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Presented by
Dr. Ujwalkumar Trivedi
Head
Department of Biotechnology
Marwadi University
Rajkot (Gujarat)
1. Mutagenesis
• Mutation
• Replication Fidelity
• Mutagens
2. DNA Damage
• DNA lesions
• Oxidative Damage
• Alkylation
• Bulky Adducts
3. DNA Repair
• Photoreactivation
• Alkyltransferase
• Excision Repair
• Mismatch Repair
• SOS Repair
• Recombination Repair
Mutation
Replication
Fidelity
Mutagens
Mutagenesis
Mutation refers to a permanent, heritable
alterations in the base sequence of DNA
Reasons:
1. Spontaneous errors in DNA replication or meiotic
recombination.
2. A consequence of the damaging effects of physical
or chemical mutagens on DNA .
Transition : Purine or pyrimidine is replaced
by the other AG T C
Transversion: a purine is replaced by a
pyrimidine or vice verse
A T or C T  A or G
G T or C C  A or G
(A single base change)
•Noncoding DNA
•Nonregulatory DNA
•3rd position of a codon
Silent mutation
Coding DNA  altered Missense mutation
Phenotypic
effects
No
Coding DNA  stop codon
 truncated protein Nonsense mutation
Yes or No
Yes
Frameshift mutations
The translation of a protein encoded gene is
frameshifted , then changed the C-terminal side of the
mutation is completely changed.
The addition or loss of one or more bases in a DNA region
Example of Deletion Mutation and alteration
in coding frame
Rate of Mutation in Genomes
Bacteria: 3bp/1010bp
Humans: 1bp/1010bp
Rate of DNA replication
Prokaryotes: 1000bp/sec
Eukaryotes: 50bp/secs
Replication fidelity is Important to preserve the genetic information from
one generation to the next.
Mutation relevant
Spontaneous errors in DNA replication is very rare, one error per 1010 base
in E. coli.
Replication principle based on the base pairing is crucial to the high
accuracy of genetic information transfer
Protein (DNA Polymerase) involved in replication ensures high fidelity via
two mechanisms
1. Base Selection
2. Proofreading and real-time corrections.
1. DNA polymerase: Watson-Crick base pairing
2. 3’ 5’ proofreading exonuclease.
3. RNA priming: proofreading the 5’ end of the lagging strand
4. Mismatch repair
Proof reading is mediated by
3’to 5’ exonuclease activity of
DNA polymerase
Mutation relevant
Cause DNA damage that can be converted to mutations.
Physical mutagens
High-energy ionizing radiation: X-rays and g-rays 
strand breaks and base/sugar destruction
Nonionizing radiation : UV light pyrimidine dimers
Chemical mutagens
Base analogs: direct mutagenesis
Nitrous acid: deaminates C to produce U
Alkylating agents
Intercalating agents
Lesions-indirect mutagenesis
1.Base Analogues
2.Deamination Chemicals (Nitrous Acid)
3.Alkylating Agent
4.DNA Intercalating Agents
Nitrous acid: deaminates C to produce U, resulting in
G·C A·U
The great majority
of lesions
introduced by
chemical and
physical mutagens
are repaired by
one or more of
the error-free
DNA repair
mechanisms
before the lesions
is encounter by a
replication fork
The 360°
Education
Nurturing students for global care
Base Excision Repair
The 360°
Education
Nurturing students for global care
Nucleotide Excision Repair
The 360°
Education
Nurturing students for global care
Translesion Synthesis
Thank You
Kindly Reach us at:
Marwadi University
Rajkot-Morbi Highway Road, Gauridad, Rajkot, Gujarat 360003
Website: https://www.marwadieducation.edu.in/

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Mutation and DNA repair

  • 1. Presented by Dr. Ujwalkumar Trivedi Head Department of Biotechnology Marwadi University Rajkot (Gujarat)
  • 2. 1. Mutagenesis • Mutation • Replication Fidelity • Mutagens 2. DNA Damage • DNA lesions • Oxidative Damage • Alkylation • Bulky Adducts 3. DNA Repair • Photoreactivation • Alkyltransferase • Excision Repair • Mismatch Repair • SOS Repair • Recombination Repair
  • 4. Mutation refers to a permanent, heritable alterations in the base sequence of DNA Reasons: 1. Spontaneous errors in DNA replication or meiotic recombination. 2. A consequence of the damaging effects of physical or chemical mutagens on DNA .
  • 5. Transition : Purine or pyrimidine is replaced by the other AG T C Transversion: a purine is replaced by a pyrimidine or vice verse A T or C T  A or G G T or C C  A or G (A single base change)
  • 6. •Noncoding DNA •Nonregulatory DNA •3rd position of a codon Silent mutation Coding DNA  altered Missense mutation Phenotypic effects No Coding DNA  stop codon  truncated protein Nonsense mutation Yes or No Yes
  • 7. Frameshift mutations The translation of a protein encoded gene is frameshifted , then changed the C-terminal side of the mutation is completely changed. The addition or loss of one or more bases in a DNA region
  • 8. Example of Deletion Mutation and alteration in coding frame
  • 9. Rate of Mutation in Genomes Bacteria: 3bp/1010bp Humans: 1bp/1010bp Rate of DNA replication Prokaryotes: 1000bp/sec Eukaryotes: 50bp/secs
  • 10. Replication fidelity is Important to preserve the genetic information from one generation to the next. Mutation relevant Spontaneous errors in DNA replication is very rare, one error per 1010 base in E. coli. Replication principle based on the base pairing is crucial to the high accuracy of genetic information transfer Protein (DNA Polymerase) involved in replication ensures high fidelity via two mechanisms 1. Base Selection 2. Proofreading and real-time corrections.
  • 11. 1. DNA polymerase: Watson-Crick base pairing 2. 3’ 5’ proofreading exonuclease. 3. RNA priming: proofreading the 5’ end of the lagging strand 4. Mismatch repair
  • 12. Proof reading is mediated by 3’to 5’ exonuclease activity of DNA polymerase
  • 13. Mutation relevant Cause DNA damage that can be converted to mutations.
  • 14. Physical mutagens High-energy ionizing radiation: X-rays and g-rays  strand breaks and base/sugar destruction Nonionizing radiation : UV light pyrimidine dimers Chemical mutagens Base analogs: direct mutagenesis Nitrous acid: deaminates C to produce U Alkylating agents Intercalating agents Lesions-indirect mutagenesis
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  • 16. 1.Base Analogues 2.Deamination Chemicals (Nitrous Acid) 3.Alkylating Agent 4.DNA Intercalating Agents
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  • 18. Nitrous acid: deaminates C to produce U, resulting in G·C A·U
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  • 21. The great majority of lesions introduced by chemical and physical mutagens are repaired by one or more of the error-free DNA repair mechanisms before the lesions is encounter by a replication fork
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  • 32. The 360° Education Nurturing students for global care Base Excision Repair
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  • 34. The 360° Education Nurturing students for global care Nucleotide Excision Repair
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  • 37. The 360° Education Nurturing students for global care Translesion Synthesis
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  • 42. Thank You Kindly Reach us at: Marwadi University Rajkot-Morbi Highway Road, Gauridad, Rajkot, Gujarat 360003 Website: https://www.marwadieducation.edu.in/