Mendel observed patterns of inheritance in pea plants through experimentation with traits such as flower color, seed shape, and pod color. His work provided evidence that heritable traits are specified by discrete units (later identified as genes) that are transmitted from parents to offspring in predictable patterns. Through experiments involving one trait (monohybrid crosses) and two traits (dihybrid crosses), Mendel deduced that genes assort and transmit independently during gamete formation and fertilization. Later work showed that traits are influenced not only by genes but also environmental factors and that variations exist in patterns of gene expression and dominance.
Biology 103 Laboratory Exercise – Genetic Problems
Introduction
Although the science of genetics has become a highly sophisticated discipline dealing
with the interactions of hereditary factors at the molecular level, it has its roots in the
basic laws of heredity initially discovered and presented by Gregor Mendel more than
one hundred years ago. Mendel's success in discovering these laws was due largely to his
application of the simple rules of mathematical probability - the laws of chance - to his
observations concerning the inheritance of certain characteristics in the garden pea plant.
Reginald Punnett and the Punnett Square
The Punnett square is a diagram used by biologists to determine genotypic probability
within the offspring from a particular genetic cross. The Punnett square shows every
possible genotypic combination of maternal alleles with the paternal alleles for a genetic
cross. Punnett squares only give probabilities for genotypes, not phenotypes. The square
diagram was designed by the British geneticist, Reginald Punnett (1865-1967) and first
presented to the science community in 1905. Punnett’s Mendelism (1905) is considered
the first popular science book to introduce genetics to the public.
Solving Genetic Problems
R
R'
R
RR RR'
R'
RR' R'R'
Maternal alleles
A
A
a
Aa
Aa
Paternal
Alleles
a
Aa
Aa
The first step in solving a genetic problem is to establish the genetic symbols you will use
in your problem solution. Stay consistent by using these same symbols throughout the
problem solving process.
Represent dominant and recessive alleles (different forms of a gene) using traditional
genetic symbols. Dominant alleles should be represented with the capital version of an
alphabetic letter while using the lower case version to show recessiveness. For example:
B = black color, b = white color.
Each individual gene or trait is diploid (2n) in nature and therefore, must be represented
with two alleles. Continuing with the alleles mentioned previously, an individual may
have the genetic makeup BB, Bb, or bb when using those alleles.
Remember that gametes (sperm and egg) are haploid (n) and can only provide one allele
per trait. For example: B or b
An individual’s genotype contains the possible gametes that can be expected to be
produced by that individual. Much of genetics revolves around the probability of the
makeup of gametes. If the individual is homozygous, all of the gametes produced will
possess the same kind of allele. For example, an individual with the genotype BB would
be expected to produce only B gametes and individuals with genotype bb would produce
only b gametes.
If the individual is heterozygous, that is the individual’s genotype contains one dominant
allele and one recessive allele (Bb), the gametes produced will possess one or the other of
the two forms of the gene – B or b. ...
Biology 103 Laboratory Exercise – Genetic Problems
Introduction
Although the science of genetics has become a highly sophisticated discipline dealing
with the interactions of hereditary factors at the molecular level, it has its roots in the
basic laws of heredity initially discovered and presented by Gregor Mendel more than
one hundred years ago. Mendel's success in discovering these laws was due largely to his
application of the simple rules of mathematical probability - the laws of chance - to his
observations concerning the inheritance of certain characteristics in the garden pea plant.
Reginald Punnett and the Punnett Square
The Punnett square is a diagram used by biologists to determine genotypic probability
within the offspring from a particular genetic cross. The Punnett square shows every
possible genotypic combination of maternal alleles with the paternal alleles for a genetic
cross. Punnett squares only give probabilities for genotypes, not phenotypes. The square
diagram was designed by the British geneticist, Reginald Punnett (1865-1967) and first
presented to the science community in 1905. Punnett’s Mendelism (1905) is considered
the first popular science book to introduce genetics to the public.
Solving Genetic Problems
R
R'
R
RR RR'
R'
RR' R'R'
Maternal alleles
A
A
a
Aa
Aa
Paternal
Alleles
a
Aa
Aa
The first step in solving a genetic problem is to establish the genetic symbols you will use
in your problem solution. Stay consistent by using these same symbols throughout the
problem solving process.
Represent dominant and recessive alleles (different forms of a gene) using traditional
genetic symbols. Dominant alleles should be represented with the capital version of an
alphabetic letter while using the lower case version to show recessiveness. For example:
B = black color, b = white color.
Each individual gene or trait is diploid (2n) in nature and therefore, must be represented
with two alleles. Continuing with the alleles mentioned previously, an individual may
have the genetic makeup BB, Bb, or bb when using those alleles.
Remember that gametes (sperm and egg) are haploid (n) and can only provide one allele
per trait. For example: B or b
An individual’s genotype contains the possible gametes that can be expected to be
produced by that individual. Much of genetics revolves around the probability of the
makeup of gametes. If the individual is homozygous, all of the gametes produced will
possess the same kind of allele. For example, an individual with the genotype BB would
be expected to produce only B gametes and individuals with genotype bb would produce
only b gametes.
If the individual is heterozygous, that is the individual’s genotype contains one dominant
allele and one recessive allele (Bb), the gametes produced will possess one or the other of
the two forms of the gene – B or b. ...
This power point presentation is designed to explain deviation of Mendelian dihybrid ratio due to interaction of genes which may be of following types
1.Two gene pairs affecting same character – 9:3:3:1
2.Epistasis, one gene hides effect of other
a) Recessive Epistasis - 9:3:4
b) Dominant epistasis - 12:3:1
3.Complementary genes - 9:7 ( 2 genes responsible for production of a particular phenotype )
4. Duplicate genes – 15:1 ( same effect given by either of two genes )
5. Polymeric gene action - 9:6:1
6. Inhibitory gene action - 13 : 3
Each interaction is typical in itself and ratios obtained are different
Genetics is a branch of biology concerned with the study of genes, genetic variation, and heredity in organisms. Though heredity had been observed for millennia, Gregor Mendel, Moravian scientist and Augustinian friar working in the 19th century in Brno, was the first to study genetics scientifically. Mendel studied "trait inheritance", patterns in the way traits are handed down from parents to offspring over time. He observed that organisms (pea plants) inherit traits by way of discrete "units of inheritance". This term, still used today, is a somewhat ambiguous definition of what is referred to as a gene.
Trait inheritance and molecular inheritance mechanisms of genes are still primary principles of genetics in the 21st century, but modern genetics has expanded beyond inheritance to studying the function and behavior of genes. Gene structure and function, variation, and distribution are studied within the context of the cell, the organism (e.g. dominance), and within the context of a population. In science and especially in mathematical studies, a variational principle is one that enables a problem to be solved using calculus of variations, which concerns finding functions that optimize the values of quantities that depend on those functions.
This power point presentation is designed to explain deviation of Mendelian dihybrid ratio due to interaction of genes which may be of following types
1.Two gene pairs affecting same character – 9:3:3:1
2.Epistasis, one gene hides effect of other
a) Recessive Epistasis - 9:3:4
b) Dominant epistasis - 12:3:1
3.Complementary genes - 9:7 ( 2 genes responsible for production of a particular phenotype )
4. Duplicate genes – 15:1 ( same effect given by either of two genes )
5. Polymeric gene action - 9:6:1
6. Inhibitory gene action - 13 : 3
Each interaction is typical in itself and ratios obtained are different
Genetics is a branch of biology concerned with the study of genes, genetic variation, and heredity in organisms. Though heredity had been observed for millennia, Gregor Mendel, Moravian scientist and Augustinian friar working in the 19th century in Brno, was the first to study genetics scientifically. Mendel studied "trait inheritance", patterns in the way traits are handed down from parents to offspring over time. He observed that organisms (pea plants) inherit traits by way of discrete "units of inheritance". This term, still used today, is a somewhat ambiguous definition of what is referred to as a gene.
Trait inheritance and molecular inheritance mechanisms of genes are still primary principles of genetics in the 21st century, but modern genetics has expanded beyond inheritance to studying the function and behavior of genes. Gene structure and function, variation, and distribution are studied within the context of the cell, the organism (e.g. dominance), and within the context of a population. In science and especially in mathematical studies, a variational principle is one that enables a problem to be solved using calculus of variations, which concerns finding functions that optimize the values of quantities that depend on those functions.
ISI 2024: Application Form (Extended), Exam Date (Out), EligibilitySciAstra
The Indian Statistical Institute (ISI) has extended its application deadline for 2024 admissions to April 2. Known for its excellence in statistics and related fields, ISI offers a range of programs from Bachelor's to Junior Research Fellowships. The admission test is scheduled for May 12, 2024. Eligibility varies by program, generally requiring a background in Mathematics and English for undergraduate courses and specific degrees for postgraduate and research positions. Application fees are ₹1500 for male general category applicants and ₹1000 for females. Applications are open to Indian and OCI candidates.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
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As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Studia Poinsotiana
I Introduction
II Subalternation and Theology
III Theology and Dogmatic Declarations
IV The Mixed Principles of Theology
V Virtual Revelation: The Unity of Theology
VI Theology as a Natural Science
VII Theology’s Certitude
VIII Conclusion
Notes
Bibliography
All the contents are fully attributable to the author, Doctor Victor Salas. Should you wish to get this text republished, get in touch with the author or the editorial committee of the Studia Poinsotiana. Insofar as possible, we will be happy to broker your contact.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
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We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
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The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
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Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
2. 10.1 Mendel,
Pea Plants, and Inheritance Patterns
• By experimenting with pea plants, Mendel was
the first to gather evidence of patterns by
which parents transmit genes to offspring
4. a Garden pea flower, cut in half. Sperm form in
pollen grains, which originate in male floral parts
(stamens). Eggs develop, fertilization takes place,
and seeds mature in female floral parts (carpels).
b Pollen from a plant that breeds true for purple
flowers is brushed onto a floral bud of a plant that
breeds true for white flowers. The white flower had its
stamens snipped off. This is one way to assure
cross-fertilization of plants.
c Later, seeds develop inside pods of the cross-
fertilized plant. An embryo within each seed
develops into a mature pea plant.
d Each new plant’s flower color is indirect but
observable evidence that hereditary material
has been transmitted from the parent plants.
Fig. 10.3, p.154
carpel stamen
6. Producing Hybrids
• Hybrids
• Offspring of a cross between two individuals that
breed true for different forms of a trait
• Each inherits nonidentical alleles for a trait
being studied
9. Heritable Units of Information
• Genes
• Heritable units of information about traits
• Each has its own locus on the chromosome
• Alleles
• Different molecular forms of the same gene
• Mutation
• Permanent change in a gene’s information
11. b A gene locus (plural, loci), the location
for a specific gene on a chromosome.
Alleles are at corresponding loci on a
pair of homologous chromosomes
d Three pairs of genes (at three
loci on this pair of homologous
chromosomes); same thing as
three pairs of alleles.
Fig. 10.4, p.155
a A pair of homologous chromosomes,
both unduplicated. In most species, one
is inherited from a female parent and its
partner from a male parent.
c A pair of alleles may be identical
or not. Alleles are represented in
the text by letters such as D or d.
12. Modern Genetic Terms
• Homozygous dominant
• Has two dominant alleles for a trait (AA)
• Homozygous recessive
• Has two recessive alleles (aa)
• Heterozygote
• Has two nonidentical alleles (Aa)
13. Modern Genetic Terms
• Dominant allele may mask effect of recessive
allele on the homologous chromosome
• Genotype
• An individual’s alleles at any or all gene loci
• Phenotype
• An individual’s observable traits
15. Key Concepts:
MODERN GENETICS
• Gregor Mendel gathered the first indirect,
experimental evidence of the genetic basis of
inheritance
• His meticulous work tracking traits in many
generations of pea plants gave him clues that
heritable traits are specified in units
• The units, distributed into gametes in predictable
patterns, were later identified as genes
16. 10.2 Mendel’s Theory of
Segregation
• Mendel’s Theory of Segregation:
• Diploid organisms have pairs of genes, on pairs of
homologous chromosomes
• Based on monohybrid experiments
• During meiosis
• Genes of each pair separate
• Each gamete gets one or the other gene
17. Producing Hybrid Offspring
• Crossing two true-breeding parents of
different genotypes yields hybrid offspring
• All F1 offspring are heterozygous for a gene,
and can be used in monohybrid experiments
• All F1 offspring of parental cross AA x aa are Aa
18. A Monohybrid Cross
• Crosses between F1 monohybrids resulted in
these allelic combinations among F2 offspring
• Phenotype ratio 3:1
• Evidence of dominant and recessive traits
22. female gametes
male
gametes
Fig. 10.7a, p.157
a From left to right, step-by-step construction of a Punnett square. Circles
signify gametes. A stands for a dominant allele and a for a recessive allele at
the same gene locus. Offspring genotypes are indicated inside the squares.
A
A A A A
AA
A
A
A
Aa
Aa
Aa
Aa
Aa
aa aa aa aa
a
a
a
a
a
a
a
a
25. Fig. 10.7b, p.157
A
AA
Aa
a Aa
Aa
Aa
A
a
aa
Aa Aa
Aa
Aa
True-breeding homozygous
recessive parent plant
F1 offspring
b Cross between two plants that breed true for different forms of a trait.
True-breeding homozygous
dominant parent plant
27. Fig. 10.7c, p.157
A
Aa
A
Aa
Aa
a
a
Aa
AA Aa
aa
Aa
F2 offspring
Heterozygous
F1 offspring
Heterozygous
F1 offspring
c Cross between heterozygous F1 offspring.
aa
AA
28. Key Concepts:
MONOHYBRID EXPERIMENTS
• Some experiments yielded evidence of gene
segregation
• When one chromosome separates from its
homologous partner during meiosis, the pairs
of alleles on those chromosomes also separate
and end up in different gametes
32. 10.3 Mendel’s Theory of
Independent Assortment
• Mendel’s Theory of Independent Assortment:
• Meiosis assorts gene pairs of homologous
chromosomes independently of gene pairs on all
other chromosomes
• Based on dihybrid experiments
• Pairs of homologous chromosomes align
randomly at metaphase I
34. Fig. 10.8, p.158
One of two possible alignments The only other possible alignment
c Possible
combinations
of alleles in
gametes:
b The resulting
alignments at
metaphase II:
a Chromosome
alignments at
metaphase I:
A
a
AB Ab
ab aB
a
a
a
a a
b
b
b b
b
b
A A
A
A
b b
A A B B
B
B
B B
a
a
a
a
a
a
b
b
b
b
B
B
B
B B
B
A
A
A
A
35. Dihybrid Experiments
• Start with a cross between true-breeding
heterozygous parents that differ for alleles of
two genes (AABB x aabb)
• All F1 offspring are heterozygous for both
genes (AaBb)
36. Mendel’s Dihybrid Experiments
• AaBb x AaBb
• Phenotypes of the F2 offspring of F1 hybrids
were close to a 9:3:3:1 ratio
• 9 dominant for both traits
• 3 dominant for A, recessive for b
• 3 dominant for B, recessive for a
• 1 recessive for both traits
38. Fig. 10.9, p.159
parent homozygous recessive
for white flowers, short stems
Gametes at fertilization
parent homozygous dominant
for purple flowers, tall stems
Meiosis, gamete formation
in true-breeding parent
plants
Possible genotypes resulting from a cross between two F1 plants:
meiosis,
gamete
formation
All F1 plants are AaBb
heterozygotes with purple
flowers and tall stems.
meiosis,
gamete
formation
39. Key Concepts:
DIHYBRID EXPERIMENTS
• Some experiments yielded evidence of
independent assortment
• During meiosis, the members of a pair of
homologous chromosomes are distributed into
gametes independently of all other pairs
45. Incomplete Dominance
• An allele is not fully dominant over its partner
on a homologous chromosome
• Both are expressed
• Produces a phenotype between the two homozygous
conditions
47. Fig. 10.11, p.160
Cross two of the
F1 plants, and
the F2 offspring
will show three
phenotypes in
a 1:2:1 ratio:
homozygous
parent (RR)
homozygous
parent (rr)
heterozygous
F1 offspring (Rr)
x
RR Rr Rr rr
50. Fig. 10.12, p.161
9/16 walnut 3/16 rose 3/16 pea 1/16 single comb
F2 offspring:
RRpp (rose comb) X rrPP (pea comb)
F1 of spring: RrPp (all walnut comb)
RrPp RrPp
RRPP, RRPp,
RrPP, or RrPp
RRpp or Rrpp rrPP or rrPp rrpp
X
53. Fig. 10.13, p.161
EB Eb eB eb
EB
Eb
eB
eb
EeBb
black
EeBB
black
EEBb
black
EEBB
black
EEBb
black
EeBB
black
EeBb
black
Eebb
chocolate
EeBb
black
EEbb
chocolate
EeBb
black
Eebb
chocolate
eeBB
yellow
eeBb
yellow
eebb
yellow
eeBb
yellow
57. 10.5 Linkage Groups
• All genes on the same chromosome are part of
one linkage group
• Crossing over between homologous
chromosomes disrupts gene linkages
58. Linkage Groups and Meiosis
• During meiosis, genes relatively close together
on a chromosome tend to stay together
• Few crossover events occur between them
• Genes that are relatively far apart tend to
assort independently into gametes
• Greater frequency of crossing over between them
60. Fig. 10.15, p.162
Parental
generation
F1 offspring
Gametes
Most gametes have
parental genotypes
A smaller number have
recombinant genotypes
meiosis, gamete formation
All AaCc
ac
AC
×
A
A
A A a
a
a
a
c
c
c c C
C
C
C
67. 10.7 Complex Variations in
Traits
• Polygenic Inheritance
• When products of many
genes influence a trait,
individuals of a population
show a range of continuous
variation for the trait
69. Fig. 10.19a, p.164
Range of values for the trait
This red graph line of the
range of variation for a trait
in a population plots out as
a bell-shaped curve. Such
curves indicate continuous
variation in a population.
Number
of
individuals
with
a
measurable
value
for
the
trait
71. Variations in Gene Expression
• Gene interactions and environmental factors
affect most phenotypes
• Gene products control metabolic pathways
• Mutations may alter or block pathways
72. Key Concepts:
VARIATIONS ON MENDEL’S THEME
• Not all traits have clearly dominant or
recessive forms
• One allele of a pair may be fully or partially
dominant over its nonidentical partner, or
codominant with it
73. VARIATIONS ON MENDEL’S THEME
(cont.)
• Two or more gene pairs often influence the
same trait, and some single genes influence
many traits
• The environment also influences variation in
gene expression