Cilia and flagella are similar organelles that protrude from cells and aid in motility. They differ in length, with cilia typically being shorter (5-20 micrometers) and flagella being longer (100-200 micrometers). They also differ in beating patterns, with cilia having a two-phase oar-like stroke and flagella having undulating waves. Both contain a core axoneme structure of microtubule doublets that slide against each other to facilitate bending and movement via dynein motor proteins.