – arose as a mutant from MTU-3
Sorghum Co. 18 – arose as a mutant from Co. 2
Cotton : DB 3-12 from G. heroaccum variety Western 1
b) Induced mutants :
Rice : Jagannath-gamma ray induced mutant from T.141
Wheat : Sarbati Sonora Gamma radiation from Sonora 64
NP 836 mutants, through irradiation from NP 709
Cotton : Indore 2 Induced from Malwa upland 4
MLU 7 gamma ray induced mutant from culture 1143 EE
MLU 10 gamma ray induced mutant from MLU 4
Mustard : Primax whicte (1950)
Summer Pope seed Regina I (1953)
Sugarcane : Co.8152 gamma ray induced mutant from Co. 527
Groundnut : NC 4
Castor : Aruna (NPH1) – Fast neutrons induced mutant from HC 6
POLYPLOIDY BREEDING
In somatic cells, chromosomes are present in homologous pairs whereas
in gametes chromosomes are present in single set. Hence, each organism
has two types of chromosome numbers, the somatic chromosome
number (2n) and the gametic chromosome number (n). However, each
genetic set is formed of either a group of different chromosomes or a
few groups of such chromosomes. Hence in some cases, the gametic set
consists of a few numbers of identical sets. Here, each of such sets
represents a basic set of chromosomes and the number of chromosomes
in such a set can be called the basic chromosome number (x). Hence n
may be equal to x, 2x, 3x etc. When n=x, the organism is diploid, when
n=2x, the organism is a tetraploid and when n=3x, it is a hexaploid (2n =
2x, 4x and 6x respectively). Besides the type of variation, absence or
additional presence of individual chromosomes can also be seen in
organisms. Such variations can be exploited in plant breeding because
they bring about desirable character changes in many cases.
TYPE CHARACTERS
1. EUPLOIDY Numerical changes in the entire genome
(a) Monoploidy Only set of gamete (x)
(b) Haploidy Only the haploid (gametic) set of genomes (n)
(c) Diploidy Two sets of genomes (2x)
(d) Polyploidy More than 2 sets of genomes (3x onwards)
(i) Triploidy 3x
(ii) Tetraploidy 4x
(iii) Pentaploidy 5x
(iv) Hexaploidy 6x
2. ANEUPLOIDY Change in the number of a one or a few chromosomes
(a) Hypoploidy Loss of chromosomes from the diploid set
(i) Monosomy Loss of one chromosome from the diploid set (2n - 1)
(ii) Nullisomy Loss of one chromosome pair from the set (2n - 2)
(b) Hyperploidy Additional presence of chromosomes along with the
diploid set
(i) Trisomy Addition of one chromosome to the set (2n + 1)
(ii) Tetrasomy Addition of one pair of chromosomes (2n + 2)
HAPLOIDY BREEDING
• Haploids can be used in many ways in plant improvement. They are
useful for the development of pure lines and inbred lines and for the
production of aneuploids. Pure lines can be obtained by chromosome
doubling of haploids. Such pure lines can be used as cultivars or
parents in hybridization.
• PRODUCTION OF HAPLOIDS
Haploids originate spontaneously in small numbers. Haploid
production can be induced by inter-specific cross, use of alien
cytoplasm, anther culture, pollination with foreign pollen, use of
irradiated pollen, chemical treatment etc.
Polyploidy = the addition of one or more complete sets of
chromosomes to the original set.
two copies of each autosome = diploid
four copies of each autosome = tetraploid
six copies of each autosome = hexaploid
The gametes of diploids are haploid, those of tertraploids are diploid,
those of hexaploid are triploid, and so on.
Organisms with an odd number of autosomes, e.g., the domestic
banana plant (Musa acuminata), cannot undergo meiosis or reproduce
sexually.
Musa barbisiana (diploid)
Musa acuminata (triploid)
Two main types of polyploidy:
autopolyploidy (genome doubling) =
multiplication of one basic set of
chromosomes
allopolyploidy = the combination of
genetically distinct, but similar
chromosome sets.
Autopolyploids are derived from within a
single species; allopolyploids arise via
hybridization between two species.
25
autopolyploidy
26
allopolyploidy
THE CABBAGE FAMILY: “TRIANGLE OF U”
Black mustard
Chinese cabbage, Bok Choi
Cauliflower, broccoli, kale
QuickTime™ and a
TIFF (Uncompr essed) decompressor
are neededtosee this picture.
rape seed
Indian mustard
Canola-type oil seeds
Collard green,
good for cold
climates
biodiesel
Brassica nigra
Brassica rapa
Brassica olarecea
Brassica carinata Brassica juncea
N=8
N=9 N=10
N=10+8
N=10+9
Brassica napus
BB
AABB
AA
BBCC
AAC
C
N=9+8
CC
picture sources: various www.
PROCEDURE OF MUTATION BREEDING
It includes:
1.Selection of the material
2.Choice of the mutagen
3.Mutagen Treatment
4.Handling of the mutated populations in the case of seed propagated
species
5.Handling of mutated populations in the case of clonally propagated
species
SELECTION OF THE MATERIAL
• The first step in mutation breeding is the decision on the nature
of variations to be induced and the selection of the appropriate
material for mutagen treatment.
• Depending upon the method of propagation, seeds or other
propagules can be selected for treatment.
• For in vitro mutagenesis, callus or similar in vitro material is
selected.
CHOICE OF THE MUTAGEN
Based on the nature of mutation to be induced and the knowledge on
the nature of action of the mutagen, the appropriate mutagen is
selected.
Generally, chemicals are preferred for the seed treatment and radiations
are preferred for vegetative propagules, pollen etc.
MUTAGEN TREATMENT
• In the case of chemical treatment, presoaking materials in water or
solutions of some other chemicals enhance the effect of mutagens. This
is called pre-treatment.
• Later, the materials are transferred into the solutions of the mutagen.
• A concentration close to LD50 of the mutagen is considered optimum.
• In the case of physical mutagens, the source of the mutagen is kept at a
safe distance and the treatment is remotely controlled. Gamma ray
treatment is carried out in protected experimental areas known as
gamma gardens.
• The duration of treatment is also decided based on the information
available.
• LD50 is the dose of the mutagen that causes 50 percent mortality of the
treated material (any mutagen is toxic to biological systems and it may
cause considerable death and deformities.
HANDLING OF THE MUTATED POPULATIONS IN THE
CASE OF SEED PROPAGATED SPECIES
• All the germinated seeds are grown to produce the M1 population.
Generally the mutations will be recessive and most of them can be
selected only in later generations. However, dominant mutations and
pseudo-dominant mutations can be selected in the M1 itself. The M1
plants are selfed and the seeds are harvested separately. The M2
generation is raised from the seeds collected from the M1 generation.
Oligogenic mutations can be selected at this level. Their seeds are grown
separately and desirable mutants isolated after necessary trials. Superior
and desirable M2 plants are selected and M3 seeds are collected. M3
progenies are raised from the seeds and they are evaluated for breeding
behavior. The seeds of true breeding progenies are bulked together to
conduct yield trials. Preliminary yield trials are conducted in the M4. Co-
ordinated yield trials are carried out from M5 onwards. By M8 or M9, the
most promising lines are selected and released.
• In the case of polygenic traits, inferior plants are rejected at M3 and M4
levels and based on screening tests, the remaining seeds are bulked and
HANDLING OF MUTATED POPULATIONS IN THE CASE
OF CLONALLY PROPAGATED SPECIES
• In vegetatively propagated species, mutations are expressed as
chimeras. Chimeras are combinations of genetically different
tissues.
• In the case of vegetatively propagated crops, the generation
raised from the treated propagules is called the VM1 generation.
• Plants showing chimeras can be selected and propagated to
produce the VM2 generation. Solid mutants are identified and
selected in VM2.
• In VM3, the mutations identified in VM2 are confirmed.
Preliminary yield trials are carried out in VM4 and coordinated
trials from VM5 onwards. By VM9 the best line is released as a
new variety.

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mutation breeding.ppt

  • 1. MODERN METHODS FOR CREATION OF GENETIC VARIABILITY Modern methods of plant breeding include: • Mutation Breeding • Polyploidy Breeding • Distant Hybridization • Biotechnological Methods
  • 2. MUTATION Mutations are heritable changes in the phenotypes of organisms. These changes are the results of chemical changes at the level of genes. Such changes are capable of bringing about new and heritable character variations in crop plants and such variations can be selected and used for the establishment of crop varieties with new characters.
  • 3. HISTORY • Hugo de Vries, 1900 • Mutagenic action of X- ray : Muller , 1927 (Nobel Prize, 1946) • Auerbanch and Robson (1946) – nitrogen mustards • Mutation breeding in Sweden, USSR, Germany -1927
  • 4. MUTATION Spontaneous mutations: Mutations occur in nature in very low frequency Induced mutations : The frequency of mutations can be increased with the help of certain chemical or physical agents that are called mutagens or mutagenic agents Mutator gene : may promote the mutation in other gene
  • 5. EFFECTS OF MUTATIONS • Lethal • Sub-lethal • Sub-vital • Vital
  • 6. MOLECULAR BASIS OF MUTATIONS • At the molecular level, induced mutations are changes, additions or deletions of nitrogen bases. Accordingly, they can be classified into transitions, transversions and frame shifts. • Transition mutation is the replacement of one purine with another purine or one pyrimidine with another pyrimidine. Transversion mutation is the substitution of a purine by a pyrimidine or vice versa. Whereas, frame shift mutation is the change in the reading frame of the gene by the addition or deletion of nitrogen bases.
  • 7.
  • 8. MUTATION BREEDING Mutagens can be used to induce mutations in crop plants and the desirable variations produced in this way can be selected. This approach of plant breeding in which new variations of crops with desirable characters are developed with the help of induced mutations is called mutation breeding.
  • 9. MUTAGENS AND THEIR MODE OF ACTION Mutagens are the physical or chemical agents used to enhance the frequency of mutations: A. Physical Mutagens B. Chemical Mutagens A. Alkylating Agents B. Base Analogs C. Acridine Dyes D. Other chemical mutagens
  • 10. PHYSICAL MUTAGENS Types of radiations based on their energy levels: 1. Non-ionizing radiations: Radiations with lower energy levels are capable of causing excitations at the level of nitrogen bases of the genetic material and they are called (UV light) 2. Ionizing radiations: Radiations with high energy level are capable of causing both excitation and ionization at the level of nitrogen bases. (X-rays, gamma rays, alpha particles, beta particles, Fast and thermal neutron)
  • 11. CHEMICAL MUTAGENS There are chemicals that are capable of enhancing the frequency of mutations. The chemical mutagens are mainly classified into three categories on the basis of their nature of action. • Alkylating Agents • Base Analogues • Acridine Dyes
  • 12. ALKYLATING AGENTS They induce mutations by adding an alkyl group (ethyl or methyl group) to the nitrogen bases. The major alkylating agents are: • Ethyl Methane Sulphonate (EMS) • Methyl Methane Sulphonate (MMS) • Ethylene Imines (EI) etc. Since the actions of alkylating agents resemble the actions of radiations they are known as radiomimetic chemicals. AT-GC transition and GC-AT transition
  • 13. BASE ANALOGS • These are chemicals analogous to nitrogen bases. They can get incorporated into DNA at the time of replication and can cause wrong base pairing resulting in mutations. • 5-bromo uracil and 2-amino purine are the common base analogues used as mutagens. • AT-GC transition
  • 14. ACRIDINE DYES • These are chemicals capable of getting inserted between two bases of DNA, thus leading to addition or deletion of single or a few base pairs at the time of replication. • Proflavin and acriflavin are two such examples. • Frame shift
  • 15. OTHER CHEMICAL MUTAGENS • Other chemicals like nitrous acid, hydroxylamine and sodium azide are also efficient mutagens. • AT-GC and GC-AT transition
  • 16. APPLICATIONS OF MUTATION BREEDING • To develop improved crop varieties • To induce male sterility • For the production of haploids • To create additional genetic variability in F1, and • To improve the adaptability of crops.
  • 17. Achievements : a) Natural mutants : Rice : GFB 24 – arose as a mutant from Konamani variety Dee – Gee – Woo – Gen – Arose as a mutant from rice in China MTU 20 – arose as a mutant from MTU-3 Sorghum Co. 18 – arose as a mutant from Co. 2 Cotton : DB 3-12 from G. heroaccum variety Western 1 b) Induced mutants : Rice : Jagannath-gamma ray induced mutant from T.141 Wheat : Sarbati Sonora Gamma radiation from Sonora 64 NP 836 mutants, through irradiation from NP 709 Cotton : Indore 2 Induced from Malwa upland 4 MLU 7 gamma ray induced mutant from culture 1143 EE MLU 10 gamma ray induced mutant from MLU 4 Mustard : Primax whicte (1950) Summer Pope seed Regina I (1953) Sugarcane : Co.8152 gamma ray induced mutant from Co. 527 Groundnut : NC 4 Castor : Aruna (NPH1) – Fast neutrons induced mutant from HC 6
  • 18.
  • 19. POLYPLOIDY BREEDING In somatic cells, chromosomes are present in homologous pairs whereas in gametes chromosomes are present in single set. Hence, each organism has two types of chromosome numbers, the somatic chromosome number (2n) and the gametic chromosome number (n). However, each genetic set is formed of either a group of different chromosomes or a few groups of such chromosomes. Hence in some cases, the gametic set consists of a few numbers of identical sets. Here, each of such sets represents a basic set of chromosomes and the number of chromosomes in such a set can be called the basic chromosome number (x). Hence n may be equal to x, 2x, 3x etc. When n=x, the organism is diploid, when n=2x, the organism is a tetraploid and when n=3x, it is a hexaploid (2n = 2x, 4x and 6x respectively). Besides the type of variation, absence or additional presence of individual chromosomes can also be seen in organisms. Such variations can be exploited in plant breeding because they bring about desirable character changes in many cases.
  • 20. TYPE CHARACTERS 1. EUPLOIDY Numerical changes in the entire genome (a) Monoploidy Only set of gamete (x) (b) Haploidy Only the haploid (gametic) set of genomes (n) (c) Diploidy Two sets of genomes (2x) (d) Polyploidy More than 2 sets of genomes (3x onwards) (i) Triploidy 3x (ii) Tetraploidy 4x (iii) Pentaploidy 5x (iv) Hexaploidy 6x 2. ANEUPLOIDY Change in the number of a one or a few chromosomes (a) Hypoploidy Loss of chromosomes from the diploid set (i) Monosomy Loss of one chromosome from the diploid set (2n - 1) (ii) Nullisomy Loss of one chromosome pair from the set (2n - 2) (b) Hyperploidy Additional presence of chromosomes along with the diploid set (i) Trisomy Addition of one chromosome to the set (2n + 1) (ii) Tetrasomy Addition of one pair of chromosomes (2n + 2)
  • 21. HAPLOIDY BREEDING • Haploids can be used in many ways in plant improvement. They are useful for the development of pure lines and inbred lines and for the production of aneuploids. Pure lines can be obtained by chromosome doubling of haploids. Such pure lines can be used as cultivars or parents in hybridization. • PRODUCTION OF HAPLOIDS Haploids originate spontaneously in small numbers. Haploid production can be induced by inter-specific cross, use of alien cytoplasm, anther culture, pollination with foreign pollen, use of irradiated pollen, chemical treatment etc.
  • 22. Polyploidy = the addition of one or more complete sets of chromosomes to the original set. two copies of each autosome = diploid four copies of each autosome = tetraploid six copies of each autosome = hexaploid The gametes of diploids are haploid, those of tertraploids are diploid, those of hexaploid are triploid, and so on. Organisms with an odd number of autosomes, e.g., the domestic banana plant (Musa acuminata), cannot undergo meiosis or reproduce sexually. Musa barbisiana (diploid) Musa acuminata (triploid)
  • 23. Two main types of polyploidy: autopolyploidy (genome doubling) = multiplication of one basic set of chromosomes allopolyploidy = the combination of genetically distinct, but similar chromosome sets. Autopolyploids are derived from within a single species; allopolyploids arise via hybridization between two species.
  • 26. THE CABBAGE FAMILY: “TRIANGLE OF U” Black mustard Chinese cabbage, Bok Choi Cauliflower, broccoli, kale QuickTime™ and a TIFF (Uncompr essed) decompressor are neededtosee this picture. rape seed Indian mustard Canola-type oil seeds Collard green, good for cold climates biodiesel Brassica nigra Brassica rapa Brassica olarecea Brassica carinata Brassica juncea N=8 N=9 N=10 N=10+8 N=10+9 Brassica napus BB AABB AA BBCC AAC C N=9+8 CC picture sources: various www.
  • 27.
  • 28.
  • 29. PROCEDURE OF MUTATION BREEDING It includes: 1.Selection of the material 2.Choice of the mutagen 3.Mutagen Treatment 4.Handling of the mutated populations in the case of seed propagated species 5.Handling of mutated populations in the case of clonally propagated species
  • 30. SELECTION OF THE MATERIAL • The first step in mutation breeding is the decision on the nature of variations to be induced and the selection of the appropriate material for mutagen treatment. • Depending upon the method of propagation, seeds or other propagules can be selected for treatment. • For in vitro mutagenesis, callus or similar in vitro material is selected.
  • 31. CHOICE OF THE MUTAGEN Based on the nature of mutation to be induced and the knowledge on the nature of action of the mutagen, the appropriate mutagen is selected. Generally, chemicals are preferred for the seed treatment and radiations are preferred for vegetative propagules, pollen etc.
  • 32. MUTAGEN TREATMENT • In the case of chemical treatment, presoaking materials in water or solutions of some other chemicals enhance the effect of mutagens. This is called pre-treatment. • Later, the materials are transferred into the solutions of the mutagen. • A concentration close to LD50 of the mutagen is considered optimum. • In the case of physical mutagens, the source of the mutagen is kept at a safe distance and the treatment is remotely controlled. Gamma ray treatment is carried out in protected experimental areas known as gamma gardens. • The duration of treatment is also decided based on the information available. • LD50 is the dose of the mutagen that causes 50 percent mortality of the treated material (any mutagen is toxic to biological systems and it may cause considerable death and deformities.
  • 33. HANDLING OF THE MUTATED POPULATIONS IN THE CASE OF SEED PROPAGATED SPECIES • All the germinated seeds are grown to produce the M1 population. Generally the mutations will be recessive and most of them can be selected only in later generations. However, dominant mutations and pseudo-dominant mutations can be selected in the M1 itself. The M1 plants are selfed and the seeds are harvested separately. The M2 generation is raised from the seeds collected from the M1 generation. Oligogenic mutations can be selected at this level. Their seeds are grown separately and desirable mutants isolated after necessary trials. Superior and desirable M2 plants are selected and M3 seeds are collected. M3 progenies are raised from the seeds and they are evaluated for breeding behavior. The seeds of true breeding progenies are bulked together to conduct yield trials. Preliminary yield trials are conducted in the M4. Co- ordinated yield trials are carried out from M5 onwards. By M8 or M9, the most promising lines are selected and released. • In the case of polygenic traits, inferior plants are rejected at M3 and M4 levels and based on screening tests, the remaining seeds are bulked and
  • 34. HANDLING OF MUTATED POPULATIONS IN THE CASE OF CLONALLY PROPAGATED SPECIES • In vegetatively propagated species, mutations are expressed as chimeras. Chimeras are combinations of genetically different tissues. • In the case of vegetatively propagated crops, the generation raised from the treated propagules is called the VM1 generation. • Plants showing chimeras can be selected and propagated to produce the VM2 generation. Solid mutants are identified and selected in VM2. • In VM3, the mutations identified in VM2 are confirmed. Preliminary yield trials are carried out in VM4 and coordinated trials from VM5 onwards. By VM9 the best line is released as a new variety.