Fluorescence-activated cell sorting (FACS) is a specialized type of flow cytometry that allows for the sorting of cells into containers one by one based on their light scattering and fluorescent characteristics. FACS works by labeling cells with fluorescent markers and passing them through a laser beam, where detectors measure the light scattering and fluorescence to identify cell properties. This technique allows researchers to isolate targeted cell groups for further analysis and is commonly used in medical research areas like hematology and oncology.

1. Fluorescence-activated Cell
Sorting (FACS)
Submitted to,
Dr. Nevin K G
HoD
Dept. of Marine Biosciences
KUFOS
Submitted by,
Alok K
2nd Marine Biology
KUFOS

2. What is FACS?
 Fluorescence-activated cell sorting (FACS) is a
specialized type of flow cytometry.
 It provides a method for sorting a heterogeneous
mixture of biological cells into two or more
containers, one cell at a time, based upon the
specific light scattering and fluorescent
characteristics of each cell.
 It is a useful scientific instrument, as it provides fast,
objective and quantitative recording of
fluorescent signals from individual cells as well as
physical separation of cells of particular interest.

3. What is Flow Cytometry?
 Flow cytometry (FC) is a technique used to detect and
measure physical and chemical characteristics of a
population of cells or particles.
 In this process, a sample containing cells or particles is
suspended in a fluid and injected into the flow cytometer
instrument.
 The sample is focused to ideally flow one cell at a time
through a laser beam, where the light scattered is
characteristic to the cells and their components.
 Cells are often labeled with fluorescent markers so light
is absorbed and then emitted in a band of wavelengths.
 Tens of thousands of cells can be quickly examined and
the data gathered are processed by a computer

5. FLOW CYTOMETER

6. How a flow cytometer works
 The three main components of a flow cytometer are the fluidics,
optics, and electronics .
 The fluidics system of a flow cytometer is responsible for
transporting sample from the sample tube to the flow cell. Once
through the flow cell (and past the laser), the sample is either sorted
(in the case of cell sorters) or transported to waste.
 The components of the optical system include excitation light
sources, lenses, and filters used to collect and move light around the
instrument and the detection system that generates the
photocurrent.
 The electronics are the brains of the flow cytometer. Here, the
photocurrent from the detector is digitized and processed to be
saved for subsequent analysis.

8. Sample uptake into the instrument
 Once the sample is placed on the
flow cytometer, the sample is
taken up into the instrument,
and the cells are surrounded by a
physiological buffer called
sheath fluid.
 The fluidics system—the tubing,
pumps, and valves—organizes
the initial sample suspension
into a single-file stream of
cells as they make their journey
through the flow cytometer for
analysis.

9. Interrogation point
 The place where the cells interact with laser light is called
the interrogation point.
 When the laser light beam illuminates a single cell, some of the light
will strike physical structures within the cell, causing the light to
scatter.
 This light scatter can be measured and correlated with relative cell
size and structures inside the cell.
 These measurements are termed forward angle
scatter(FSC) and side angle scatter (SSC), depending on where
the light is collected with respect to the path of the laser.
 Nearly simultaneously, light from the laser will excite all
fluorophores associated with the cell, which produces a fluorescence
emission.
 All of this light is collected by the detector and processed through
the electronics component of the flow cytometer.
 After passing through the interrogation point, the cell is no longer
needed and is carried by the fluidics system to the waste container.

11. FACS

12. 1. Cell mixture containing fluorescently labelled cells exits via nozzle
2. Laser beam strikes droplets
3. FSC detector identifies the size of the cell
4. SCC detector identifies the granularity or fluorescence of the cell
5. Electrode assign positive or negative charge
6. Positive charged cells are drawn to the negative plate while the
negative cells are drawn to the positive plate
7. The separated cells are collected in different collection tubes

13. Applications
 The first comes to be cell structure, which includes
Cell Size
Particle Size
Surface Area
Karyoplasmic Ratio
Content of DNA, RNA and proteins
Cell Cycle
 The second comes to be cell function, which includes
Specific Antigen
Cytokines
Cell Activity
Enzyme Activity
Hormone Binding Sites
Receptor

14. Applications
 Immunophenotyping: This is a methodology that identifies and quantifies multiple
populations of cells in one heterogeneous sample. This includes peripheral blood, bone marrow,
and lymph material
 Cell Sorting: Advancements in cell sorters are geared towards the gentle isolation of cells into
separate tubes.
 Cell Cycle Analysis: With flow cytometry and FACS, the cell can be analyzed and measured in
all four distinct phases of the entire cell cycle.
 Apoptosis: These two distinct types of cell death, apoptosis and necrosis, can be identified via
flow cytometric methodology and used to determine morphological, biochemical and molecular
changes occurring in dying cells.
 Cell Proliferation Assays: As the cells divide, half of the original dye is passed on to each
daughter cell. By measuring the reduction of the fluorescence signal, researchers can calculate
cellular activation and proliferation.
 Intracellular Calcium Flux: The flow cytometer is able to detect the flux of calcium into the
cell and provide detailed measurement data.

15. Conclusion
 Fluorescence-activated cell sorting (FACS),
sometimes called fluorescence-assisted cell sorting,
is a specialized type of flow cytometry that uses
fluorescent markers to target and isolate cell groups.
 This cell sorting technique is commonly used in
hematopoiesis, oncology, and stem cell biology
research.

16. Reference
 https://www.sinobiological.com/category/fcm-facs-
facs
 https://nanocellect.com/blog/flow-cytometry-vs-
facs/