gwas data big data programming database qtl mapping python data mining snp soil ph soil fertility r code genotype allele phenotype anova drought dictionary tuple list string numbers variable clustering machine learning artificial intelligence sql canopy temperature high throughput phenotyping drought tolerance canopy closure canopy coverage . light interception . association mapping soybean genomewide association studies generalized linear model glm fixed effect model fem stomatal conductance gc fixed and random model circulating probability uni farmcpu oxygen isotope ratio d18o carbon isotope ratio d13c carbon isotope discrimination cid best linear unbiased prediction blup abscisic acid aba plant breeding r programming narrow sense heritability broad sense heritability circular manhattan plots qtl qqplot graphs manhattan bglr genomic selection bayesion association statistical model calcium nutrients plant nutrient gene hwe population genetics frequncy model trait variance heritability quantitative genetics breeding value gene substitution deviance science flooding agricultural oxygen physiology response plant aba signaling stomata abiotic stress water stress water breeding seed rates experiment
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