The document provides an overview of IUPAC nomenclature rules for naming organic compounds. It explains that organic compound names have three parts: a prefix, root, and suffix. The prefix indicates functional groups, the root name comes from the number of carbon atoms in the main chain, and the suffix denotes the type of compound. It provides examples of applying the rules to name alkanes, alkenes, alcohols, carboxylic acids, and cyclic and branched compounds.
Basic concepts of organic chemistry such as structural formulas, different kinds of representation, types of isomerism, examples, alkanes, alkenes, alkynes etc.
What is IUPAC naming?
In order to give compounds a name, certain rules must be followed. When naming organic compounds, the IUPAC (International Union of Pure and Applied Chemistry) nomenclature (naming scheme) is used. This is to give consistency to the names. It also enables every compound to have a unique name, which is not possible with the common names used (for example in industry). We will first look at some of the steps that need to be followed when naming a compound, and then try to apply these rules to some specific examples.
Organic compounds are almost 60% of all compounds. because of carbons tendency to form a compound as it has more than1 electron(4electrons) to form covallent compounds. SO a wide range of everything we eat is formed from carbon and hydrogen, which is the second important element to form organic compounds.
[ Visit http://www.wewwchemistry.com ] This is a summary presentation of the introductory topics in Organic Chemistry, prepared according to the Singapore-Cambridge GCE A Level 9647 H2 Chemistry syllabus.
Organic chemistry involves the study of the structure, properties, composition, reactions, and preparation of carbon-containing compounds, which include not only hydrocarbons but also compounds with any number of other elements, including hydrogen (most compounds contain at least one carbon–hydrogen bond), nitrogen, oxygen, halogens, phosphorus, silicon, and sulfur.
This branch of chemistry was originally limited to compounds produced by living organisms but has been broadened to include human-made substances such as plastics. The range of application of organic compounds is enormous and also includes, but is not limited to, pharmaceuticals, petrochemicals, food, explosives, paints, and cosmetics.
Basic concepts of organic chemistry such as structural formulas, different kinds of representation, types of isomerism, examples, alkanes, alkenes, alkynes etc.
What is IUPAC naming?
In order to give compounds a name, certain rules must be followed. When naming organic compounds, the IUPAC (International Union of Pure and Applied Chemistry) nomenclature (naming scheme) is used. This is to give consistency to the names. It also enables every compound to have a unique name, which is not possible with the common names used (for example in industry). We will first look at some of the steps that need to be followed when naming a compound, and then try to apply these rules to some specific examples.
Organic compounds are almost 60% of all compounds. because of carbons tendency to form a compound as it has more than1 electron(4electrons) to form covallent compounds. SO a wide range of everything we eat is formed from carbon and hydrogen, which is the second important element to form organic compounds.
[ Visit http://www.wewwchemistry.com ] This is a summary presentation of the introductory topics in Organic Chemistry, prepared according to the Singapore-Cambridge GCE A Level 9647 H2 Chemistry syllabus.
Organic chemistry involves the study of the structure, properties, composition, reactions, and preparation of carbon-containing compounds, which include not only hydrocarbons but also compounds with any number of other elements, including hydrogen (most compounds contain at least one carbon–hydrogen bond), nitrogen, oxygen, halogens, phosphorus, silicon, and sulfur.
This branch of chemistry was originally limited to compounds produced by living organisms but has been broadened to include human-made substances such as plastics. The range of application of organic compounds is enormous and also includes, but is not limited to, pharmaceuticals, petrochemicals, food, explosives, paints, and cosmetics.
Organic compound nomenclature (ALkanes, ALKYL GROUP, ALKENE, ALKYNES)Tasneem Ahmad
for vedio click on this linkhttps://www.youtube.com/watch?v=ZzIxkWDlf5Q&feature=youtu.be
Organic compound nomenclature (ALkanes, ALKYL GROUP, ALKENE, ALKYNES)
The complete presentation on Organic Compound, IMPORTANCE, PROPERTIES, SOURCE, USED, Nomenclature Of Organic Compound
Hydrocarbon nomenclature
1. Naming Hydrocarbons (nomenclature)
2. Drawing Structures: It’s All Good CH3 C H C H CH3 CH3 CH3 CH3 CH CH CH3 2-butene This is called the “condensed structure” C C C C H H H H H H H H CH3 CH CH CH3 On a test, choose a method that shows all Hs CH3CH=CHCH3 Using brackets can also shorten some formulas: CH3CH2CH2CH2CH2CH3 vs. CH3(CH2)4CH3
3. Basic Naming of Hydrocarbons Hydrocarbon names are based on: 1) type, 2) # of carbons, 3) side chain type and position 1) name will end in -ane, -ene, or -yne 2) the number of carbons is given by a “prefix” 1 meth- 2 eth- 3 prop- 4 but- 5 pent- 6 hex- 7 hept- 8 oct- 9 non- 10 dec- Actually, all end in a, but a is dropped when next to a vowel. E.g. a 6 C alkene is hexene Q - What names would be given to these: 7C, 9C alkane 2C, 4C alkyne 1C, 3C alkene heptane, nonane ethyne, butyne methene, propene
4. Mnemonic for First Four Prefixes First four prefixes • Meth- • Eth- • Prop- • But- Monkeys Eat Peeled Bananas
5. ? Decade Decimal Decathalon Other Prefixes •
Introduction to redox reactions
References
Tindale, Ritchie et al, 2014, Chemistry for CSEC 2nd Edition, Nelson Thornes. p156-159
Electron Transfer in Redox Reactions Todayhttps://www.sewanhakaschools.org
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
2. Naming Organic Compounds
• The name of any organic compound is comprised of three portions:
• PREFIX + ROOT+ SUFFIX
•The prefix identifies any groups attached to the main
chain.
•The root name of the compound is determined from the
number of C atoms in the longest continuous chain.
•The suffix indicates the type of organic compound, and
is placed after the root.
•Example:The suffix for an alkane is –ane.
3. Root names for Carbon Chains and Branches
Roots Number of C
Atoms
meth- 1
eth- 2
prop- 3
but- 4
pent- 5
hex- 6
hept- 7
oct- 8
non- 9
dec- 10
4. Explaining carbon “roots”
The “parent” part of the name tells you how many carbons are in
the main chain of the molecule
• The parent is named based on
the number of carbons
• 1 carbon = “meth”
• So a one-carbon alkane is called
methane
CH4
• 2 carbons = “eth”
• So a two carbon alkane is called
ethane.
CH3CH3
5. 5 carbons = “pent”
6 carbons = “hex”
3 carbons = “prop”
So a three carbon alkane is
called propane.
CH3CH2CH3
4 carbons = “but”
So a four carbon alkane is
called butane.
CH3CH2CH2CH3
6. Putting together a name…
• The rules for IUPAC nomenclature include:
Step 1: Identify the suffix (FUNCTIONAL GROUP)
Step 2 : Find the main chain
Step 2: Number the main chain
Step 3: Identify all prefixes and their position numbers
Step 5: Write the full name: Prefixes-Parent-Suffix
7. Now let’s take a look: Alkanes
• Step 1: Identify the suffix (FUNCTIONAL GROUP)
• This is an alkane
• Step 2: Find the main chain
• Step 3: Number the main chain
• It has 4 carbon atoms
• Step 4: Identify all prefixes and their position numbers
• prefix -but
• Step 5: Write the full name: Prefixes-Parent-Suffix
• Name : Butane
8. • Name the following alkane (shown as both condensed formula and
a displayed formula)
CH3CH2CH2CH2CH2CH3
or
9. Now let’s take a look: Alkenes
• Step 1: Identify the suffix (FUNCTIONAL GROUP)
• This is an alkene (suffix-ene)
• Step 2: Find the main chain
• Step 3: Number the main chain
• It has 4 carbon atoms
• Step 4: Identify all prefixes and their position numbers
• Prefix-but
• Step 5: Write the full name: Prefixes-Parent-Suffix
• Name : Butene
10. Now let’s take a look: Alcohols
• Step 1: Identify the suffix (FUNCTIONAL GROUP)
• This is an alcohol (suffix-ol)
• Step 2: Find the main chain
• Step 3: Number the main chain
• It has 3 carbon atoms
• Step 4: Identify all prefixes and their position numbers
• Prefix-prop
• Step 5: Write the full name: Prefixes-Parent-Suffix
• Name : Propanol
11. Now let’s take a look: Carboxylic acids
• Step 1: Identify the suffix (FUNCTIONAL GROUP)
• This is a carboxylic acid (suffix –anoic acid)
• Step 2: Find the main chain
• Step 3: Number the main chain
• It has 3 carbon atoms
• Step 4: Identify all prefixes and their position numbers
• prefix -prop
• Step 5: Write the full name: Prefixes-Parent-Suffix
• Name : Propanoic acid
12. Now let’s take a look: Rings
• Step 1: Identify the suffix (FUNCTIONAL GROUP)
• This is an alkane
• Step 2: Find the main chain
• Step 3: Number the main chain
• It has 6 carbon atoms
• Step 4: Identify all prefixes and their position numbers (we add the
prefix “cyclo” for rings (all carbons are connected to another carbon
in an enclosed arrangement)
• prefix – cyclo+pent
• Step 5: Write the full name: Prefixes-Parent-Suffix
• Name : cyclopentane
14. Did you get?
1. Pentene
2. Hexanol
3. Hexanoic acid
4. cyclobutane
If you didn’t, review your rules step by step
15. Let’s look at branched chains
• There are a few more rules we must include for branched chains
• Choose the correct ending (-ane for alkanes, -ene for alkenes
• 2. Determine the longest carbon chain.Where a double or triple bond is present, choose the
longest chain that includes this bond.
• 3. Attach a prefix that corresponds to the number of carbons in the parent chain.
• 4. Assign numbers to each carbon of the parent chain. For alkenes the first carbon of the
multiple bond should have the smallest number. For alkanes the first branch (should have the
lowest number.
• 5. Determine the correct name for each branch (e.g. methyl, ethyl)
• 6.Attach the name of the branch, along with its carbon position, to the name of the parent as
a prefix. Separate numbers from words with hyphens. (e.g. 3-methylhexane).
• 7. List branches alphabetically when more than one branch group is present. (e.g. 4-ethyl-2-
methylheptane)
• 8.When two or more substituents are identical, use prefixes such as di-, tri-, tetra, etc. (e.g.
2,4-dimethylhexane). Note that prefixes such as di- and tri- ) are ignored when determining
alphabetical order. (e.g. 2,3,5-trimethyl-4-propylheptane)
• 9.When identical groups are on the same carbon, repeat the number of this carbon in the
name. (e.g. 2,2-dimethylhexane)
16. Let’s look at alkyl groups before
we move on
• Alkyl groups are named similarly to alkanes, based on the
number of carbons in the substituent.
• A substituent of methane, CH4, would be CH3-
• This substituent is called “methyl” where “meth” stands
for one carbon and “yl” stands for substituent (alkyl group).
• A two-carbon alkane is called ethane, CH3CH3. The
corresponding two-carbon fragment is always CH3CH2-,
which is called “ethyl”.
17. So in this case…
• Choose the correct ending. This is an alkane
• 2. Determine the longest carbon chain. This has a 5 carbon chain
• 3. Attach a prefix that corresponds to the number of carbons in the parent chain.
• This would be pentane
• 4. Assign numbers to each carbon of the parent chain. For alkanes the first branch
(should have the lowest number. )
• You would number from left to right, so the CH3 winds up on position # 2&3
carbon.
• If you numbered from the other end, the CH3 would be on #4&5 carbon.
• Always aim for the lowest possible number on the first substituent!
• . Determine the correct name for each branch (e.g. methyl -CH3, ethyl -CH3CH2)
• So far we have branched groups on 2 & 3 carbons atoms + methy+propane
18. • . Attach the name of the branch, along with its carbon position, to the name of
the parent as a prefix. Separate numbers from words with hyphens and
numbers with commas
• 2,3-methylpentane
• 7. List branches alphabetically when more than one branch group is present.
• Branches are the same
• 8.When two or more substituents are identical, use prefixes such as di-, tri-,
tetra, etc. (e.g. 2,4-dimethylhexane). Note that prefixes such as di- and tri- )
are ignored when determining alphabetical order.
• 2,3-dimethylpentane
• 9.When identical groups are on the same carbon, repeat the number of this
carbon in the name. (e.g. 2,2-dimethylhexane)
• Groups on different carbons in this compound
Name of compound: 2,3-dimethylpentane
Continuing…
19. So in this case…
• Choose the correct ending. This is an alkane
• 2. Determine the longest carbon chain. This has a 4 carbon chain
• 3. Attach a prefix that corresponds to the number of carbons in the parent chain.
• This would be butane
• 4. Assign numbers to each carbon of the parent chain. For alkanes the first branch
(should have the lowest number.
• You would number from right to left, so the CH3 winds up on position # 2 carbon.
• If you numbered from the other end, the CH3 would be on #3 carbon.
• Always aim for the lowest possible number on the first substituent!
• . Determine the correct name for each branch (e.g. methyl -CH3, ethyl -CH3CH2)
• So far we have 2 branched groups on # 2 carbon atom + methy + butane
20. • . Attach the name of the branch, along with its carbon position, to the name of
the parent as a prefix. Separate numbers from words with hyphens and
numbers with commas
• 2-methylbutane
• 7. List branches alphabetically when more than one branch group is present.
• Branches are the same
• 8.When two or more substituents are identical, use prefixes such as di-, tri-,
tetra, etc. (e.g. 2,4-dimethylhexane). Note that prefixes such as di- and tri- )
are ignored when determining alphabetical order.
• 2-dimethylbutane
• 9.When identical groups are on the same carbon, repeat the number of this
carbon in the name. (e.g. 2,2-dimethylhexane)
• 2 substituents present on same carbon:2,2-methylbutane
Name of compound: 2,2-dimethylbutane
Continuing…
21. So in this case…
• Choose the correct ending. This is an alkene
• 2. Determine the longest carbon chain. This has a 4 carbon chain
• 3. Attach a prefix that corresponds to the number of carbons in the parent chain.
• This would be butene
• 4. Assign numbers to each carbon of the parent chain. For alkanes the first branch
(should have the lowest number.
• You would number from left to right, so the double bond winds up between
position # 2 and 3 carbon.
• If you numbered from the other end, the double bond winds up between position
# 3 and 4 carbon.
• Always aim for the lowest possible number on the double bond!
• . Determine the correct name for each branch (e.g. methyl -CH3, ethyl -CH3CH2)
• So far we have 1 branched groups on # 3 carbon atom + methy + butene
22. • . Attach the name of the branch, along with its carbon position,
to the name of the parent as a prefix. Separate numbers from words
with hyphens and numbers with commas
• 3-methylbutene
• 7. List branches alphabetically when more than one branch group is present.
• Only one Branch
• 8.When two or more substituents are identical, use prefixes such as di-, tri-, tetra,
etc. (e.g. 2,4-dimethylhexane). Note that prefixes such as di- and tri- ) are ignored
when determining alphabetical order.
• Only one Branch
• 9.When identical groups are on the same carbon, repeat the number of this carbon
in the name. (e.g. 2,2-dimethylhexane)
• Only one Branch
Name of compound: 3-methylbutene
Continuing…
24. Did you get?
1. 2,3-dimethylbutane
2. 2,2,3-trimethylpentane
3. 2,2-dimethylbutene
If you didn’t, review your rules step by step
25. Just as you named organic
compounds from there drawings..you
can draw from their name!
•Try drawing the following compounds
1. 2- methylbutane
2. cyclohexane
3. butene
4. 3-ethyl-2-methylhexene
5. 2-methylpropane
26. References
Tindale, Ritchie et al, 2014, Chemistry for CSEC 2nd Edition, Nelson
Thornes. Chapter 10, p 232-235
• IUPAC Nomenclature -TigerWeb -Towson University
https://tigerweb.towson.edu › www › chapter1-4
• Chemistry -11, Unit 5 Hydrocarbons and energy, Lesson #74
http://www.chalkbored.com/lessons/chemistry-11.htm