The document provides information about various bioinformatics lessons that will take place on Thursdays, including topics like biological databases, sequence alignments, database searching using FASTA and BLAST, phylogenetics, and protein structure. It also includes details about database searching methods like dynamic programming, FASTA, BLAST, and parameters that can be adjusted for BLAST searches.
/Regex makes me want to (weep|give up|(╯°□°)╯︵ ┻━┻)\.?/ibrettflorio
REGEX! Love it or hate it, sometimes you actually need it. And when that time comes, there's no reason to be afraid or to ask help from that one weirdo on your team who actually loves regular expressions. (I'm that weirdo, fwiw.)
This session is geared towards beginning and intermediate regex users, as well as experienced programmers and developers who just don't really grok regex. We'll cover the following topics using practical examples that you might encounter in your own projects. (ie. No matching against "dog" and "cat".)
* What is regex? How's it work? A brief history.
* Syntax, special characters, character classes
* Grouping, capturing, and common gotchas
* Use cases for matching, validating, and replacing
* More advanced topics like backreferences and lookarounds
/Regex makes me want to (weep|give up|(╯°□°)╯︵ ┻━┻)\.?/ibrettflorio
REGEX! Love it or hate it, sometimes you actually need it. And when that time comes, there's no reason to be afraid or to ask help from that one weirdo on your team who actually loves regular expressions. (I'm that weirdo, fwiw.)
This session is geared towards beginning and intermediate regex users, as well as experienced programmers and developers who just don't really grok regex. We'll cover the following topics using practical examples that you might encounter in your own projects. (ie. No matching against "dog" and "cat".)
* What is regex? How's it work? A brief history.
* Syntax, special characters, character classes
* Grouping, capturing, and common gotchas
* Use cases for matching, validating, and replacing
* More advanced topics like backreferences and lookarounds
Post-editese: an Exacerbated Translationese (presentation at MT Summit 2019)Antonio Toral
Post-editing (PE) machine translation (MT) is widely used for dissemination because it leads to higher productivity than human translation from scratch (HT). In addition, PE translations are found to be of equal or better quality than HTs. However, most such studies measure quality solely as the number of errors.
We conduct a set of computational analyses in which we compare PE against HT on three different datasets that cover five translation directions with measures that address different translation universals and laws of translation: simplification, normalisation and interference. We find out that PEs are simpler and more normalised and have a higher degree of interference from the source language than HTs.
Post-editese: an Exacerbated Translationese (presentation at MT Summit 2019)Antonio Toral
Post-editing (PE) machine translation (MT) is widely used for dissemination because it leads to higher productivity than human translation from scratch (HT). In addition, PE translations are found to be of equal or better quality than HTs. However, most such studies measure quality solely as the number of errors.
We conduct a set of computational analyses in which we compare PE against HT on three different datasets that cover five translation directions with measures that address different translation universals and laws of translation: simplification, normalisation and interference. We find out that PEs are simpler and more normalised and have a higher degree of interference from the source language than HTs.
Presentation for blast algorithm bio-informaticezahid6
Presentation for BLAST algorithm
Publisher Md.Zahid Hasan
Bio-informatics blast is the use of computational tools for the process of acquisition, visualization, analysis and distribution of these datasets obtained by imaging modalities.
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdfTechSoup
In this webinar you will learn how your organization can access TechSoup's wide variety of product discount and donation programs. From hardware to software, we'll give you a tour of the tools available to help your nonprofit with productivity, collaboration, financial management, donor tracking, security, and more.
Model Attribute Check Company Auto PropertyCeline George
In Odoo, the multi-company feature allows you to manage multiple companies within a single Odoo database instance. Each company can have its own configurations while still sharing common resources such as products, customers, and suppliers.
Synthetic Fiber Construction in lab .pptxPavel ( NSTU)
Synthetic fiber production is a fascinating and complex field that blends chemistry, engineering, and environmental science. By understanding these aspects, students can gain a comprehensive view of synthetic fiber production, its impact on society and the environment, and the potential for future innovations. Synthetic fibers play a crucial role in modern society, impacting various aspects of daily life, industry, and the environment. ynthetic fibers are integral to modern life, offering a range of benefits from cost-effectiveness and versatility to innovative applications and performance characteristics. While they pose environmental challenges, ongoing research and development aim to create more sustainable and eco-friendly alternatives. Understanding the importance of synthetic fibers helps in appreciating their role in the economy, industry, and daily life, while also emphasizing the need for sustainable practices and innovation.
Operation “Blue Star” is the only event in the history of Independent India where the state went into war with its own people. Even after about 40 years it is not clear if it was culmination of states anger over people of the region, a political game of power or start of dictatorial chapter in the democratic setup.
The people of Punjab felt alienated from main stream due to denial of their just demands during a long democratic struggle since independence. As it happen all over the word, it led to militant struggle with great loss of lives of military, police and civilian personnel. Killing of Indira Gandhi and massacre of innocent Sikhs in Delhi and other India cities was also associated with this movement.
The Roman Empire A Historical Colossus.pdfkaushalkr1407
The Roman Empire, a vast and enduring power, stands as one of history's most remarkable civilizations, leaving an indelible imprint on the world. It emerged from the Roman Republic, transitioning into an imperial powerhouse under the leadership of Augustus Caesar in 27 BCE. This transformation marked the beginning of an era defined by unprecedented territorial expansion, architectural marvels, and profound cultural influence.
The empire's roots lie in the city of Rome, founded, according to legend, by Romulus in 753 BCE. Over centuries, Rome evolved from a small settlement to a formidable republic, characterized by a complex political system with elected officials and checks on power. However, internal strife, class conflicts, and military ambitions paved the way for the end of the Republic. Julius Caesar’s dictatorship and subsequent assassination in 44 BCE created a power vacuum, leading to a civil war. Octavian, later Augustus, emerged victorious, heralding the Roman Empire’s birth.
Under Augustus, the empire experienced the Pax Romana, a 200-year period of relative peace and stability. Augustus reformed the military, established efficient administrative systems, and initiated grand construction projects. The empire's borders expanded, encompassing territories from Britain to Egypt and from Spain to the Euphrates. Roman legions, renowned for their discipline and engineering prowess, secured and maintained these vast territories, building roads, fortifications, and cities that facilitated control and integration.
The Roman Empire’s society was hierarchical, with a rigid class system. At the top were the patricians, wealthy elites who held significant political power. Below them were the plebeians, free citizens with limited political influence, and the vast numbers of slaves who formed the backbone of the economy. The family unit was central, governed by the paterfamilias, the male head who held absolute authority.
Culturally, the Romans were eclectic, absorbing and adapting elements from the civilizations they encountered, particularly the Greeks. Roman art, literature, and philosophy reflected this synthesis, creating a rich cultural tapestry. Latin, the Roman language, became the lingua franca of the Western world, influencing numerous modern languages.
Roman architecture and engineering achievements were monumental. They perfected the arch, vault, and dome, constructing enduring structures like the Colosseum, Pantheon, and aqueducts. These engineering marvels not only showcased Roman ingenuity but also served practical purposes, from public entertainment to water supply.
Instructions for Submissions thorugh G- Classroom.pptxJheel Barad
This presentation provides a briefing on how to upload submissions and documents in Google Classroom. It was prepared as part of an orientation for new Sainik School in-service teacher trainees. As a training officer, my goal is to ensure that you are comfortable and proficient with this essential tool for managing assignments and fostering student engagement.
Unit 8 - Information and Communication Technology (Paper I).pdfThiyagu K
This slides describes the basic concepts of ICT, basics of Email, Emerging Technology and Digital Initiatives in Education. This presentations aligns with the UGC Paper I syllabus.
Acetabularia Information For Class 9 .docxvaibhavrinwa19
Acetabularia acetabulum is a single-celled green alga that in its vegetative state is morphologically differentiated into a basal rhizoid and an axially elongated stalk, which bears whorls of branching hairs. The single diploid nucleus resides in the rhizoid.
June 3, 2024 Anti-Semitism Letter Sent to MIT President Kornbluth and MIT Cor...Levi Shapiro
Letter from the Congress of the United States regarding Anti-Semitism sent June 3rd to MIT President Sally Kornbluth, MIT Corp Chair, Mark Gorenberg
Dear Dr. Kornbluth and Mr. Gorenberg,
The US House of Representatives is deeply concerned by ongoing and pervasive acts of antisemitic
harassment and intimidation at the Massachusetts Institute of Technology (MIT). Failing to act decisively to ensure a safe learning environment for all students would be a grave dereliction of your responsibilities as President of MIT and Chair of the MIT Corporation.
This Congress will not stand idly by and allow an environment hostile to Jewish students to persist. The House believes that your institution is in violation of Title VI of the Civil Rights Act, and the inability or
unwillingness to rectify this violation through action requires accountability.
Postsecondary education is a unique opportunity for students to learn and have their ideas and beliefs challenged. However, universities receiving hundreds of millions of federal funds annually have denied
students that opportunity and have been hijacked to become venues for the promotion of terrorism, antisemitic harassment and intimidation, unlawful encampments, and in some cases, assaults and riots.
The House of Representatives will not countenance the use of federal funds to indoctrinate students into hateful, antisemitic, anti-American supporters of terrorism. Investigations into campus antisemitism by the Committee on Education and the Workforce and the Committee on Ways and Means have been expanded into a Congress-wide probe across all relevant jurisdictions to address this national crisis. The undersigned Committees will conduct oversight into the use of federal funds at MIT and its learning environment under authorities granted to each Committee.
• The Committee on Education and the Workforce has been investigating your institution since December 7, 2023. The Committee has broad jurisdiction over postsecondary education, including its compliance with Title VI of the Civil Rights Act, campus safety concerns over disruptions to the learning environment, and the awarding of federal student aid under the Higher Education Act.
• The Committee on Oversight and Accountability is investigating the sources of funding and other support flowing to groups espousing pro-Hamas propaganda and engaged in antisemitic harassment and intimidation of students. The Committee on Oversight and Accountability is the principal oversight committee of the US House of Representatives and has broad authority to investigate “any matter” at “any time” under House Rule X.
• The Committee on Ways and Means has been investigating several universities since November 15, 2023, when the Committee held a hearing entitled From Ivory Towers to Dark Corners: Investigating the Nexus Between Antisemitism, Tax-Exempt Universities, and Terror Financing. The Committee followed the hearing with letters to those institutions on January 10, 202
5. Needleman-Wunsch-edu.pl The Score Matrix ---------------- Seq1(j) 1 2 3 4 5 6 7 8 9 10 Seq2 * C K H V F C R V C I (i) * 0 -1 -2 -3 -4 -5 -6 -7 -8 -9 -10 1 C -1 1 0 -1 -2 -3 -4 -5 -6 -7 -8 2 K -2 0 2 1 0 -1 -2 -3 -4 -5 -6 3 K -3 -1 1 1 0 -1 -2 -3 -4 -5 -6 4 C -4 -2 0 0 0 -1 0 -1 -2 -3 -4 5 F -5 -3 -1 -1 -1 1 0 -1 -2 -3 -4 6 C -6 -4 -2 -2 -2 0 2 1 0 -1 -2 7 K -7 -5 -3 -3 -3 -1 1 1 0 -1 -2 8 C -8 -6 -4 -4 -4 -2 0 0 0 1 0 9 V -9 -7 -5 -5 -3 -3 -1 -1 1 0 0 A: matrix(i,j) = matrix(i-1,j-1) + (MIS)MATCH if (substr(seq1, j-1 ,1) eq substr(seq2, i-1 ,1) B: up_score = matrix(i-1,j) + GAP C: left_score = matrix(i,j-1) + GAP a b c
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14. FastA (http://www.ebi.ac.uk/fasta33/) Blosum50 default. Lower PAM higher blosum to detect close sequences Higher PAM and lower blosum to detect distant sequences Gap opening penalty -12, -16 by default for fasta with proteins and DNA, respectively Gap extension penalty -2, -4 by default for fasta with proteins and DNA, respectively The larger the word-length the less sensitive, but faster the search will be Max number of scores and alignments is 100
15. FastA Output Database code hyperlinked to the SRS database at EBI Accession number Description Length Initn, init1, opt, z-score calculated during run E score - expectation value, how many hits are expected to be found by chance with such a score while comparing this query to this database. E() does not represent the % similarity
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22. The big red button Do My Job It is dangerous to hide too much of the underlying complexity from the scientists.
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29. S Length of extension Score Trim to max indexed * *Two non-overlapping HSP’s on a diagonal within distance A
30. S Length of extension Score Trim to max indexed * *Two non-overlapping HSP’s on a diagonal within distance A