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Xia Zhu – Intel at MLconf ATL
This document discusses streaming and online algorithms for graph processing using GraphX on Spark. It proposes moving from static algorithms that recompute the entire graph at each time interval to online algorithms that use incremental machine learning triggered by graph changes. The key aspects of the solution include efficient graph storage for evolving graphs, partitioning algorithms to reduce replication, and on-the-fly indexing methods instead of prebuilding indexes. Performance results show the online algorithms have better convergence rates and lower communication overhead compared to naive recomputation approaches as the graph sizes increase over time.
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- 1. Streaming and OnlineAlgorithms for GraphX Graph Analytics Team Xia (Ivy) Zhu Intel Confidential — Do Not Forward
- 2. Why Streaming Processingon Graph? 2 • New stores join • New users join • New users browse/clicks and buy items • Old users browse/clicks and buy items • New ads added • … • Recommend products based on users’ interest • Recommend products based on users’ shopping habits • Recommend products based on users’ purchasing capability • Place ads which most likely will be clicked by users • … Everyday How To Huge amount of relationships are created each day, Wisely utilize them is important
- 3. Alibaba Is NotAlone, Graphs are Everywhere 3 100B Neuron 100T Relationships 1.23B Users 160B Friendships 1 Trillion Pages 100s T Links Millions of Products and Users 50M Users 1B hours/moth watch Large Biological Cell Networks
- 4. … And GraphsKeep Evolving 4
- 5. Streaming Processing Pipeline 5 Data Stream ETL Graph Creation ML Distributed Messaging System • We are using Kafka for distributed messaging • GraphX as graph processing engine
- 6. 6 What isGraphX • Graph processing engine on Spark • Support Pregel-type vertex programming • Unifies data-parallel and graph-parallel processing Picture Source: GraphX team
- 7. 7 Why GraphX • GraphLab performs well, but standalone • Giraph, open source, scales well, but performance is not good • GraphX supports both table and graph operations • On the same platform, Spark streaming provides basic streaming framework SchemaRDD’s RDD-Based RDDs, Transformations, and Actions Spark Spark Streaming real-time Spark SQL MLLib machine learning DStream’s: Streams of RDD’s Matrices RDD-Based Graphs GraphX graph processing/ machine learning Picture Source: Databricks
- 8. 8 Naïve StreamingDoes not Scale • Current GraphX is designed for static graphs • Current Spark streaming provides limited types of state DStreams • Naïve approach: • Merge table data before going to graph processing pipeline • Re-generate whole graph and re-run ML at each window • Minimal changes to GraphX and Spark Streaming • Straightforward, but does not scale well 180 160 140 120 100 80 60 40 20 0 Throughput vs Latency of Naive Graph Streaming 1 2 3 4 5 6 7 8 9 Latency(s) Sample Point
- 9. Our solution 9 • Static algorithms -> Online algorithms • Merge information at graph phase • Efficient graph store for evolving graph • Better partitioning algorithms to reduce replicas • Static index -> On the fly indexing method (ongoing)
- 10. Static vs OnlineAlgorithms 10 • Static algorithms • Good for re-compute the whole graph at each time instance , and re-run ML • Become increasingly infeasible in Big Data era, given the size and growth rate of graphs • Online algorithms • Incremental machine learning is triggered by changes in the graph • We designed delta updates based online algorithms • Page rank as an example • Same idea is applicable to other machine learning algorithms
- 11. Static vs OnlinePage Rank 11 Static_PageRank // InitialVertexValue (0.0, 0.0) // first messsage initialMessage: msg = alpha/(1.0-alpha) // broadcast to neighbors SendMessage: if (edge.srcAttr._2 > tol) Iterator((edge.dstId, edge.srcAttr_2 * edge.attr)) //Aggregate Messages for each Vertex messageCombiner(a,b) : sum = a+b //Update Vertex vertexProgram(sum) : updates = (1.0 - alpha) * sum (oldPR + updates, updates) Online_PageRank // Initialize vertex value base graph: (0.0, 0.0) incremental graph: old vertices: (lastWindowPR, lastWindowDelta) new vertices: (alpha, alpha) // First Message initialMessage: base graph: msg = alpha/(1.0-alpha) incremental graph: none // broadcast to neighbors SendMessage: oldSrc->newDst: Iterator((edge.dstId,(edge.srcAttr_1 – alpha) * edge.attr)) newSrc->newDst or not converged: Iterator((edge.dstId,edge.srcAttr_2 * edge.attr)) //Aggregate Messages for each Vertex messageCombiner(a,b) : sum = a+b //Update Vertex vertexProgram(sum) : updates = (1.0 - alpha) * sum (oldPR + updates, updates)
- 12. GraphX Data Loadingand Data Structure 12 Edge lists SSrrccIIdd DstId EdgeRDD DDaattaa IInnddeexx Re-HashPartition RRoouuttiinnggTTaabblleePPaarrttiittiioonn VVeerrtteexxRRDDDD RoutingTableMesssage HHaassSSrrccIIdd HHaassDDssttIIdd Replicated Vertex View GGrraapphhIImmppll EEddggeePPaarrttiittiioonn VVeerrtteexxPPaarrttiittiioonn Vid DDaattaa Mask Shippable Vertex Partition VVeerrtteexxPPaarrttiittiioonn Vid DDaattaa Mask
- 13. GraphX Data Loadingand Data Structure 13 Edge lists SSrrccIIdd DstId EdgeRDD DDaattaa Index Re-HashPartition RRoouuttiinnggTTaabblleePPaarrttiittiioonn VVeerrtteexxRRDDDD RoutingTableMesssage HHaassSSrrccIIdd HHaassDDssttIIdd Replicated Vertex View GGrraapphhIImmppll EEddggeePPaarrttiittiioonn VVeerrtteexxPPaarrttiittiioonn Vid DDaattaa Mask Shippable Vertex Partition VVeerrtteexxPPaarrttiittiioonn Vid DDaattaa Mask Static Index Partitioning Algorithm can help reduce the replication factors
- 14. Partitioning Algorithm 14 • Torus-based partitioning • Divide overall partitions to A x B matrix • Vertex’s master partition is decided by Hash function • Replica set is in the same column as master partition (full column), and same row as master partition ( ⁄ + 1 elements starting from master partition) • The intersection between source replica set and target replica set decides where an edge is placed
- 15. Index Structure forGraph Streaming 15 • GraphX uses CSR(Compressed Sparse Row)-based index • Originated from sparse matrix compression • Good for finding all out edges of a source vertex • No support for finding all in edges of a target vertex. Need full table scan • At minimal, need to add CSC(Compressed Sparse Column) for indexing in edges Raw Edge Lists Src Dst Data 3 2 3 5 3 9 5 2 5 3 7 3 8 5
- 16. 8 6 10 6 Dst Data 2 5 9 2 3 3 5
- 17. 6 6 Idx Unique Src 0 3 3 5 5 7 6 8 8 10 CSR Data Src 3 5 5 7 3
- 18. 8 8 10 3 Unique Dst Idx 2 0 3 2 5 4 6 6 9 8 CSC
- 19. Index Structure forGraph Streaming 16 • Both CSR and CSC need firstly sort edge lists and then create index. • Even better way is to build index on the fly • For graph streaming, need to support both fast insert/write and fast search/read • HashMap • Good for exact match, point search • Fast on insert and search • Good for graph with fixed/known size • Need to re-hash when size surpasses capacity • Trees: B-Tree, LSM-Tree (Log Structured Merge Tree), COLA(Cache Oblivious Lookahead Array) • Support both point search and range search • B-Tree good for fast search, slow for insert • LSM-Tree good for fast insert, slow for search • COLA achieves good tradeoff: fast insert and good enough search COLA based index for graph streaming
- 20. Putting Things Together:Our Streaming Pipeline 17 OML + OML + OML + OML + OML …
- 21. Performance - ConvergenceRate 18 1.2 Converage Rate Naive Incremental Normalized Number of Iterations Graph Size ( Num of Edges) 1.0 0.8 0.6 0.4 0.2 0.0 Base +20% +40% +60% +80% +100% +150% +200%