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Imatinib and Beyond: Protein Kinase
Inhibitors as Cancer Therapeutics
Protein Kinases as Drug Targets
Problem:
There are over 500 protein kinases encoded by the
human genome.
No/yes
sufficient specificity
for clinical benefit
There are at least 120 members of the
tyrosine kinase family alone
Can a drug target
just one?
All of these kinases have presumably
evolved from a common ancestor and have
at least one substrate (ATP) in common
Protein Kinases: Targets for Cancer Chemotherapy
enzyme
OH
enzyme
O
P O
O -
-
OPO4
2-
ATP ADPprotein
kinase
phosphatase
PP
Ras-GDP
Ras-GTP
Raf Raf
MEK MEK-P
MAPK
MAPK-P
proliferation
growth factor
growth factor receptor
outside
inside
adaptor
MEK-Ser MEK-Ser-PO4
2-
inactive active
MEK-Ser MEK-Asp -
inactive active
MEK gene mutated MEK gene
OH could be Ser, Thr, Tyr
OFF ON
MEK-
HSC MPP
CLP
CMP
B cells
NK cells
T cells
dendritic cells
monocytes/macrophages
neutrophils
basophils
mast cells
eosinophils
erythrocytes
megakaryocytes - platelets
Hematopoiesis in CML
multipotent
stem cells
multipotent
progenitor
oligopotent
progenitor differentiated cell types
symptoms
• fever
• fatigue
• bleeding
Blast cells: transformed
immature precursors
Imatinib and Related Drugs Target Philadelphia
Chromosome Positive CML
• BCR-ABL fusion creates a dys-regulated
tyrosine kinase that drives the proliferation
of CML clones
protein kinase active site
bind ATP
bind target protein
substrate
imatinib
specific kinase inhibition
A priori, targeting the protein
substrate binding site might be
expected to provide more
specificity, but…………………
Imatinib competes with ATP for
binding to the BcrAbl Kinase
The Imatinib Experience
• 82% of patients achieve a complete cytogenetic response (65-85%)
• majority achieve a major molecular response (40-60%)
• 7 year overall survival rate 90%
• event free survival rate 81% (65-85%)
Positives
results from the International Randomized Study of Interferon
Versus STI571 (IRIS) trial 7-year follow up
Blood (2008) 112, 186various studies from 2003-2008
Gambacorti-Passerini and Piazza
(2014) Am. J. Hematol
Persons with CML can now be expected to have a
normal life expectancy when treated with TKIs.
• Imatinib, however, does not destroy cancer stem cells
• If you discontinue imatinib, CML returns
• Imatinib is the perfect drug because once you are on it, you are
on it forever
If you place a cancer cell under selective pressure for long enough without killing
it, what will happen?
The Imatinib Experience (Continued)
Negatives
• Current costs ~$100,000 annually
Negatives
• 18% of patients do not achieve a complete cytogenetic response
• 10% of patients who achieve a complete cytogenetic response lose their
response
• 4-8% of patients are intolerant to imatinib
The Imatinib Experience (Farmaco Resistenza)
mutated kinase active site
bind ATP
bind target protein
substrate
imatinib
kinase activity
the mutated kinase must still
bind ATP and have kinase
activity to drive proliferation
resistance can occur via pre-existing or
new mutations in BRC-ABL
Since imatinib and ATP bind to the same site there are a
limited number of degrees of freedom through which an
enzyme can become resistant to imatinib and still bind ATP
Dasatinib
• A second generation BRC-ABL inhibitor used to treat chronic myeloid leukemia
• Approved for all phases of Philadelphia-positive CML with resistance or
tolerance to prior therapy, including imatinib
1st
and 2nd
Generation BCR-ABL Inhibitors
Dasatinib
This chemistry added to improve drug’s
pharmacological properties, not
needed for activity
Dasatinib lacks
all this extra
chemistry
destra/rightsinistra/left
chiudi gli occhi e strabismo
Comparison of Abl Kinase Structure with Dasatinib
and Imatinib Bound
extra functional groups
of imatinib bind to a
hydrophobic pocket in
Abl kinase not needed
for binding ATP: imparts
specificity
steric clashes with
extra functional
groups block active
conformation
mutations in this
region can interfere
with imatinib
binding without
affecting ATP or
dasatinib binding
ATP binding pocket
dramatic differences
in activation loop
notorious 315 mutation
closer to ATP binding
site affects binding of all
inhibitors
lucky
imatinib
dasatinib
left
right
dasatinib may have less
specificity than imatinib
Multikinase Inhibitory Panels of
BCR-ABL Inhibitors
Imatinib use for cancers other than CML, c-KIT/PDGF-R based cancers like
gastrointestinal stromal tumors
However, in a single-institution study, 37% of bleeding episodes (any grade)
occurred in patients without thrombocytopenia.[33]
Adverse Events with Dasatinib
Bleeding Related Events (mostly associated with severe thrombocytopenia):
CNS hemorrhages, including fatalities, have occurred. Severe gastrointestinal
hemorrhage may require treatment interruptions and transfusions. Use
SPRYCEL(dasatinib) with caution in patients requiring medications that inhibit
platelet function or anticoagulants.
from full US prescribing information
• myelosuppression
• GI symptoms
• rash
• fluid retention
• bleeding
dealt with by dose reduction or
interruption of treatment
a more specific effect on bleeding beyond reducing platelet number
Hemostasis Overview
Vessel injury
Collagen/VWF
exposure
platelet adhesion/release reaction
platelet aggregation
primary hemostatic plug
platelet fusion/contraction
stable hemostatic plug
tissue factor
blood coagulation
cascade
thrombin
fibrin
thromboxane A2
ADP
serotonin
vasoconstriction
reduced blood
flow
platelets –
thrombocytopenia –
bleeding disorder
Primary Hemostasis – Platelet Adhesion
endothelium
Von Willebrand factor
collagen
platelet
adhesion molecule
receptor
vessel damage
platelets contain receptors that bind subendothelial proteins
exposed upon vessel damage
Primary Hemostasis – Platelet
Activation/Aggregation
platelet activation
release reaction
aggregation
platelet
adhesion molecule
receptor
von Willebrand factor,
fibronectin, vitronectin
ADP
thromboxane A2
clopidogril
aspirin
ADP ADP
Exposure of negatively
charged phospholipids on
the platelet surface
Increased Ca2+
Collagen Signaling and Platelet Aggregation
A member of the Src family of
kinases
The Effect of Dasatinib on Agonist-Induced Platelet
Aggregation
after 2-5 hr of treatment
dasatinib can reach 150
and 100 nM in the
plasma of patients
treated with 140 and 70
mg regimes, respectively
tyrosine
phosphorylation
specific src-family
phosphorylation
Multikinase Inhibitory Panels of
BCR-ABL Inhibitors
Imatinib does not Interfere with Collagen-Induced
Platelet Aggregation or Signaling Pathways
The Effect of Dasatinib on Collagen-Induced Signaling
or Glycoprotein VI
DASATINIB:
• targets the BCR-ABL kinase active site in a manner distinct from imatinib
• is more potent a Abl kinase inhibitor than imatinib and is not affected by some of
the mutations that lead to imatinib resistance
• targets a wider spectrum of protein kinases than does imatinib
• interferes with platelet function by presumably targeting one or more Src kinases
• may be considered as a lead compound for a new class of anti-thrombotic agents
CONCLUSIONS
A Second Second Generation BCR-ABL Inhibitor
Multikinase Inhibitory Panels of
BCR-ABL Inhibitors
Binding Characteristics of BCR-ABL TKI’s
common imatinib
resistance mutations
Application of 2nd
Generation TKIs in a Stepwise
Approach to CML Treatment
A – may respond to inhibitor, evidence
lacking
B – reduced sensitivity to inhibitor
C – compelling clinical evidence
suggests an alternative inhibitor
should be used
D – forget about second generation
inhibitors, try emerging therapies
The experience with certain second generation BCR-Abl
inhibitors has been sufficiently positive to consider their use in
replacing imatinib as a frontline therapy for ECP-CML
Study Protocol: Methods
Rosti et al Blood (2009) 114, 4933 & Cortes et al. JCO e-pub December 14, 2009
Patient eligibility:
• 18 years of age or older
• diagnosis of CP (Ph+
) – CML within less than 6 months
• untreated or treated only with hydroxyurea or anagrelide
Patient exclusion:
• WHO performance status 2 or more
• uncontrolled serious medical conditions
• received prior treatment with any investigational drug
Cytogenetic response (CyR) :
• complete, zero Ph+
chromosomes in 20 metaphases
• partial, 0-35% Ph+
metaphases
• minor, 35-95% Ph+
metaphases
Study Protocol: Methods
Rosti et al Blood (2009) 114, 4933 & Cortes et al. JCO e-pub December 14, 2009
Molecular response (MR) :
• complete, undetectable BRC-ABL transcripts in 105
cells
• major, BCR-ABL/ABL transcript ratio of less than 0.1%
Complete Hematological Response (CHR) :
• normalization of peripheral blood counts
• normal differential
• no splenomegaly
BCR
ABL
CML: Complete Molecular Remission
polymerase chain reaction (PCR)
Hematological, Cytogenetic, and Molecular
Responses in the European Study
primary endpoint CCgR at 12 year
expectation for imatinib (50-70%)
< 50% response to nilotinib (no interest)
70% response to nilotinib (interest)
nilotinib dose: 400 mg twice daily
major molecular response obtained in 52
% of patients by 3 months and 85% by
12 months
Kinetics of Molecular Responses to Nilotinib
adverse effects manageable with does reductions
Cytogenetic, and Molecular Responses in the MD
Anderson Study
compare with historical data from MD Anderson patients treated with imatinib
• 6-month CCyR: 96% with nilotinib v 45% with sd imatinib
• 12-month CCyR: 97% with nilotinib v 70/80% with hd/sd imatinib, respectively
• 12-month MMR: 81% with nilotinib v 46/54% with sd/hd imatinib, respectively
major difference between nilotinib and imatinib is the earlier occurrence of the
response with nilotinib and an improved molecular response
Do either of these parameters matter in terms of patient performance and overall
survival??
September 1, 2011 — The US Food
and Drug Administration (FDA)
recently granted accelerated
approval to crizotinib (Xalkori, Pfizer)
for the treatment of patients with
advanced-stage nonsmall-cell lung
cancer (NSCLC) that is anaplastic
lymphoma kinase (ALK)-positive.
Only 4-5% of NSCLC is ALK-positive
In PROFILE 1005 (n = 136), the
objective response rate (ORR) was
50%, and that included 1 complete
response and 67 partial responses.
Like many targeted therapies,
crizotinib comes with a hefty price tag.
According to Geno Germano,
president and general manager of
specialty care and oncology at Pfizer,
the drug will cost $9,600 per month, or
$115,000 per year.
Kinase Inhibitors as “Smart” Drugs for Treating Cancer

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Small molecule inhibitors

  • 1.
  • 2. Imatinib and Beyond: Protein Kinase Inhibitors as Cancer Therapeutics
  • 3. Protein Kinases as Drug Targets Problem: There are over 500 protein kinases encoded by the human genome. No/yes sufficient specificity for clinical benefit There are at least 120 members of the tyrosine kinase family alone Can a drug target just one? All of these kinases have presumably evolved from a common ancestor and have at least one substrate (ATP) in common
  • 4. Protein Kinases: Targets for Cancer Chemotherapy enzyme OH enzyme O P O O - - OPO4 2- ATP ADPprotein kinase phosphatase PP Ras-GDP Ras-GTP Raf Raf MEK MEK-P MAPK MAPK-P proliferation growth factor growth factor receptor outside inside adaptor MEK-Ser MEK-Ser-PO4 2- inactive active MEK-Ser MEK-Asp - inactive active MEK gene mutated MEK gene OH could be Ser, Thr, Tyr OFF ON MEK-
  • 5. HSC MPP CLP CMP B cells NK cells T cells dendritic cells monocytes/macrophages neutrophils basophils mast cells eosinophils erythrocytes megakaryocytes - platelets Hematopoiesis in CML multipotent stem cells multipotent progenitor oligopotent progenitor differentiated cell types symptoms • fever • fatigue • bleeding Blast cells: transformed immature precursors
  • 6. Imatinib and Related Drugs Target Philadelphia Chromosome Positive CML • BCR-ABL fusion creates a dys-regulated tyrosine kinase that drives the proliferation of CML clones protein kinase active site bind ATP bind target protein substrate imatinib specific kinase inhibition A priori, targeting the protein substrate binding site might be expected to provide more specificity, but………………… Imatinib competes with ATP for binding to the BcrAbl Kinase
  • 7. The Imatinib Experience • 82% of patients achieve a complete cytogenetic response (65-85%) • majority achieve a major molecular response (40-60%) • 7 year overall survival rate 90% • event free survival rate 81% (65-85%) Positives results from the International Randomized Study of Interferon Versus STI571 (IRIS) trial 7-year follow up Blood (2008) 112, 186various studies from 2003-2008 Gambacorti-Passerini and Piazza (2014) Am. J. Hematol Persons with CML can now be expected to have a normal life expectancy when treated with TKIs.
  • 8. • Imatinib, however, does not destroy cancer stem cells • If you discontinue imatinib, CML returns • Imatinib is the perfect drug because once you are on it, you are on it forever If you place a cancer cell under selective pressure for long enough without killing it, what will happen? The Imatinib Experience (Continued) Negatives • Current costs ~$100,000 annually
  • 9. Negatives • 18% of patients do not achieve a complete cytogenetic response • 10% of patients who achieve a complete cytogenetic response lose their response • 4-8% of patients are intolerant to imatinib The Imatinib Experience (Farmaco Resistenza) mutated kinase active site bind ATP bind target protein substrate imatinib kinase activity the mutated kinase must still bind ATP and have kinase activity to drive proliferation resistance can occur via pre-existing or new mutations in BRC-ABL Since imatinib and ATP bind to the same site there are a limited number of degrees of freedom through which an enzyme can become resistant to imatinib and still bind ATP
  • 10. Dasatinib • A second generation BRC-ABL inhibitor used to treat chronic myeloid leukemia • Approved for all phases of Philadelphia-positive CML with resistance or tolerance to prior therapy, including imatinib
  • 11. 1st and 2nd Generation BCR-ABL Inhibitors Dasatinib This chemistry added to improve drug’s pharmacological properties, not needed for activity Dasatinib lacks all this extra chemistry destra/rightsinistra/left chiudi gli occhi e strabismo
  • 12. Comparison of Abl Kinase Structure with Dasatinib and Imatinib Bound extra functional groups of imatinib bind to a hydrophobic pocket in Abl kinase not needed for binding ATP: imparts specificity steric clashes with extra functional groups block active conformation mutations in this region can interfere with imatinib binding without affecting ATP or dasatinib binding ATP binding pocket dramatic differences in activation loop notorious 315 mutation closer to ATP binding site affects binding of all inhibitors lucky imatinib dasatinib left right dasatinib may have less specificity than imatinib
  • 13. Multikinase Inhibitory Panels of BCR-ABL Inhibitors Imatinib use for cancers other than CML, c-KIT/PDGF-R based cancers like gastrointestinal stromal tumors
  • 14. However, in a single-institution study, 37% of bleeding episodes (any grade) occurred in patients without thrombocytopenia.[33] Adverse Events with Dasatinib Bleeding Related Events (mostly associated with severe thrombocytopenia): CNS hemorrhages, including fatalities, have occurred. Severe gastrointestinal hemorrhage may require treatment interruptions and transfusions. Use SPRYCEL(dasatinib) with caution in patients requiring medications that inhibit platelet function or anticoagulants. from full US prescribing information • myelosuppression • GI symptoms • rash • fluid retention • bleeding dealt with by dose reduction or interruption of treatment a more specific effect on bleeding beyond reducing platelet number
  • 15. Hemostasis Overview Vessel injury Collagen/VWF exposure platelet adhesion/release reaction platelet aggregation primary hemostatic plug platelet fusion/contraction stable hemostatic plug tissue factor blood coagulation cascade thrombin fibrin thromboxane A2 ADP serotonin vasoconstriction reduced blood flow platelets – thrombocytopenia – bleeding disorder
  • 16. Primary Hemostasis – Platelet Adhesion endothelium Von Willebrand factor collagen platelet adhesion molecule receptor vessel damage platelets contain receptors that bind subendothelial proteins exposed upon vessel damage
  • 17. Primary Hemostasis – Platelet Activation/Aggregation platelet activation release reaction aggregation platelet adhesion molecule receptor von Willebrand factor, fibronectin, vitronectin ADP thromboxane A2 clopidogril aspirin ADP ADP Exposure of negatively charged phospholipids on the platelet surface Increased Ca2+
  • 18. Collagen Signaling and Platelet Aggregation A member of the Src family of kinases
  • 19. The Effect of Dasatinib on Agonist-Induced Platelet Aggregation after 2-5 hr of treatment dasatinib can reach 150 and 100 nM in the plasma of patients treated with 140 and 70 mg regimes, respectively tyrosine phosphorylation specific src-family phosphorylation
  • 20. Multikinase Inhibitory Panels of BCR-ABL Inhibitors
  • 21. Imatinib does not Interfere with Collagen-Induced Platelet Aggregation or Signaling Pathways
  • 22. The Effect of Dasatinib on Collagen-Induced Signaling or Glycoprotein VI
  • 23. DASATINIB: • targets the BCR-ABL kinase active site in a manner distinct from imatinib • is more potent a Abl kinase inhibitor than imatinib and is not affected by some of the mutations that lead to imatinib resistance • targets a wider spectrum of protein kinases than does imatinib • interferes with platelet function by presumably targeting one or more Src kinases • may be considered as a lead compound for a new class of anti-thrombotic agents CONCLUSIONS
  • 24. A Second Second Generation BCR-ABL Inhibitor
  • 25. Multikinase Inhibitory Panels of BCR-ABL Inhibitors
  • 26. Binding Characteristics of BCR-ABL TKI’s common imatinib resistance mutations
  • 27. Application of 2nd Generation TKIs in a Stepwise Approach to CML Treatment A – may respond to inhibitor, evidence lacking B – reduced sensitivity to inhibitor C – compelling clinical evidence suggests an alternative inhibitor should be used D – forget about second generation inhibitors, try emerging therapies
  • 28. The experience with certain second generation BCR-Abl inhibitors has been sufficiently positive to consider their use in replacing imatinib as a frontline therapy for ECP-CML
  • 29. Study Protocol: Methods Rosti et al Blood (2009) 114, 4933 & Cortes et al. JCO e-pub December 14, 2009 Patient eligibility: • 18 years of age or older • diagnosis of CP (Ph+ ) – CML within less than 6 months • untreated or treated only with hydroxyurea or anagrelide Patient exclusion: • WHO performance status 2 or more • uncontrolled serious medical conditions • received prior treatment with any investigational drug
  • 30. Cytogenetic response (CyR) : • complete, zero Ph+ chromosomes in 20 metaphases • partial, 0-35% Ph+ metaphases • minor, 35-95% Ph+ metaphases Study Protocol: Methods Rosti et al Blood (2009) 114, 4933 & Cortes et al. JCO e-pub December 14, 2009 Molecular response (MR) : • complete, undetectable BRC-ABL transcripts in 105 cells • major, BCR-ABL/ABL transcript ratio of less than 0.1% Complete Hematological Response (CHR) : • normalization of peripheral blood counts • normal differential • no splenomegaly
  • 31. BCR ABL CML: Complete Molecular Remission polymerase chain reaction (PCR)
  • 32. Hematological, Cytogenetic, and Molecular Responses in the European Study primary endpoint CCgR at 12 year expectation for imatinib (50-70%) < 50% response to nilotinib (no interest) 70% response to nilotinib (interest) nilotinib dose: 400 mg twice daily
  • 33. major molecular response obtained in 52 % of patients by 3 months and 85% by 12 months Kinetics of Molecular Responses to Nilotinib adverse effects manageable with does reductions
  • 34. Cytogenetic, and Molecular Responses in the MD Anderson Study compare with historical data from MD Anderson patients treated with imatinib • 6-month CCyR: 96% with nilotinib v 45% with sd imatinib • 12-month CCyR: 97% with nilotinib v 70/80% with hd/sd imatinib, respectively • 12-month MMR: 81% with nilotinib v 46/54% with sd/hd imatinib, respectively major difference between nilotinib and imatinib is the earlier occurrence of the response with nilotinib and an improved molecular response Do either of these parameters matter in terms of patient performance and overall survival??
  • 35. September 1, 2011 — The US Food and Drug Administration (FDA) recently granted accelerated approval to crizotinib (Xalkori, Pfizer) for the treatment of patients with advanced-stage nonsmall-cell lung cancer (NSCLC) that is anaplastic lymphoma kinase (ALK)-positive. Only 4-5% of NSCLC is ALK-positive In PROFILE 1005 (n = 136), the objective response rate (ORR) was 50%, and that included 1 complete response and 67 partial responses. Like many targeted therapies, crizotinib comes with a hefty price tag. According to Geno Germano, president and general manager of specialty care and oncology at Pfizer, the drug will cost $9,600 per month, or $115,000 per year. Kinase Inhibitors as “Smart” Drugs for Treating Cancer

Editor's Notes

  1. Hemostasis – stopping the flow of blood
  2. A schematic crosstalk between interleukin-6 (IL-6) and collagen signal pathways. Data from this study support a model of crosstalk between collagen-induced and cytokine-mediated signal transducer and activator of transcription 3 (STAT3) signals in platelets. This crosstalk may be active during inflammation when the secretion of the proinflammatory cytokine IL-6 and the membrane shedding of IL-6 receptor (IL-6R; gp80) result in the formation of a IL-6 and soluble IL-6R complex that binds to gp130 on platelets to activate STAT3. The activated STAT3 serves as a protein scaffold to bring the kinase Syk (spleen tyrosine kinase) to the vicinity of the substrate PLCγ2 to enhance or accelerate PLCγ2 phosphorylation in response to collagen stimulation. Activated PLCγ2 could then hydrolyze phosphatidylinositol 4,5-bisphosphate (PIP2) to produce inositol 1,4,5-triphosphate (IP3) to mobilize calcium. GPVI indicates glycoprotein VI; and FcRγ,Fc receptor γ.
  3. In vitro, nilotinib has a 30-fold greater potency inhibiting BRC-ABL than does imatinib.
  4. Hydroxyurea older treatment for CML, Sokal (Age, PB Blasts, Spleen, Platelets)
  5. Adverse effects managed by dose reductions, most were due to biochemical abnormalities