This document provides information on correlation analysis and path analysis techniques used in plant breeding. It defines correlation as a statistic that measures the degree and direction of association between two or more variables. There are three types of correlation - simple, partial and multiple. Path analysis measures the direct and indirect effects of variables on a dependent variable like yield by splitting the correlation coefficient. It allows determination of important yield contributing traits for use in indirect selection. The document outlines the properties, computation and applications of correlation analysis and path analysis in genetic improvement of crops.
It comprises on mating designs used in plant breeding programs. 6 basic mating designs are briefly explained in it with their requirements as well limiting factors...
Power Point is deals with the different aspects of Quantitative genetics in plant breeding it converse Basic Principles of Biometrical Genetics, estimation of Variability, Correlation, Principal Component Analysis, Path analysis, Different Matting design and Stability so on
This document discusses the Wr-Vr graph, a graphical approach developed by Hayman for diallel cross analysis. The Wr-Vr graph plots the covariance between parents (Wr) against the variance of arrays (Vr). A regression line is fitted and its intercept with the Wr axis indicates the average degree of dominance. The position of parent points relative to the regression line and parabola limits provides information about gene effects and interactions among the parents.
The presentation was done as part of the course STAT 504 titled Quantitative Genetics in Second Semester of MSc. Agricultural Statistics at Agricultural College, Bapatla under ANGRAU, Andhra Pradesh
This document provides information on correlation analysis and path analysis techniques used in plant breeding. It defines correlation as a statistic that measures the degree and direction of association between two or more variables. There are three types of correlation - simple, partial and multiple. Path analysis measures the direct and indirect effects of variables on a dependent variable like yield by splitting the correlation coefficient. It allows determination of important yield contributing traits for use in indirect selection. The document outlines the properties, computation and applications of correlation analysis and path analysis in genetic improvement of crops.
It comprises on mating designs used in plant breeding programs. 6 basic mating designs are briefly explained in it with their requirements as well limiting factors...
Power Point is deals with the different aspects of Quantitative genetics in plant breeding it converse Basic Principles of Biometrical Genetics, estimation of Variability, Correlation, Principal Component Analysis, Path analysis, Different Matting design and Stability so on
This document discusses the Wr-Vr graph, a graphical approach developed by Hayman for diallel cross analysis. The Wr-Vr graph plots the covariance between parents (Wr) against the variance of arrays (Vr). A regression line is fitted and its intercept with the Wr axis indicates the average degree of dominance. The position of parent points relative to the regression line and parabola limits provides information about gene effects and interactions among the parents.
The presentation was done as part of the course STAT 504 titled Quantitative Genetics in Second Semester of MSc. Agricultural Statistics at Agricultural College, Bapatla under ANGRAU, Andhra Pradesh
Heterotic group “is a group of related or unrelated genotypes from the same or different populations, which display similar combining ability and heterotic response when crossed with genotypes from other genetically distinct germplasm groups.”
- The document discusses D2 analysis, a technique used to assess genetic diversity among plant genotypes.
- D2 analysis involves calculating distances between genotypes based on multiple quantitative traits and clustering genotypes based on these distances.
- The document provides details on the steps involved in D2 analysis, including data collection, calculation of variances/covariances, computation of D2 values, clustering genotypes, and interpretation.
- An example application of D2 analysis to assess genetic diversity among litchi hybrids is described. Five clusters were identified among 18 hybrids based on quantitative traits.
This document discusses marker-assisted backcrossing (MAB) for introgressing traits from a donor parent into a recipient line. MAB uses DNA markers linked to target genes/QTLs to aid in selection. Markers can be used for foreground selection of target genes, background selection to recover the recipient genome, and recombinant selection to minimize linkage drag. A case study is described where MAB was used over multiple generations to introgress 5 drought resistance QTLs from a donor rice variety into a recipient variety. Through foreground, background, and recombinant selection using DNA markers, lines were developed with the target QTLs and most of the recipient genetic background.
Stability analysis and G*E interactions in plantsRachana Bagudam
Gene–environment interaction is when two different genotypes respond to environmental variation in different ways. Stability refers to the performance with respective to environmental factors overtime within given location. Selection for stability is not possible until a biometrical model with suitable parameters is available to provide criteria necessary to rank varieties / breeds for stability. Different models of stability are discussed.
A measure of group distance based on multiple charaters.
It introduce by P.C.Mahalanobis in 1928.
Rao 1952 use this technique for assessment of genetic diversity in plant breeding.The genotypes for study of genetic diversity includes germplasm lines, and varieties.
3.Grouping of genotypes into clusters
4.Average Intra and Inter-cluster Distance
5.Cluster Diagram
6.Contributation of individual characters towards total divergence
The document discusses the AMMI model for analyzing genotype by environment interactions in plant breeding experiments. It begins by introducing the concept of genotype by environment interaction and different models used for stability analysis. It then describes the AMMI model in detail, including that it combines ANOVA and PCA to analyze main and interaction effects. Key features of AMMI mentioned are that it identifies patterns of interaction, provides reliable genotype performance estimates, and enables visualization of relationships through biplots. Examples are given of crops AMMI has been applied to successfully.
This document discusses components of genetic variation, including heritability and genetic advance. It explains that quantitative traits are influenced by multiple genes and are continuously variable, in contrast to qualitative traits which have discrete classes determined by one or few genes. There are different components of genetic variation, including additive, dominance and epistatic variance. Heritability estimates the proportion of phenotypic variation attributable to genetic factors, and is calculated as the ratio of genetic to phenotypic variance. Broad-sense heritability includes all genetic effects while narrow-sense considers only additive effects. Genetic advance measures the improvement from selection and depends on genetic variation, heritability and selection intensity. The environment also influences quantitative trait expression.
This document discusses combining ability analysis in plant breeding. It defines combining ability as the ability of a genotype to transmit superior performance in crosses. There are two types of combining ability: general combining ability (GCA), which is the average performance of a genotype in crosses, and specific combining ability (SCA), which is the performance in a specific cross. The document outlines methods to estimate GCA and SCA, including diallel crosses, and how this analysis can be used to select parents for hybridization and identify superior cross combinations.
Selection system: Biplots and Mapping genotyoeAlex Harley
The document discusses using biplots and genotype mapping to analyze multi-environment trials. It describes biplots, how they are constructed using methods like AMMI analysis of variance and principal component analysis. Biplots can show the relationship between genotypes and environments, and identify stable genotypes. The document also discusses genotype by genotype environment (GGE) biplots and their use in identifying mega-environments and ranking genotypes. It provides an example study using these methods to analyze rice hybrids in different locations and identify high yielding stable varieties.
Quantitative trait loci (QTL) analysis and its applications in plant breedingPGS
Abstract
Many agriculturally important traits such as grain yield, protein content and relative disease resistance are controlled by many genes and are known as quantitative traits (also polygenic or complex traits). A quantitative trait depends on the cumulative actions of many genes and the environment. The genomic regions that contain genes associated with a quantitative trait are known as quantitative trait loci (QTLs). Thus, a QTL could be defined as a genomic region responsible for a part of the observed phenotypic variation for a quantitative trait. A QTL can be a single gene or a cluster of linked genes that affect the trait. The effects of individual QTLs may differ from each other and change from environment to environment. The genetics of a quantitative trait can often be deduced from the statistical analysis of several segregating populations. Recently, by using molecular markers, it is feasible to analyze quantitative traits and identify individual QTLs or genes controlling the traits of interest in breeding programs.
Charles Darwin observed that crossed plants of Linaria vulgaris were taller and more vigorous than self-fertilized plants of the same species. Heterosis, coined by Shull in 1952, refers to the increased performance of F1 hybrid plants compared to the average of their inbred parental lines, in traits like biomass, size, yield and resistance. There are several hypotheses for heterosis, including dominance, overdominance and epistasis models. The dominance model proposes that superior performance is due to dominant alleles masking recessive alleles, while the overdominance model suggests heterozygosity itself provides benefits over either homozygote.
This document outlines the principles and methods of plant breeding. It discusses the impact of parents, quality of parents, objectives of breeding, breeding methods, and pedigree. The main methods covered are for cross-pollinated crops, including mass selection, progeny selection, and recurrent selection, and for self-pollinated crops, like mass selection, pure line selection, bulk method, and back-cross method. It also defines a pure line as the progeny of a single homozygous plant of a self-pollinated species.
1. Association analysis includes correlation coefficient analysis and path coefficient analysis to study the relationship between two or more variables.
2. Correlation coefficient analysis measures the degree and direction of association between variables on a scale of -1 to 1, where 1 is total positive correlation and -1 is total negative correlation.
3. Path coefficient analysis splits the correlation coefficients into measures of direct and indirect effects to determine the direct and indirect contribution of independent variables to a dependent variable like yield.
This document summarizes three case studies on using marker-assisted breeding techniques:
1) Introgressing rice QTLs controlling root traits from donor Azucena into recipient Kalinga III. Five target QTLs were introgressed over three backcrosses using foreground, background, and recombinant selection with RFLPs and SSRs.
2) Introgressing the submergence tolerance Sub1 QTL from donor IR49830 into popular rice variety Swarna. The QTL was introgressed over three backcrosses and a BC3F2 line identified with minimal donor DNA.
3) Introgressing drought tolerance QTLs from donor CML247 into
The document discusses MAGIC (Multi-parent Advanced Generation Inter-Cross) populations, which are created by intercrossing multiple parent lines over several generations. This increases recombination and genetic diversity. Key points:
- MAGIC populations allow more precise mapping of QTLs controlling quantitative traits compared to biparental populations.
- Two case studies describe the development of MAGIC populations in rice with 8 founders each, and tomato with 8 founders. Traits like yield, disease resistance, and abiotic stress tolerance were evaluated.
- Advantages include exploiting more genetic variation, developing varieties with favorable trait combinations, and more accurate gene mapping. Limitations include requiring more time, resources for phenotyping and breeding.
Selection is the process of choosing plants with desirable traits and eliminating those with undesirable traits. This helps breeders identify genetically superior plants for traits like yield, quality, disease resistance, and more. Selection allows crop improvement by increasing the frequency of beneficial alleles in subsequent generations. The response to selection, or genetic gain, depends on factors like heritability, selection intensity, generation interval, and selection differential. Selection has limits as favorable alleles become fixed and genetic variation decreases. Gametic and zygotic selection differ in how dominance affects the selection of genotypes and alleles.
Heterotic group “is a group of related or unrelated genotypes from the same or different populations, which display similar combining ability and heterotic response when crossed with genotypes from other genetically distinct germplasm groups.”
- The document discusses D2 analysis, a technique used to assess genetic diversity among plant genotypes.
- D2 analysis involves calculating distances between genotypes based on multiple quantitative traits and clustering genotypes based on these distances.
- The document provides details on the steps involved in D2 analysis, including data collection, calculation of variances/covariances, computation of D2 values, clustering genotypes, and interpretation.
- An example application of D2 analysis to assess genetic diversity among litchi hybrids is described. Five clusters were identified among 18 hybrids based on quantitative traits.
This document discusses marker-assisted backcrossing (MAB) for introgressing traits from a donor parent into a recipient line. MAB uses DNA markers linked to target genes/QTLs to aid in selection. Markers can be used for foreground selection of target genes, background selection to recover the recipient genome, and recombinant selection to minimize linkage drag. A case study is described where MAB was used over multiple generations to introgress 5 drought resistance QTLs from a donor rice variety into a recipient variety. Through foreground, background, and recombinant selection using DNA markers, lines were developed with the target QTLs and most of the recipient genetic background.
Stability analysis and G*E interactions in plantsRachana Bagudam
Gene–environment interaction is when two different genotypes respond to environmental variation in different ways. Stability refers to the performance with respective to environmental factors overtime within given location. Selection for stability is not possible until a biometrical model with suitable parameters is available to provide criteria necessary to rank varieties / breeds for stability. Different models of stability are discussed.
A measure of group distance based on multiple charaters.
It introduce by P.C.Mahalanobis in 1928.
Rao 1952 use this technique for assessment of genetic diversity in plant breeding.The genotypes for study of genetic diversity includes germplasm lines, and varieties.
3.Grouping of genotypes into clusters
4.Average Intra and Inter-cluster Distance
5.Cluster Diagram
6.Contributation of individual characters towards total divergence
The document discusses the AMMI model for analyzing genotype by environment interactions in plant breeding experiments. It begins by introducing the concept of genotype by environment interaction and different models used for stability analysis. It then describes the AMMI model in detail, including that it combines ANOVA and PCA to analyze main and interaction effects. Key features of AMMI mentioned are that it identifies patterns of interaction, provides reliable genotype performance estimates, and enables visualization of relationships through biplots. Examples are given of crops AMMI has been applied to successfully.
This document discusses components of genetic variation, including heritability and genetic advance. It explains that quantitative traits are influenced by multiple genes and are continuously variable, in contrast to qualitative traits which have discrete classes determined by one or few genes. There are different components of genetic variation, including additive, dominance and epistatic variance. Heritability estimates the proportion of phenotypic variation attributable to genetic factors, and is calculated as the ratio of genetic to phenotypic variance. Broad-sense heritability includes all genetic effects while narrow-sense considers only additive effects. Genetic advance measures the improvement from selection and depends on genetic variation, heritability and selection intensity. The environment also influences quantitative trait expression.
This document discusses combining ability analysis in plant breeding. It defines combining ability as the ability of a genotype to transmit superior performance in crosses. There are two types of combining ability: general combining ability (GCA), which is the average performance of a genotype in crosses, and specific combining ability (SCA), which is the performance in a specific cross. The document outlines methods to estimate GCA and SCA, including diallel crosses, and how this analysis can be used to select parents for hybridization and identify superior cross combinations.
Selection system: Biplots and Mapping genotyoeAlex Harley
The document discusses using biplots and genotype mapping to analyze multi-environment trials. It describes biplots, how they are constructed using methods like AMMI analysis of variance and principal component analysis. Biplots can show the relationship between genotypes and environments, and identify stable genotypes. The document also discusses genotype by genotype environment (GGE) biplots and their use in identifying mega-environments and ranking genotypes. It provides an example study using these methods to analyze rice hybrids in different locations and identify high yielding stable varieties.
Quantitative trait loci (QTL) analysis and its applications in plant breedingPGS
Abstract
Many agriculturally important traits such as grain yield, protein content and relative disease resistance are controlled by many genes and are known as quantitative traits (also polygenic or complex traits). A quantitative trait depends on the cumulative actions of many genes and the environment. The genomic regions that contain genes associated with a quantitative trait are known as quantitative trait loci (QTLs). Thus, a QTL could be defined as a genomic region responsible for a part of the observed phenotypic variation for a quantitative trait. A QTL can be a single gene or a cluster of linked genes that affect the trait. The effects of individual QTLs may differ from each other and change from environment to environment. The genetics of a quantitative trait can often be deduced from the statistical analysis of several segregating populations. Recently, by using molecular markers, it is feasible to analyze quantitative traits and identify individual QTLs or genes controlling the traits of interest in breeding programs.
Charles Darwin observed that crossed plants of Linaria vulgaris were taller and more vigorous than self-fertilized plants of the same species. Heterosis, coined by Shull in 1952, refers to the increased performance of F1 hybrid plants compared to the average of their inbred parental lines, in traits like biomass, size, yield and resistance. There are several hypotheses for heterosis, including dominance, overdominance and epistasis models. The dominance model proposes that superior performance is due to dominant alleles masking recessive alleles, while the overdominance model suggests heterozygosity itself provides benefits over either homozygote.
This document outlines the principles and methods of plant breeding. It discusses the impact of parents, quality of parents, objectives of breeding, breeding methods, and pedigree. The main methods covered are for cross-pollinated crops, including mass selection, progeny selection, and recurrent selection, and for self-pollinated crops, like mass selection, pure line selection, bulk method, and back-cross method. It also defines a pure line as the progeny of a single homozygous plant of a self-pollinated species.
1. Association analysis includes correlation coefficient analysis and path coefficient analysis to study the relationship between two or more variables.
2. Correlation coefficient analysis measures the degree and direction of association between variables on a scale of -1 to 1, where 1 is total positive correlation and -1 is total negative correlation.
3. Path coefficient analysis splits the correlation coefficients into measures of direct and indirect effects to determine the direct and indirect contribution of independent variables to a dependent variable like yield.
This document summarizes three case studies on using marker-assisted breeding techniques:
1) Introgressing rice QTLs controlling root traits from donor Azucena into recipient Kalinga III. Five target QTLs were introgressed over three backcrosses using foreground, background, and recombinant selection with RFLPs and SSRs.
2) Introgressing the submergence tolerance Sub1 QTL from donor IR49830 into popular rice variety Swarna. The QTL was introgressed over three backcrosses and a BC3F2 line identified with minimal donor DNA.
3) Introgressing drought tolerance QTLs from donor CML247 into
The document discusses MAGIC (Multi-parent Advanced Generation Inter-Cross) populations, which are created by intercrossing multiple parent lines over several generations. This increases recombination and genetic diversity. Key points:
- MAGIC populations allow more precise mapping of QTLs controlling quantitative traits compared to biparental populations.
- Two case studies describe the development of MAGIC populations in rice with 8 founders each, and tomato with 8 founders. Traits like yield, disease resistance, and abiotic stress tolerance were evaluated.
- Advantages include exploiting more genetic variation, developing varieties with favorable trait combinations, and more accurate gene mapping. Limitations include requiring more time, resources for phenotyping and breeding.
Selection is the process of choosing plants with desirable traits and eliminating those with undesirable traits. This helps breeders identify genetically superior plants for traits like yield, quality, disease resistance, and more. Selection allows crop improvement by increasing the frequency of beneficial alleles in subsequent generations. The response to selection, or genetic gain, depends on factors like heritability, selection intensity, generation interval, and selection differential. Selection has limits as favorable alleles become fixed and genetic variation decreases. Gametic and zygotic selection differ in how dominance affects the selection of genotypes and alleles.
This document discusses heritability, genetic advance, and genotype by environment (G x E) interaction in plant breeding. It defines heritability as the proportion of phenotypic variance attributable to genetic factors. Broad sense heritability includes all genetic effects, while narrow sense heritability considers only additive genetic effects. High heritability and high genetic advance indicate additive gene control and potential for effective selection. Low heritability and genetic advance suggest non-additive gene effects where heterosis breeding may be better. G x E interaction refers to differences in genotype responses across environments and can change best genotype rankings between locations. Understanding these concepts aids plant breeders in selecting optimal traits, populations, and environments for crop improvement programs.
Heritability is the proportion of phenotypic variation caused by genetic factors rather than environmental factors. It can be estimated as broad sense heritability, using total genetic variance, or narrow sense heritability, using only additive genetic variance. High heritability combined with high genetic advance indicates a character is controlled by additive genes and is best improved through selection. Low heritability with low genetic advance means a character is strongly influenced by the environment. Heritability and genetic advance help plant breeders understand the genetic basis of traits and determine the most effective breeding methods.
1) The document discusses concepts of heritability, genetic advance, and genotype-environment interaction which are important in plant breeding. It defines heritability as the ratio of genetic to phenotypic variance and explains broad and narrow sense heritability.
2) Genetic advance is the improvement in mean genotypic value from selection and depends on genetic variability, heritability, and selection intensity. High genetic advance indicates additive gene control.
3) Genotype-environment interaction refers to differences in genotype performance across environments. Quantitative interaction involves differences in scale while qualitative/crossover interaction involves changes in rank. Low interaction is desirable.
This document discusses genomic selection in plants. It begins with an introduction to genomic selection and its history. Genomic selection uses dense genetic markers and phenotypic data from a reference population to develop prediction equations that can then be applied to other populations to estimate genomic breeding values without additional phenotyping. The document outlines the steps involved, including preparing phenotypic and genotypic data, constructing prediction models, fitting and evaluating models, and applying genomic selection in breeding programs. It provides examples of software used and factors that affect prediction accuracy. The document concludes with two case studies, one on genomic selection for hybrid rice and another on genomic selection to improve wheat grain quality.
Genomic selection (GS) is a method for predicting an individual's genetic merit based on its genome-wide marker data. It allows for selection to take place in the laboratory based on genomic estimated breeding values. Key factors for the success of GS include the size and type of the training population, marker density and type, availability of high-density genome-wide markers, and appropriate statistical prediction models. Ridge regression BLUP and Bayesian regression methods are commonly used prediction models. Future directions for improving GS include determining optimal training population design, modeling non-additive genetic effects, and managing long-term genetic gain.
This document discusses genetic parameters and their estimation in animal breeding. It defines genetic parameters as quantities that characterize a population's statistics, such as variance and mean, which can be estimated from sample data. The key genetic parameters discussed are heritability, repeatability, and genetic correlation. Heritability quantifies the proportion of phenotypic variation attributable to genetics. Repeatability sets an upper limit for heritability and indicates how early performance predicts later performance. Genetic correlation indicates the extent to which traits are influenced by the same genes. The document outlines methods for estimating these parameters using variance components from experimental data.
Variance measures the variability from an average or mean value. Phenotypic variance is partitioned into components attributable to different causes such as genetic variance and environmental variance. Genetic variance has additive and non-additive components. Genotype-environment interactions exist when genotypes perform differently in different environments. Studying genotype-environment interactions helps identify genotypes with general or specific adaptability. The best genotype in one environment may not be the best in another if genotype-environment interactions are present.
Genomic selection is a form of marker-assisted selection that uses genetic markers covering the entire genome to calculate breeding values and predict an individual's performance. It has several potential advantages over traditional phenotypic and marker-assisted selection, including higher selection accuracy, shorter breeding cycles, and the ability to select individuals earlier. While genomic selection has been widely adopted in animal breeding, its application in plant breeding is still developing, with many studies focusing on crops like maize. Further improvements in statistical models, genotyping technologies, and databases will help increase prediction accuracy and support wider use of genomic selection in plant breeding programs.
Heritability, genetic advance, and genotype-environment interaction are important concepts in plant breeding. Heritability refers to the proportion of phenotypic variation attributable to genetic factors and is estimated based on genotypic and phenotypic variances. High heritability traits can be effectively selected for, while low heritability traits are more influenced by the environment. Genetic advance measures genetic improvement from selection and depends on heritability, genetic variability, and selection intensity. Genotype-environment interaction occurs when genotypes respond differently to varying environments and can be quantitative or qualitative. Quantitative interactions affect trait expression uniformly across environments, while qualitative interactions change trait rankings between environments.
This document provides an introduction to genomic selection for crop improvement. It discusses how genomic selection works and the steps involved, including creating a training population, genotyping and phenotyping the training population, model training, genotyping the breeding population, calculating genomic estimated breeding values, and making selection decisions. Some advantages of genomic selection are greater genetic gains per unit of time compared to phenotypic selection and the ability to select for low heritability traits. Factors that can affect the accuracy of genomic predicted breeding values include the prediction model used, population size, marker density and type, trait heritability, and number of causal variants. Genomic selection is being applied to plant breeding programs for traits like disease resistance and yield to help meet future food
This document discusses variance and covariance in genetics. It defines variance as a measure of variation and covariance as a measure of how two variables change together. Genetic variance refers to the heritable portion of total variance and can be divided into additive, dominance, and epistatic components. The document provides formulas to calculate variance in different generations of a controlled cross, such as F2, F3, backcross generations, and random mating populations. It explains how genetic and environmental factors contribute to phenotypic variance.
1. The document discusses components of variation, heritability, types of heritability, genetic advance, environment, and genotype-environment interaction. It defines key terms like phenotypic variation, genotypic variation, broad sense heritability, narrow sense heritability, genetic advance, and genotype-environment interaction.
2. Heritability is the ratio of genotypic variance to phenotypic variance and indicates the proportion of a phenotypic trait caused by genetic factors. Broad sense heritability includes all genetic effects while narrow sense only includes additive genetic effects.
3. Genetic advance measures the expected genetic improvement from selection and depends on genetic variability, heritability, and selection intensity. High genetic advance indicates a trait is
1. The document discusses components of variation, heritability, types of heritability, genetic advance, environment, and genotype-environment interaction. It defines key terms like phenotypic variation, genotypic variation, broad sense heritability, narrow sense heritability, genetic advance, and genotype-environment interaction.
2. Heritability is the ratio of genotypic variance to phenotypic variance and indicates the proportion of the phenotypic variance caused by genetic factors. Broad sense heritability includes all genetic effects while narrow sense only considers additive genetic effects.
3. Genetic advance measures the expected genetic gain from selection and depends on genetic variability, heritability, and selection intensity. High genetic advance indicates a character is
1) Quantitative genetics focuses on inheritance of quantitative traits controlled by multiple genes and influenced by the environment.
2) A basic single-gene model is used to explain quantitative genetic theory, including calculations of population mean, genetic effects, and variance components.
3) More complex multi-gene models and analyses like ANOVA and heritability are then introduced to better capture quantitative traits controlled by numerous genes and environmental influences.
Beyond GWAS QTL Identification and Strategies to Increase YieldKate Barlow
Mohsen Mohammadi, Assistant Professor of Wheat Breeding and Quantitative Genetics, Purdue University
Genetic variation in yield and yield-related traits in an elite population of soft red winter wheat was studied using field-based low-throughput phenotyping and genotyping-by-sequencing markers. QTL conditioning grain yield, grain number per unit area, and kernel weight were identified. QTL result was mined to identify prospects of parents’ complementarity. Strategies for further improvements of grain yield of SRWW populations will be discussed.
বাংলাদেশের অর্থনৈতিক সমীক্ষা ২০২৪ [Bangladesh Economic Review 2024 Bangla.pdf] কম্পিউটার , ট্যাব ও স্মার্ট ফোন ভার্সন সহ সম্পূর্ণ বাংলা ই-বুক বা pdf বই " সুচিপত্র ...বুকমার্ক মেনু 🔖 ও হাইপার লিংক মেনু 📝👆 যুক্ত ..
আমাদের সবার জন্য খুব খুব গুরুত্বপূর্ণ একটি বই ..বিসিএস, ব্যাংক, ইউনিভার্সিটি ভর্তি ও যে কোন প্রতিযোগিতা মূলক পরীক্ষার জন্য এর খুব ইম্পরট্যান্ট একটি বিষয় ...তাছাড়া বাংলাদেশের সাম্প্রতিক যে কোন ডাটা বা তথ্য এই বইতে পাবেন ...
তাই একজন নাগরিক হিসাবে এই তথ্য গুলো আপনার জানা প্রয়োজন ...।
বিসিএস ও ব্যাংক এর লিখিত পরীক্ষা ...+এছাড়া মাধ্যমিক ও উচ্চমাধ্যমিকের স্টুডেন্টদের জন্য অনেক কাজে আসবে ...
How to Fix the Import Error in the Odoo 17Celine George
An import error occurs when a program fails to import a module or library, disrupting its execution. In languages like Python, this issue arises when the specified module cannot be found or accessed, hindering the program's functionality. Resolving import errors is crucial for maintaining smooth software operation and uninterrupted development processes.
How to Build a Module in Odoo 17 Using the Scaffold MethodCeline George
Odoo provides an option for creating a module by using a single line command. By using this command the user can make a whole structure of a module. It is very easy for a beginner to make a module. There is no need to make each file manually. This slide will show how to create a module using the scaffold method.
ISO/IEC 27001, ISO/IEC 42001, and GDPR: Best Practices for Implementation and...PECB
Denis is a dynamic and results-driven Chief Information Officer (CIO) with a distinguished career spanning information systems analysis and technical project management. With a proven track record of spearheading the design and delivery of cutting-edge Information Management solutions, he has consistently elevated business operations, streamlined reporting functions, and maximized process efficiency.
Certified as an ISO/IEC 27001: Information Security Management Systems (ISMS) Lead Implementer, Data Protection Officer, and Cyber Risks Analyst, Denis brings a heightened focus on data security, privacy, and cyber resilience to every endeavor.
His expertise extends across a diverse spectrum of reporting, database, and web development applications, underpinned by an exceptional grasp of data storage and virtualization technologies. His proficiency in application testing, database administration, and data cleansing ensures seamless execution of complex projects.
What sets Denis apart is his comprehensive understanding of Business and Systems Analysis technologies, honed through involvement in all phases of the Software Development Lifecycle (SDLC). From meticulous requirements gathering to precise analysis, innovative design, rigorous development, thorough testing, and successful implementation, he has consistently delivered exceptional results.
Throughout his career, he has taken on multifaceted roles, from leading technical project management teams to owning solutions that drive operational excellence. His conscientious and proactive approach is unwavering, whether he is working independently or collaboratively within a team. His ability to connect with colleagues on a personal level underscores his commitment to fostering a harmonious and productive workplace environment.
Date: May 29, 2024
Tags: Information Security, ISO/IEC 27001, ISO/IEC 42001, Artificial Intelligence, GDPR
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Walmart Business+ and Spark Good for Nonprofits.pdfTechSoup
"Learn about all the ways Walmart supports nonprofit organizations.
You will hear from Liz Willett, the Head of Nonprofits, and hear about what Walmart is doing to help nonprofits, including Walmart Business and Spark Good. Walmart Business+ is a new offer for nonprofits that offers discounts and also streamlines nonprofits order and expense tracking, saving time and money.
The webinar may also give some examples on how nonprofits can best leverage Walmart Business+.
The event will cover the following::
Walmart Business + (https://business.walmart.com/plus) is a new shopping experience for nonprofits, schools, and local business customers that connects an exclusive online shopping experience to stores. Benefits include free delivery and shipping, a 'Spend Analytics” feature, special discounts, deals and tax-exempt shopping.
Special TechSoup offer for a free 180 days membership, and up to $150 in discounts on eligible orders.
Spark Good (walmart.com/sparkgood) is a charitable platform that enables nonprofits to receive donations directly from customers and associates.
Answers about how you can do more with Walmart!"
A workshop hosted by the South African Journal of Science aimed at postgraduate students and early career researchers with little or no experience in writing and publishing journal articles.
Executive Directors Chat Leveraging AI for Diversity, Equity, and InclusionTechSoup
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3 gpb 621 variability analysis
1. VARIABILITY ANALYSIS – PCV, GCV, HERITABILITY AND
GENETIC ADVANCE
GPB 621 – PRINCIPLES OF QUANTITATIVE GENETICS
Class - 3
Dr. K. SARAVANAN
Professor
Department of Genetics and Plant Breeding
Faculty of Agriculture
Annamalai University
2. Dr. K. Saravanan, GPB, AU
• Phenotype = Genotype + Environment
Co-efficient of Variations
• For comparing the variability of different populations or between characters
of the same population, the estimation of co-efficient of variation is required.
The formulae for estimating the phenotypic co-efficient of variation (PCV) and
genotypic co-efficient of variation (GCV) as suggested by Burton (1952) are as
follows.
PCV = GCV =
.
VARIATION ASSOCIATED WITH POLYGENIC RAITS
100
var
X
mean
General
iance
Phenotypic
100
var
X
mean
General
iance
Genotypic
• From Non Replicated data
100
X
PCV X
SD
100
X
GCV X
SE
SD
3. Dr. K. Saravanan, GPB, AU
Analysis of Variance
• In plant breeding, normally Randomized Block Design (RBD) is used for several
experiments.
• Such analysis divides the total variation into two main parts viz., variation
between varieties and variation within varieties, i.e. environmental variation.
• It helps in partitioning of phenotypic variation into genotypic and
environmental components.
• Phenotype = Genotype + Environment
• VPH = VG +VE
.
4. Dr. K. Saravanan, GPB, AU
.
Where r = number of replications
t = number of varieties / treatments
• From the above table, environmental, genotypic and phenotypic variances are estimated, as follows as
suggested by Lush (1940).
• Environmental variance = σ2
e
• Genotypic variance (σ 2
g) = MS1 – MS2 / r
• Phenotypic variance (σ 2
p) = σ 2
g + σ 2
e
• Analysis of variance also permits estimation of phenotypic, genotypic and environmental coefficients of
variation (Burton, 1952).
Source df SS MS Expectations of MS
Replication r-1 - - -
Varieties t-1 SS1 MS1 σ2
e + r σ2
g
Error (r-1) (t-1) SS2 MS2 σ2
e
Total (rt-1)
Analysis of Variance RBD
5. Dr. K. Saravanan, GPB, AU
• Phenotypic coefficient of variation (PCV) = (σ p/mean) x 100
• Genotypic coefficient of variation (GCV) = (σ g/mean) x 100
• Environmental coefficient of variation (ECV) = (σ e/mean) x 100
• Where, σp, σ g and σ e are phenotypic, genotypic and environmental standard
deviations respectively.
• The PCV and GCV are classified as follows as suggested by
Sivasubramanian and Madhavamenon (1973).
• Low : Less than 10%,
• Moderate : 10-20% ,
• High : More than 20%
.
6. Dr. K. Saravanan, GPB, AU
Interpretation of PCV, GCV & ECV
• GCV is higher than PCV
• It indicates that there is little influence of environment on the expression of
character selection for improvement of such character will be rewarding.
• PCV is higher than GCV
• It means that the apparent variation is not only due to genotypes but also due
to the influence of environment. Selection for such traits sometimes may be
misleading.
• ECV is higher than PCV & GCV
• It indicates that environment is playing a significant role in the expression of
such character. Selection for the improvement of such character will be
ineffective.
.
7. Dr. K. Saravanan, GPB, AU
Heritability & Genetic Advance
• Heritability and genetic advance are important selection parameters.
• Heritability estimates along with genetic advance are normally more helpful
in predicting the gain under selection.
Heritability
• The ratio of genotypic variance to the phenotypic variance or total variance is
known as heritability.
• It is generally expressed in percent.
• Thus heritability is the heritable portion of phenotypic variance.
• It is a good index of the transmission of characters from parents to their
offspring.
.
8. Types of heritability
2 types.
1. Broad sense heritability
2. Narrow sense heritability
Dr. K. Saravanan, GPB, AU
9. Broad sense heritability
• It is the ratio of phenotypic variance to total or phenotypic variance.
• It is calculated from total genetic variance which consists of additive, dominance
and epistatic variances.
• 𝐻𝑒𝑟𝑖𝑡𝑎𝑏𝑖𝑙𝑡𝑦 (ℎ2
) =
𝑉𝑔
𝑉𝑝
=
𝑉𝑔
(𝑉𝑔+𝑉𝑒)
• 𝑉
𝑔- Genotypic variance, 𝑉
𝑝 - Phenotypic variance and 𝑉
𝑒 - Environmental variance.
Dr. K. Saravanan, GPB, AU
Co-heritability
• The analysis of covariance permits estimation of co-heritability for related
characters
• Co-heritability between characters x and y = (σgxy / σpxy ) x 100
• Where, σgxy = genotypic covariance, σpxy = phenotypic covariance
10. Features of broad sense heritability
•It can be estimated from both parental as well as
segregating populations.
•It is estimated from total genetic variance.
•It is more useful in animal breeding than in plant
breeding.
Dr. K. Saravanan, GPB, AU
11. Narrow sense heritability
•It is the ratio of additive or fixable genetic
variance to the total or phenotypic
variances.
•𝐻𝑒𝑟𝑖𝑡𝑎𝑏𝑖𝑙𝑡𝑦 ℎ2 =1/2 D/Vp
•D – Additive genetic variance &
•𝑉
𝑝 - Phenotypic variance.
Dr. K. Saravanan, GPB, AU
12. Features of broad sense heritability
• For estimation of narrow sense heritability, crosses
have to be made in a definite fashion.
• It is estimated from additive genetic variance.
• It is useful in both plant and animal breeding.
• It is useful in the selection from segregating
populations.
Dr. K. Saravanan, GPB, AU
13. Scales for heritability
Narrow sense Scale
Below 10 Low
10 to 30 Medium
Above 30 High
Broad sense Scale
Below 30 Low
30 to 60 Medium
Above 60 High
Dr. K. Saravanan, GPB, AU
Suggested by Johnson et al. (1955)
14. Interpretation
Estimates Values Gene effects Selection
Heritability (BS) High Additive & Non-additive May not useful
Heritability (BS) Low Non-additive Ineffective
Heritability (NS) High Additive Effective
Heritability (NS) Low Non-additive Ineffective
Dr. K. Saravanan, GPB, AU
15. Genetic advance
•Improvement in the mean genotypic value of
selected plants over the parental population is
known as genetic advance.
•It is the measure of genetic gain under selection.
Dr. K. Saravanan, GPB, AU
K
x
Vph
x
Vph
Vg
GA
Where, Vg = Genotypic variance, Vph = Phenotypic variance, K = Selection
differential at a particular level of selection intensity.
16. Success of genetic gain
• The success of genetic advance under selection depends on three
main factors.
• Genetic variability: The greater the genetic variability the higher is
the genetic advance and vice versa.
• Heritability: The genetic advance is generally high with the characters
having high heritability and vice versa.
• Selection intensity: The proportions of plants or families selected for
the study is called as selection intensity, which plays important role in
the success of genetic advance.
Dr. K. Saravanan, GPB, AU
17. Scales for genetic advance
The range of genetic advance as percent of mean is classified as suggested by Johnson et al.
(1955)
Genetic advance Scale
Less than 10 Low
10 to 20 Medium
Above 20 High
Dr. K. Saravanan, GPB, AU
18. Interpretation
Estimates Values Gene effects Selection
Genetic advance High Additive Effective
Genetic advance Low Non-additive Ineffective
Dr. K. Saravanan, GPB, AU
19. Interpretation of heritability & genetic advance
Heritability Genetic advance Gene effects Selection
High High Additive Effective
High Low Non-additive May not useful
Low High Additive Effective
Low Low - Ineffective
Dr. K. Saravanan, GPB, AU
20. Dr. K. Saravanan, GPB, AU
Calculation of PCV, GCV, ECV, Heritability, Genetic Advance and Genetic advance as
Per cent of mean.
Problem : An experiment with 20 rice genotypes is given below. These genotypes have
been evaluated in RBD with 3 replications. Workout Variability parameters for grain yield
per plant.
.
GENOTYPES R1 R2 R3
G1 22.21 31.86 22.33
G2 37.46 25.64 27.19
G3 29.26 29.38 28.12
G4 37.11 36.24 36.87
G5 32.36 39.12 32.84
G6 27.4 37.33 27.9
G7 35.39 15.85 36.3
G8 46.02 45.74 46.33
G9 28.35 28.82 29.04
G10 21.19 20.53 20.98
GENOTYPES R1 R2 R3
G11 28.67 28.11 27.88
G12 21.44 23.92 22.16
G13 24.65 24.96 35.18
G14 19.91 30.1 23.42
G15 24.55 24.83 25.02
G16 21.36 22.71 22.09
G17 23.68 23.99 24.22
G18 31.66 49.07 31.84
G19 45.76 49.33 42.99
G20 32.56 37.9 25.2
21. Dr. K. Saravanan, GPB, AU
Genotypes R1 R2 R3 TOTAL
G1 22.21 31.86 22.33 76.4
G2 37.46 25.64 27.19 90.29
G3 29.26 29.38 28.12 86.76
G4 37.11 36.24 36.87 110.22
G5 32.36 39.12 32.84 104.32
G6 27.4 37.33 27.9 92.63
G7 35.39 15.85 36.3 87.54
G8 46.02 45.74 46.33 138.09
G9 28.35 28.82 29.04 86.21
G10 21.19 20.53 20.98 62.7
G11 28.67 28.11 27.88 84.66
G12 21.44 23.92 22.16 67.52
G13 24.65 24.96 35.18 84.79
G14 19.91 30.1 23.42 73.43
G15 24.55 24.83 25.02 74.4
G16 21.36 22.71 22.09 66.16
G17 23.68 23.99 24.22 71.89
G18 31.66 49.07 31.84 112.57
G19 45.76 49.33 42.99 138.08
G20 32.56 37.9 25.2 95.66
TOTAL 590.99 625.43 587.9 1804.32
.
Total no. of genotypes = 20
Total no. of replication = 3
Observation = 20 x 3 = 60
Grand total = 1804.32
Grand Mean = GT/N = 30.07
1. Correction factor = (GT)2/N = 54259.51
2. Raw Sum of Square = 58102.46
3. Total Sum of square = 3842.949
4. Genotype Sum of square = 2907.39
5. Replication Sum of square = 43.40271
6. Error Sum of square = 892.156
22. Dr. K. Saravanan, GPB, AU
ANOVA
SOURCE DF SS MSS F-RATIO
REP 2 43.40 21.70 0.92
GENO 19 2907.39 153.02 6.52
ERROR 38 892.16 23.48
TOTAL 59 3842.95
.
PCV = 27.15
GCV= 21.85
ECV= 16.11
HERITABILITY = 64.78
GA = 10.89
GA as % of mean = 36.23
Environmental Variance = σ2
e
23.48
Genotypic Variance = (σ 2g) = MS1 – MS2 / r 43.18
Phenotypic variance = (σ 2p) = σ 2g + σ 2e 66.66
23. Dr. K. Saravanan, GPB, AU
Problem 2 : Estimation of variability parameters for given ratoon sugar cane
data.
.
ANOVA
SOURCE DF
MSS
No. of
tillers
NO. of
millable
cane
Stalk
length
stalk
inernode
length
Single
stalk
weight
Juice brix
percent
Juice
purity
percent
CCS per
cent
Cane
yield
Sugar
yield
Replication 1 73.04 56.26 0.0002 4.27 0.00001 0.31 0.31 0.19 48.6 1.19
Genotypes 29 1539.51 587.94 0.13 5.51 0.26 5.02 6.11 2.48 2537.84 39.42
Error 29 103.26 67.62 0.04 2.03 0.04 0.45 2.65 0.44 59.49 1.47
Mean 180.44 105.72 2.13 12.39 1.39 18.25 92.09 11.82 120.64 14.03
Meter cm kg t/ha t/ha