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Method of improving quality of crops
Swarnalata Joardar
14HMPG07
M. Pharm, 1st year
Department of Pharmacognosy
Himalayan Pharmacy Institute
Increased crop yield is required for food security
Changing climate is the major obstacle
Conventional methods of plant breeding is age-old technique
Modern techniques are designed with the help of modern
scientific tools
Introduction
10/20/20152
What are the modern scientific tools?
Mutation Breeding
Polyploidy Breeding
Hybridization
Biotechnological Methods
10/20/20153
Brief history
Gregor Mendel is consider to be the founder of Modern
Science of Genetics
1856-1863 he established the rules of heredity
He was working with Pisum sativum
He observed 7 distinct traits
10/20/20154
Mutated gene = new species?
Hugo De Vries claimed – if a gene is a changed, it would
create a new species
He chose Drosophila flies for experiment
He tried to create mutant flies by using x-ray, acids and
other toxic chemicals
He concluded – something had spontaneously changed in
the red eyed flies, thus it has changed to white
10/20/20155
What is mutation?
A permanent alteration in the DNA sequence which
results in an unusual sequence, rarely seen
It may involve duplication of large sections of DNA
through genetic recombination
10/20/20156
What are the causes of mutation?
-Spontaneous mutation
Tautomerism
Depurination
Deamination
Slip strand mispairing
-Mutations due to error prone replication by pass of naturally
occurring DNA damage
-Errors introducing during DNA repair
-Induced mutations caused by mutagens
due to chemicals
due to physical agents 10/20/20157
Different types of mutation
By effect on structure
By effect on function
By effect on fitness
By impact on protein sequence
10/20/20158
By effect on structure
Small scale mutation
point mutation
silent mutation
missense mutation
nonsense mutation
insertions
deletions
Large scale mutations
amplifications
deletion of large chromosomal regions
10/20/20159
By effect of fitness
Loss of function
Gain of function
Lethal mutation
10/20/201510
By effect of fitness
A harmful or deleterious mutation
A beneficial or advantageous mutation
A neutral mutation
A nearly neutral mutation
Conditional mutation
10/20/201511
Frameshift mutation
Nonsense mutation
Missense mutation
Neutral mutation
Silent mutation
By impact on protein sequence
10/20/201512
Achievements :
1. Disease resistance for leaf spot, blast disease, leaf
blight in high yielding dwarf variety of paddy IR-8.
2. Jagannadh variety of paddy.
3. Hardiness in Swedish variety of barley.
4. Primex variety of White Mustard.
5. Aruna variety of Castor.
6. Sharbati, Sonor variety of Wheat.
10/20/201513
Limitations of Mutation :
1. Most of the induced mutations are undesirable and
even some are lethal.
2. A large number of plants have to be tested in order to
get desirable mutations.
3. Mutant variety is subjected to prolonged testing in
order to ensure the true breeding nature of mutagenic
trait.
10/20/201514
Polyploidy
Presence of more than two sets of chromosomes in a cell
or organism is known as polyploidy
It is also called numerical mutation
10/20/201515
Variation in chromosome number
TYPE CHARACTERS
EUPLOIDY Numerical changes in the entire genome
(a) Monoploidy Only set of gamete (x)
(b) Haploidy Only the haploid (gametic) set of genomes (n)
(c) Diploidy Two sets of genomes (2x)
(d) Polyploidy More than 2 sets of genomes (3x onwards)
(i) Triploidy 3x
(ii) Tetraploidy 4x
(iii) Pentaploidy 5x
(iv) Hexaploidy 6x 10/20/201516
Variation in chromosome number
TYPE CHARACTERS
ANEUPLOIDY Change in the number of a one or a few chromosomes
(a) Hypoploidy Loss of chromosomes from the diploid set
(i) Monosomy Loss of one chromosome from the diploid set (2n - 1)
(ii) Nullisomy Loss of one chromosome pair from the set (2n - 2)
(b) Hyperploidy Additional presence of chromosomes along with the
diploid set
(i) Trisomy Addition of one chromosome to the set (2n + 1)
(ii) Tetrasomy Addition of one pair of chromosomes (2n + 2)
10/20/201517
Figure a. the use of colchicine to generate a diploid from a monoploid. Colchicine added to
mitotic cells during metaphase and anaphase disrupts spindle-fibre formation, preventing the
migration of chromatids after the centromere is split. A single cell is created that contains pairs
of identical chromosomes that are homozygous at all loci. 10/20/201518
Figure b. two possibilities for the pairing of three homologous chromosomes before the first
meiotic division in a triploid. Notice that the outcome will be the same in both cases : one
resulting cell will receive two chromosomes and the other will receive just one. The
probability that the latter cell can become a functional haploid gamete is very small,
however, because to do so, it would also have to receive only one of the three homologous
chromosomes of every other set in the organism. 10/20/201519
Figure c. meiotic pairing possibilities in tetraploids. The four homologous
chromosomes may pair as two bivalents or as a quadrivalent. Both possibilities can
yield functional gametes. However, the four chromosomes may also pair in a
univalent-trivalent combination, yielding nonfunctional gametes. A specific
tetraploid can show one or more of these pairings. 10/20/201520
Induction of Polyploidy
Cell generation
Physical agents
Temperature shocks
Centrifugation
X-rays
Chemical agents
10/20/201521
Mechanism of Polyploidy
Cytological Mechanism
Meiotic nuclear restitution
Chromosome doubling
Pre-meiotic or Post-meiotic failure
Chromosomal doubling during meiosis
Polyspermy
10/20/201522
Alternations associated with Polyploidy
Changes in genetic composition
Changes in the physiological mechanism
Structural composition
Vigor
10/20/201523
Figure d. techniques for the production of the amphidiploiod Triticale.
If the hybrid seeds does not germinate, then tissue culture may be used
to obtain a hybrid plant. 10/20/201524
10/20/201525
Aims and Objectives
1. To increase the yield of various types of plant products.
2. To improve the quality of product such as size, shape, color, taste,
nutritional value, storing ability of grains, vegetables, fruits, etc. and many
other features such as high sugar content, high protein content in pulses,
long and fine fiber in fiber crops, fruit size in fruit crops.
3. To develop varieties resistant to diseases, insects, drought, floods, frost,
alkaline and saline conditions.
4. To produce early mature crops for crop rotation purpose.
5. To change the growth habit and agronomic characteristics of plants and to
produce dwarf varieties, winter hardiness in certain situations and tolerance
to moisture and salt stress.
6. Suitability of crops for easy harvesting, adaptability to wide regions are
some of the other objectives.
10/20/201526
Conclusion
The last few years have seen the release of the first genome sequences
for model plant species and the more genetically simple crops.
Exploitation of these sequence data and associated tools for functional
genomics has led to rapid progress in understanding the roles of
individual genes, particularly in plant development and defense
pathogens.
One negative factor is that random mutagenesis is much more likely to
generate loss of function mutations rather than conferring improved or
new properties on the targeted gene and thus will only be an appropriate
strategy in a proportion of cases.
10/20/201527
Reference
Parry MAJ, Madgwick PJ, Bayon C, Tearall K, Hernandez-Lopez A, Baudo M,
Rakszegi M, Hamada W, Al-Yassin A, Ouabbou H, Labhilili M, Philips AL.
mutation discovery for crop improvement. Journal of Experimental Botany. Vol. 60,
No. 10. Advance Access publication. 10 June, 2009. Pp. 2817-2825.
Yang X, Ye CY, Cheng ZM, Tschaplinski TJ, Wullschleger SD, Yin W, Xia X,
Tuskan GA. Genomic aspects of research involving polyploid plants. Plant Cell
Tissue Organ Culture. Vol. 104. 2011. Pp. 387-397.
Chopra VL. Mutagenesis : Investing the process and processing the outcome for
crop improvement. Current Science. Vol.89, No. 2. 25 July, 2005. Pp. 353-359.
Persley GJ, Siedow JN. Applications of Biotechnology to Crops : Benefits and
Risks. Council for Agricultural Science and Technology. Issue Paper No. 12.
December 1999. Pp. 1-8.
http://www.wikipedia.net/Mutagenesis%20-%20PlantBreeding.htm accessed on
14th May, 2015.
10/20/201528
THE END
10/20/2015 29

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MPBT

  • 1. Method of improving quality of crops Swarnalata Joardar 14HMPG07 M. Pharm, 1st year Department of Pharmacognosy Himalayan Pharmacy Institute
  • 2. Increased crop yield is required for food security Changing climate is the major obstacle Conventional methods of plant breeding is age-old technique Modern techniques are designed with the help of modern scientific tools Introduction 10/20/20152
  • 3. What are the modern scientific tools? Mutation Breeding Polyploidy Breeding Hybridization Biotechnological Methods 10/20/20153
  • 4. Brief history Gregor Mendel is consider to be the founder of Modern Science of Genetics 1856-1863 he established the rules of heredity He was working with Pisum sativum He observed 7 distinct traits 10/20/20154
  • 5. Mutated gene = new species? Hugo De Vries claimed – if a gene is a changed, it would create a new species He chose Drosophila flies for experiment He tried to create mutant flies by using x-ray, acids and other toxic chemicals He concluded – something had spontaneously changed in the red eyed flies, thus it has changed to white 10/20/20155
  • 6. What is mutation? A permanent alteration in the DNA sequence which results in an unusual sequence, rarely seen It may involve duplication of large sections of DNA through genetic recombination 10/20/20156
  • 7. What are the causes of mutation? -Spontaneous mutation Tautomerism Depurination Deamination Slip strand mispairing -Mutations due to error prone replication by pass of naturally occurring DNA damage -Errors introducing during DNA repair -Induced mutations caused by mutagens due to chemicals due to physical agents 10/20/20157
  • 8. Different types of mutation By effect on structure By effect on function By effect on fitness By impact on protein sequence 10/20/20158
  • 9. By effect on structure Small scale mutation point mutation silent mutation missense mutation nonsense mutation insertions deletions Large scale mutations amplifications deletion of large chromosomal regions 10/20/20159
  • 10. By effect of fitness Loss of function Gain of function Lethal mutation 10/20/201510
  • 11. By effect of fitness A harmful or deleterious mutation A beneficial or advantageous mutation A neutral mutation A nearly neutral mutation Conditional mutation 10/20/201511
  • 12. Frameshift mutation Nonsense mutation Missense mutation Neutral mutation Silent mutation By impact on protein sequence 10/20/201512
  • 13. Achievements : 1. Disease resistance for leaf spot, blast disease, leaf blight in high yielding dwarf variety of paddy IR-8. 2. Jagannadh variety of paddy. 3. Hardiness in Swedish variety of barley. 4. Primex variety of White Mustard. 5. Aruna variety of Castor. 6. Sharbati, Sonor variety of Wheat. 10/20/201513
  • 14. Limitations of Mutation : 1. Most of the induced mutations are undesirable and even some are lethal. 2. A large number of plants have to be tested in order to get desirable mutations. 3. Mutant variety is subjected to prolonged testing in order to ensure the true breeding nature of mutagenic trait. 10/20/201514
  • 15. Polyploidy Presence of more than two sets of chromosomes in a cell or organism is known as polyploidy It is also called numerical mutation 10/20/201515
  • 16. Variation in chromosome number TYPE CHARACTERS EUPLOIDY Numerical changes in the entire genome (a) Monoploidy Only set of gamete (x) (b) Haploidy Only the haploid (gametic) set of genomes (n) (c) Diploidy Two sets of genomes (2x) (d) Polyploidy More than 2 sets of genomes (3x onwards) (i) Triploidy 3x (ii) Tetraploidy 4x (iii) Pentaploidy 5x (iv) Hexaploidy 6x 10/20/201516
  • 17. Variation in chromosome number TYPE CHARACTERS ANEUPLOIDY Change in the number of a one or a few chromosomes (a) Hypoploidy Loss of chromosomes from the diploid set (i) Monosomy Loss of one chromosome from the diploid set (2n - 1) (ii) Nullisomy Loss of one chromosome pair from the set (2n - 2) (b) Hyperploidy Additional presence of chromosomes along with the diploid set (i) Trisomy Addition of one chromosome to the set (2n + 1) (ii) Tetrasomy Addition of one pair of chromosomes (2n + 2) 10/20/201517
  • 18. Figure a. the use of colchicine to generate a diploid from a monoploid. Colchicine added to mitotic cells during metaphase and anaphase disrupts spindle-fibre formation, preventing the migration of chromatids after the centromere is split. A single cell is created that contains pairs of identical chromosomes that are homozygous at all loci. 10/20/201518
  • 19. Figure b. two possibilities for the pairing of three homologous chromosomes before the first meiotic division in a triploid. Notice that the outcome will be the same in both cases : one resulting cell will receive two chromosomes and the other will receive just one. The probability that the latter cell can become a functional haploid gamete is very small, however, because to do so, it would also have to receive only one of the three homologous chromosomes of every other set in the organism. 10/20/201519
  • 20. Figure c. meiotic pairing possibilities in tetraploids. The four homologous chromosomes may pair as two bivalents or as a quadrivalent. Both possibilities can yield functional gametes. However, the four chromosomes may also pair in a univalent-trivalent combination, yielding nonfunctional gametes. A specific tetraploid can show one or more of these pairings. 10/20/201520
  • 21. Induction of Polyploidy Cell generation Physical agents Temperature shocks Centrifugation X-rays Chemical agents 10/20/201521
  • 22. Mechanism of Polyploidy Cytological Mechanism Meiotic nuclear restitution Chromosome doubling Pre-meiotic or Post-meiotic failure Chromosomal doubling during meiosis Polyspermy 10/20/201522
  • 23. Alternations associated with Polyploidy Changes in genetic composition Changes in the physiological mechanism Structural composition Vigor 10/20/201523
  • 24. Figure d. techniques for the production of the amphidiploiod Triticale. If the hybrid seeds does not germinate, then tissue culture may be used to obtain a hybrid plant. 10/20/201524
  • 26. Aims and Objectives 1. To increase the yield of various types of plant products. 2. To improve the quality of product such as size, shape, color, taste, nutritional value, storing ability of grains, vegetables, fruits, etc. and many other features such as high sugar content, high protein content in pulses, long and fine fiber in fiber crops, fruit size in fruit crops. 3. To develop varieties resistant to diseases, insects, drought, floods, frost, alkaline and saline conditions. 4. To produce early mature crops for crop rotation purpose. 5. To change the growth habit and agronomic characteristics of plants and to produce dwarf varieties, winter hardiness in certain situations and tolerance to moisture and salt stress. 6. Suitability of crops for easy harvesting, adaptability to wide regions are some of the other objectives. 10/20/201526
  • 27. Conclusion The last few years have seen the release of the first genome sequences for model plant species and the more genetically simple crops. Exploitation of these sequence data and associated tools for functional genomics has led to rapid progress in understanding the roles of individual genes, particularly in plant development and defense pathogens. One negative factor is that random mutagenesis is much more likely to generate loss of function mutations rather than conferring improved or new properties on the targeted gene and thus will only be an appropriate strategy in a proportion of cases. 10/20/201527
  • 28. Reference Parry MAJ, Madgwick PJ, Bayon C, Tearall K, Hernandez-Lopez A, Baudo M, Rakszegi M, Hamada W, Al-Yassin A, Ouabbou H, Labhilili M, Philips AL. mutation discovery for crop improvement. Journal of Experimental Botany. Vol. 60, No. 10. Advance Access publication. 10 June, 2009. Pp. 2817-2825. Yang X, Ye CY, Cheng ZM, Tschaplinski TJ, Wullschleger SD, Yin W, Xia X, Tuskan GA. Genomic aspects of research involving polyploid plants. Plant Cell Tissue Organ Culture. Vol. 104. 2011. Pp. 387-397. Chopra VL. Mutagenesis : Investing the process and processing the outcome for crop improvement. Current Science. Vol.89, No. 2. 25 July, 2005. Pp. 353-359. Persley GJ, Siedow JN. Applications of Biotechnology to Crops : Benefits and Risks. Council for Agricultural Science and Technology. Issue Paper No. 12. December 1999. Pp. 1-8. http://www.wikipedia.net/Mutagenesis%20-%20PlantBreeding.htm accessed on 14th May, 2015. 10/20/201528