The document discusses ion channelopathies and provides details on the cardiac action potential and the ion channels involved in each phase. It describes the major ion channels that generate the cardiac action potential, including sodium channels, transient outward potassium current, ultra-rapidly activating delayed outward rectifying current, and rapidly activating delayed outward rectifying current. It also discusses channelopathies associated with these ion channels like Brugada syndrome and long QT syndrome.
This document discusses basic terms in electrophysiology and the properties of cardiac cells. It describes two main types of cardiac cells: electrical cells that make up the conduction system and possess the properties of automaticity, excitability, and conductivity; and myocardial cells that make up the muscular walls and possess contractility and extensibility. It explains that cardiac cells at rest are polarized but become depolarized when an electrical impulse causes ions to cross the cell membrane, generating an action potential. The action potential curve consists of five phases: resting phase, rapid depolarization, plateau phase mediated by slow calcium channels, and rapid repolarization as ions return to their resting state.
This document presents a summary of a student's assignment on voltage-gated ion channels. It begins with an introduction to membrane ion channels and an outline of the presentation. It then discusses the basic structure and mechanism of voltage-gated ion channels, describing how the voltage sensor detects changes in membrane potential. The four major types of voltage-gated channels are identified as sodium, calcium, potassium, and chloride channels. Key details are provided about the structure and function of sodium and potassium channels.
Potassium channels are widely distributed ion channels that regulate cell functions by conducting potassium ions across cell membranes. They have a tetrameric structure and a selectivity filter that selectively allows potassium ions to pass through. Potassium channels are regulated by gating and inactivation and come in several types including calcium-activated, inward rectifying, tandem pore domain, and voltage-gated channels. Dysfunctions in potassium channels can lead to diseases.
Action potentials are short term changes in electrical potential across cell membranes in response to stimulation that allow electrical signals to propagate. They involve the movement of ions across the membrane through open channels. The cardiac action potential occurs in five phases: 1) rapid depolarization due to sodium influx; 2) early repolarization from sodium inactivation and potassium activation; 3) plateau from calcium influx; 4) rapid repolarization from potassium efflux; and 5) resting potential set by potassium equilibrium potential. Pacemaker cells additionally exhibit phase 4 diastolic depolarization driven by funny channel opening that leads to spontaneous firing.
This document discusses the different types of ion channels in the heart. It describes how ion channels can be voltage-dependent, opening in response to changes in membrane potential. Voltage-dependent gating is the most common mechanism. Ion channels also have two mechanisms for closure: inactivation during depolarization and deactivation during repolarization. Additionally, ion channels can be ligand-dependent, opening when certain molecules like acetylcholine or ATP bind to the channel. The acetylcholine-activated potassium channel is discussed as a key example of ligand-dependent gating in the heart.
Voltage Gated Calcium Channels (VGCC) and Its Role in Neurological DiseasesAde Wijaya
Voltage-gated calcium channels (VGCCs) play an important role in regulating brain, heart, and muscle function. Dysfunction of VGCCs can lead to neurological conditions and diseases. VGCCs mediate calcium entry from outside the cell and open in response to membrane depolarization. There are several types of VGCCs including L-type, N-type, and T-type calcium channels. VGCCs are involved in various pathways and diseases such as primary afferent pain pathways, thalamocortical circuitry, degeneration of dopaminergic neurons in Parkinson's disease, and drug addiction. Calcium channel blockers have been used successfully to treat some conditions and may be a potential therapeutic approach
Ion channels, types and their importace in managment of diseasesFarazaJaved
This topic covers voltage gated type of ion channel, general structure and functioning of ion channels and involvement of different ion channel types in the pathogenesis as wella as a target for the development of various diseases.
Cardiac action potentials arise from the coordinated movement of ions through membrane channels in cardiac cells. The cardiac action potential has 5 phases: rapid upstroke (phase 0) due to sodium influx, early rapid repolarization (phase 1) mediated by potassium currents, plateau phase (phase 2) maintained by calcium and potassium currents, final rapid repolarization (phase 3) due to potassium currents, and resting phase (phase 4) where the cell prepares for the next action potential. Precisely regulated ion channel function underlies the generation and propagation of action potentials and ensures normal cardiac rhythm.
This document discusses basic terms in electrophysiology and the properties of cardiac cells. It describes two main types of cardiac cells: electrical cells that make up the conduction system and possess the properties of automaticity, excitability, and conductivity; and myocardial cells that make up the muscular walls and possess contractility and extensibility. It explains that cardiac cells at rest are polarized but become depolarized when an electrical impulse causes ions to cross the cell membrane, generating an action potential. The action potential curve consists of five phases: resting phase, rapid depolarization, plateau phase mediated by slow calcium channels, and rapid repolarization as ions return to their resting state.
This document presents a summary of a student's assignment on voltage-gated ion channels. It begins with an introduction to membrane ion channels and an outline of the presentation. It then discusses the basic structure and mechanism of voltage-gated ion channels, describing how the voltage sensor detects changes in membrane potential. The four major types of voltage-gated channels are identified as sodium, calcium, potassium, and chloride channels. Key details are provided about the structure and function of sodium and potassium channels.
Potassium channels are widely distributed ion channels that regulate cell functions by conducting potassium ions across cell membranes. They have a tetrameric structure and a selectivity filter that selectively allows potassium ions to pass through. Potassium channels are regulated by gating and inactivation and come in several types including calcium-activated, inward rectifying, tandem pore domain, and voltage-gated channels. Dysfunctions in potassium channels can lead to diseases.
Action potentials are short term changes in electrical potential across cell membranes in response to stimulation that allow electrical signals to propagate. They involve the movement of ions across the membrane through open channels. The cardiac action potential occurs in five phases: 1) rapid depolarization due to sodium influx; 2) early repolarization from sodium inactivation and potassium activation; 3) plateau from calcium influx; 4) rapid repolarization from potassium efflux; and 5) resting potential set by potassium equilibrium potential. Pacemaker cells additionally exhibit phase 4 diastolic depolarization driven by funny channel opening that leads to spontaneous firing.
This document discusses the different types of ion channels in the heart. It describes how ion channels can be voltage-dependent, opening in response to changes in membrane potential. Voltage-dependent gating is the most common mechanism. Ion channels also have two mechanisms for closure: inactivation during depolarization and deactivation during repolarization. Additionally, ion channels can be ligand-dependent, opening when certain molecules like acetylcholine or ATP bind to the channel. The acetylcholine-activated potassium channel is discussed as a key example of ligand-dependent gating in the heart.
Voltage Gated Calcium Channels (VGCC) and Its Role in Neurological DiseasesAde Wijaya
Voltage-gated calcium channels (VGCCs) play an important role in regulating brain, heart, and muscle function. Dysfunction of VGCCs can lead to neurological conditions and diseases. VGCCs mediate calcium entry from outside the cell and open in response to membrane depolarization. There are several types of VGCCs including L-type, N-type, and T-type calcium channels. VGCCs are involved in various pathways and diseases such as primary afferent pain pathways, thalamocortical circuitry, degeneration of dopaminergic neurons in Parkinson's disease, and drug addiction. Calcium channel blockers have been used successfully to treat some conditions and may be a potential therapeutic approach
Ion channels, types and their importace in managment of diseasesFarazaJaved
This topic covers voltage gated type of ion channel, general structure and functioning of ion channels and involvement of different ion channel types in the pathogenesis as wella as a target for the development of various diseases.
Cardiac action potentials arise from the coordinated movement of ions through membrane channels in cardiac cells. The cardiac action potential has 5 phases: rapid upstroke (phase 0) due to sodium influx, early rapid repolarization (phase 1) mediated by potassium currents, plateau phase (phase 2) maintained by calcium and potassium currents, final rapid repolarization (phase 3) due to potassium currents, and resting phase (phase 4) where the cell prepares for the next action potential. Precisely regulated ion channel function underlies the generation and propagation of action potentials and ensures normal cardiac rhythm.
The document discusses the generation and transmission of cardiac impulses. It describes the specialized conduction system of the heart including the sinoatrial node, atrioventricular node, bundle of His, and Purkinje fibers. It explains the differences between action potentials in pacemaker cells versus muscle cells. Key differences include the ion channels involved and slower rates of depolarization in pacemaker cells. The document also summarizes the transmission of impulses through the heart and reasons for delays at different parts of the conduction system.
Ion channels are pore-forming membrane proteins that selectively transport ions across cell membranes. They are classified based on their gating mechanism (voltage-gated or ligand-gated), the type of ion transported, and their localization. Voltage-gated channels open and close in response to changes in membrane potential, while ligand-gated channels open when specific ligands bind. Dysfunctions in ion channels can cause diseases. Ion channels are important drug targets, and several drugs like tetrodotoxin, ziconotide, benzodiazepines, and lidocaine act by modulating specific ion channels.
This document discusses tyrosine kinases, which are enzymes that transfer phosphate groups and act as on-off switches in cellular functions. Tyrosine kinases are implicated in cancer development and progression. The document describes the structural classification, general characteristics, and mechanism of action of tyrosine kinases. It also discusses kinetic studies of tyrosine kinases like Bruton's tyrosine kinase and applications of tyrosine kinase inhibitors in cancer therapy and other diseases.
Transmembrane ion channels are protein pores that regulate the passage of ions across cell membranes. There are two main types - voltage-gated ion channels, which open and close in response to changes in membrane potential, and ligand-gated ion channels, which open when certain chemical messengers bind to them. Key voltage-gated channels include sodium, calcium, and potassium channels. Major ligand-gated channels are nicotinic acetylcholine receptors, GABAA receptors, glutamate receptors, and ATP-sensitive potassium channels. The discovery and study of ion channels over time has provided crucial insights into nerve signaling and other cellular processes.
It is over 60 years since Hodgkin and
Huxley1 made the first direct recording of
the electrical changes across the neuronal
membrane that mediate the action
potential. Using an electrode placed inside a
squid giant axon they were able to measure a
transmembrane potential of around 260 mV
inside relative to outside, under resting
conditions (this is called the resting membrane
potential). The action potential is a
transient (,1 millisecond) reversal in the
polarity of this transmembrane potential
which then moves from its point of initiation,
down the axon, to the axon terminals. In a
subsequent series of elegant experiments
Hodgkin and Huxley, along with Bernard
Katz, discovered that the action potential
results from transient changes in the permeability
of the axon membrane to sodium (Na+)
and potassium (K+) ions. Importantly, Na+ and
K+ cross the membrane through independent
pathways that open in response to a change
in membrane potential.
As testimony to their pioneering work, the
fundamental mechanisms described by
Hodgkin, Huxley and Katz remain applicable
to all excitable cells today. Indeed, the
predictions they made about the molecular
mechanisms that might underlie the changes
in membrane permeability showed remarkable
foresight. The molecular basis of the action
potential lies in the presence of proteins
called ion channels that form the permeation
pathways across the neuronal membrane.
Although the first electrophysiological
recordings from individual ion channels were
not made until the mid 1970s,2 Hodgkin and
Huxley predicted many of the properties now
known to be key components of their
function: ion selectivity, the electrical basis
of voltage-sensitivity and, importantly, a
mechanism for quickly closing down the
permeability pathways to ensure that the
action potential only moves along the axon in
one direction.
This document discusses ion channels and voltage-gated sodium channels. It describes the molecular architecture of ion channels, including that they consist of subunits containing transmembrane helices and pore loops. It also discusses the different types of ion channels, including voltage-gated, ligand-gated, and mechanically-gated channels. Finally, it provides details on voltage-gated sodium channels, their role in action potentials, classification, gene mutations, and common blockers like tetrodotoxin.
Insulin receptor and mechanism of signallingJuhi Arora
The document summarizes insulin signaling pathways. It describes how insulin binds to its receptor, causing dimerization and autophosphorylation. This leads to recruitment and phosphorylation of IRS and Shc proteins. The IRS pathway involves PI3K and Akt, promoting GLUT4 translocation and glucose uptake. The Shc pathway activates Ras, leading to MAPK cascade and cellular growth/proliferation responses. Key proteins, their roles, and evidence for mechanisms are discussed.
Cell signaling pathways allow communication between cells through the use of intracellular and extracellular messengers. They are broadly classified as pathways initiated by lipid-soluble messengers, like steroid hormones, or water-soluble messengers, like most hormones and neurotransmitters. The pathways involve messenger binding to receptors which then activates intracellular proteins, resulting in changes in gene transcription, ion channels, or enzymatic activity. This leads to cellular responses like changes in metabolism, secretory activity, or proliferation. In orthodontics, these pathways govern processes like osteoblast differentiation during bone formation and osteoclast recruitment during bone resorption in response to mechanical forces.
The patch-clamp technique allows the study of single ion channels in cells. It was developed in the late 1970s and early 1980s by Erwin Neher and Bert Sakmann, who received the Nobel Prize for this work. There are different variations of the patch-clamp technique that provide access to the inside or outside of the cell membrane to study channel properties under various conditions. The technique uses a glass pipette pressed against a cell to form a high resistance seal and then precisely measures electric currents flowing through individual or multiple ion channels.
Neural basis of Memory consolidation and storage Dr Harshith J
- The document discusses neural basis of memory consolidation and storage. It covers different types of memory including implicit, explicit, episodic and semantic memory.
- Key findings from patient H.M.'s case study showed the medial temporal lobe is crucial for converting short-term to long-term memory. It also distinguished between immediate and long-term memory.
- Studies in Aplysia showed mechanisms of different types of implicit memory like habituation, sensitization and associative learning at synaptic level. Areas like hippocampus, amygdala and cerebellum also play important roles in explicit, emotional and procedural memory respectively.
This presentation on "Cell Cycle regulation" takes you to the cell cycle describing the stages and checkpoints involved providing some of the evidences of cell cycle regulation. Then we will move to cyclins and cyclin dependent kinases and the mechanism they follow.
This journey in regulation of cell cycle will take a halt after a general discussion of positive and negative cell cycle regulators.
Thankyou.
The membrane potential arises from separation of charges across the plasma membrane due to unequal distribution of ions such as sodium, potassium, and chloride between the intracellular and extracellular fluids. Nerve and muscle cells have the greatest membrane potential due to their ability to generate rapid changes in potential when stimulated. The resting membrane potential results from small passive leak of potassium out of the cell, generating a potential of around -70 mV. An action potential is initiated when the membrane potential surpasses the threshold, causing voltage-gated sodium channels to open and allow sodium to rush in, rapidly depolarizing the membrane before voltage-gated potassium channels open to repolarize it.
cardiac ion channels and channelopathiesShivani Rao
The document discusses ion channels and their role in generating cardiac action potentials. It begins by defining ion channels as pore-forming proteins that gate the flow of ions across cell membranes. It then describes the key properties of ion channels including selectivity, gating, and their role in establishing membrane potentials. The remainder of the document details the specific ion channels involved in each phase of the cardiac action potential, including the fast sodium current underlying the upstroke in Phase 0, the potassium and chloride currents producing Phase 1 repolarization, the calcium and potassium currents maintaining the Phase 2 plateau, and the currents responsible for Phase 3 repolarization. Pacemaker cell action potentials are also discussed, noting their unique pacemaker potential in Phase 4 and lack of Phase
The patch clamp technique allows researchers to study single or multiple ion channels in cells. It involves pressing a glass pipette against a cell to form a high resistance seal, isolating a patch of membrane. This enables recording of tiny ion channel currents. Variations include cell-attached for intact cells, whole-cell to access the interior, and outside-out to study channels in isolation. The technique was developed in the 1970s-80s and earned Neher and Sakmann the Nobel Prize, as it proved ion channels mediate processes like action potentials.
The cell cycle is the ordered series of events that results in the duplication of one eukaryotic cell into two identical daughter cells. Key regulators of the cell cycle include cyclins and cyclin-dependent kinases (Cdks). Cyclins associate with specific phases of the cell cycle and activate Cdks, which drive cell cycle events by phosphorylating target proteins. A famous example is maturation-promoting factor (MPF), which is a Cdk bound to M cyclin that promotes M phase events like nuclear envelope breakdown. Proper regulation and control of the cell cycle is important for normal growth and replacement of cells, while loss of control can lead to cancer.
Metabolism consists of catabolic and anabolic pathways. Catabolism breaks down molecules and is usually energy-yielding, while anabolism requires energy to build molecules. Pathways are organized into linear, closed loop, or spiral configurations. Metabolic regulation occurs through allosteric regulation, covalent modification, controlling enzyme levels, compartmentalization, and organ specialization. Key control points in glycolysis include hexokinase, phosphofructokinase-1, and pyruvate kinase which are regulated by energy status of the cell.
This document provides an introduction to cardiac action potentials. It describes the five phases of a cardiac action potential: phase 4 (resting phase), phase 0 (depolarization), phase 1 (early repolarization), phase 2 (plateau phase), and phase 3 (rapid repolarization). It explains that cardiac action potentials are initiated by the sinoatrial node and involve movements of ions like sodium, calcium, and potassium through ion channels, causing changes in the cell's membrane potential. These potential changes can be recorded as an electrocardiogram to monitor the heart's electrical activity.
1. This document summarizes the structure and function of synapses in the central nervous system. It describes the basic anatomy of neurons and synapses, different types of synapses, and classification of synapses based on anatomy and physiology.
2. Key electrical events that occur at synapses are discussed, including the release and removal of neurotransmitters and the generation of postsynaptic potentials. Different types of synaptic inhibition are also outlined.
3. The document concludes by reviewing various properties of synapses, such as convergence, divergence, synaptic plasticity and their significance for neural integration and modulation in the nervous system.
The document discusses receptor tyrosine kinases (RTKs), a class of cell surface receptors that possess intrinsic tyrosine kinase activity. RTKs are activated through ligand binding and dimerization, which leads to autophosphorylation and downstream signaling. This signaling involves phosphorylation of proteins by RTKs and recruitment of adapter proteins, and results in cellular responses like cell division, differentiation, and motility. Common to all RTKs are an extracellular ligand-binding domain, a transmembrane domain, an intracellular tyrosine kinase domain, and regulatory domains.
This document provides an overview of membrane potentials and resting membrane potential by Dr. Rashid Mahmood. It defines key terms like excitation, stimulus, and excitable tissues. It explains that the Nernst potential is the diffusion potential level that opposes net ion diffusion through a membrane. Diffusion potentials are +61 mV for sodium and -94 mV for potassium. The Goldman equation is used to calculate diffusion potential when multiple ions are involved. The resting membrane potential of large myelinated nerve fibers is approximately -90 mV, contributed to by the potassium diffusion potential of -94 mV, sodium diffusion potential of +61 mV, and the sodium-potassium pump of -4 mV.
This document discusses anticoagulation in acute coronary syndromes (ACS). It begins by introducing ACS, which includes unstable angina, NSTEMI, and STEMI. ACS is caused by plaque disruption in coronary arteries, activating coagulation. Anticoagulants discussed include unfractionated heparin (UFH), low molecular weight heparin (LMWH), fondaparinux, and bivalirudin. UFH inhibits thrombin but has limitations. LMWH is more predictable and convenient. Fondaparinux selectively inhibits factor Xa. Bivalirudin directly inhibits thrombin. Clinical trials such as OASIS-5 and ACUITY evaluated these
Ventricular septal defects (VSDs) are congenital holes in the wall separating the left and right ventricles of the heart. Henri Roger first described VSDs in 1879. VSDs are classified based on their location, with the main types being membranous, muscular, inlet, and outlet. The size of the defect determines the severity, with smaller defects having little impact and larger defects causing significant left-to-right shunting of blood. Symptoms range from none with small defects to heart failure in infants with large defects. Treatment may involve monitoring for closure, surgery, or device closure depending on the size and impact of the defect.
The document discusses the generation and transmission of cardiac impulses. It describes the specialized conduction system of the heart including the sinoatrial node, atrioventricular node, bundle of His, and Purkinje fibers. It explains the differences between action potentials in pacemaker cells versus muscle cells. Key differences include the ion channels involved and slower rates of depolarization in pacemaker cells. The document also summarizes the transmission of impulses through the heart and reasons for delays at different parts of the conduction system.
Ion channels are pore-forming membrane proteins that selectively transport ions across cell membranes. They are classified based on their gating mechanism (voltage-gated or ligand-gated), the type of ion transported, and their localization. Voltage-gated channels open and close in response to changes in membrane potential, while ligand-gated channels open when specific ligands bind. Dysfunctions in ion channels can cause diseases. Ion channels are important drug targets, and several drugs like tetrodotoxin, ziconotide, benzodiazepines, and lidocaine act by modulating specific ion channels.
This document discusses tyrosine kinases, which are enzymes that transfer phosphate groups and act as on-off switches in cellular functions. Tyrosine kinases are implicated in cancer development and progression. The document describes the structural classification, general characteristics, and mechanism of action of tyrosine kinases. It also discusses kinetic studies of tyrosine kinases like Bruton's tyrosine kinase and applications of tyrosine kinase inhibitors in cancer therapy and other diseases.
Transmembrane ion channels are protein pores that regulate the passage of ions across cell membranes. There are two main types - voltage-gated ion channels, which open and close in response to changes in membrane potential, and ligand-gated ion channels, which open when certain chemical messengers bind to them. Key voltage-gated channels include sodium, calcium, and potassium channels. Major ligand-gated channels are nicotinic acetylcholine receptors, GABAA receptors, glutamate receptors, and ATP-sensitive potassium channels. The discovery and study of ion channels over time has provided crucial insights into nerve signaling and other cellular processes.
It is over 60 years since Hodgkin and
Huxley1 made the first direct recording of
the electrical changes across the neuronal
membrane that mediate the action
potential. Using an electrode placed inside a
squid giant axon they were able to measure a
transmembrane potential of around 260 mV
inside relative to outside, under resting
conditions (this is called the resting membrane
potential). The action potential is a
transient (,1 millisecond) reversal in the
polarity of this transmembrane potential
which then moves from its point of initiation,
down the axon, to the axon terminals. In a
subsequent series of elegant experiments
Hodgkin and Huxley, along with Bernard
Katz, discovered that the action potential
results from transient changes in the permeability
of the axon membrane to sodium (Na+)
and potassium (K+) ions. Importantly, Na+ and
K+ cross the membrane through independent
pathways that open in response to a change
in membrane potential.
As testimony to their pioneering work, the
fundamental mechanisms described by
Hodgkin, Huxley and Katz remain applicable
to all excitable cells today. Indeed, the
predictions they made about the molecular
mechanisms that might underlie the changes
in membrane permeability showed remarkable
foresight. The molecular basis of the action
potential lies in the presence of proteins
called ion channels that form the permeation
pathways across the neuronal membrane.
Although the first electrophysiological
recordings from individual ion channels were
not made until the mid 1970s,2 Hodgkin and
Huxley predicted many of the properties now
known to be key components of their
function: ion selectivity, the electrical basis
of voltage-sensitivity and, importantly, a
mechanism for quickly closing down the
permeability pathways to ensure that the
action potential only moves along the axon in
one direction.
This document discusses ion channels and voltage-gated sodium channels. It describes the molecular architecture of ion channels, including that they consist of subunits containing transmembrane helices and pore loops. It also discusses the different types of ion channels, including voltage-gated, ligand-gated, and mechanically-gated channels. Finally, it provides details on voltage-gated sodium channels, their role in action potentials, classification, gene mutations, and common blockers like tetrodotoxin.
Insulin receptor and mechanism of signallingJuhi Arora
The document summarizes insulin signaling pathways. It describes how insulin binds to its receptor, causing dimerization and autophosphorylation. This leads to recruitment and phosphorylation of IRS and Shc proteins. The IRS pathway involves PI3K and Akt, promoting GLUT4 translocation and glucose uptake. The Shc pathway activates Ras, leading to MAPK cascade and cellular growth/proliferation responses. Key proteins, their roles, and evidence for mechanisms are discussed.
Cell signaling pathways allow communication between cells through the use of intracellular and extracellular messengers. They are broadly classified as pathways initiated by lipid-soluble messengers, like steroid hormones, or water-soluble messengers, like most hormones and neurotransmitters. The pathways involve messenger binding to receptors which then activates intracellular proteins, resulting in changes in gene transcription, ion channels, or enzymatic activity. This leads to cellular responses like changes in metabolism, secretory activity, or proliferation. In orthodontics, these pathways govern processes like osteoblast differentiation during bone formation and osteoclast recruitment during bone resorption in response to mechanical forces.
The patch-clamp technique allows the study of single ion channels in cells. It was developed in the late 1970s and early 1980s by Erwin Neher and Bert Sakmann, who received the Nobel Prize for this work. There are different variations of the patch-clamp technique that provide access to the inside or outside of the cell membrane to study channel properties under various conditions. The technique uses a glass pipette pressed against a cell to form a high resistance seal and then precisely measures electric currents flowing through individual or multiple ion channels.
Neural basis of Memory consolidation and storage Dr Harshith J
- The document discusses neural basis of memory consolidation and storage. It covers different types of memory including implicit, explicit, episodic and semantic memory.
- Key findings from patient H.M.'s case study showed the medial temporal lobe is crucial for converting short-term to long-term memory. It also distinguished between immediate and long-term memory.
- Studies in Aplysia showed mechanisms of different types of implicit memory like habituation, sensitization and associative learning at synaptic level. Areas like hippocampus, amygdala and cerebellum also play important roles in explicit, emotional and procedural memory respectively.
This presentation on "Cell Cycle regulation" takes you to the cell cycle describing the stages and checkpoints involved providing some of the evidences of cell cycle regulation. Then we will move to cyclins and cyclin dependent kinases and the mechanism they follow.
This journey in regulation of cell cycle will take a halt after a general discussion of positive and negative cell cycle regulators.
Thankyou.
The membrane potential arises from separation of charges across the plasma membrane due to unequal distribution of ions such as sodium, potassium, and chloride between the intracellular and extracellular fluids. Nerve and muscle cells have the greatest membrane potential due to their ability to generate rapid changes in potential when stimulated. The resting membrane potential results from small passive leak of potassium out of the cell, generating a potential of around -70 mV. An action potential is initiated when the membrane potential surpasses the threshold, causing voltage-gated sodium channels to open and allow sodium to rush in, rapidly depolarizing the membrane before voltage-gated potassium channels open to repolarize it.
cardiac ion channels and channelopathiesShivani Rao
The document discusses ion channels and their role in generating cardiac action potentials. It begins by defining ion channels as pore-forming proteins that gate the flow of ions across cell membranes. It then describes the key properties of ion channels including selectivity, gating, and their role in establishing membrane potentials. The remainder of the document details the specific ion channels involved in each phase of the cardiac action potential, including the fast sodium current underlying the upstroke in Phase 0, the potassium and chloride currents producing Phase 1 repolarization, the calcium and potassium currents maintaining the Phase 2 plateau, and the currents responsible for Phase 3 repolarization. Pacemaker cell action potentials are also discussed, noting their unique pacemaker potential in Phase 4 and lack of Phase
The patch clamp technique allows researchers to study single or multiple ion channels in cells. It involves pressing a glass pipette against a cell to form a high resistance seal, isolating a patch of membrane. This enables recording of tiny ion channel currents. Variations include cell-attached for intact cells, whole-cell to access the interior, and outside-out to study channels in isolation. The technique was developed in the 1970s-80s and earned Neher and Sakmann the Nobel Prize, as it proved ion channels mediate processes like action potentials.
The cell cycle is the ordered series of events that results in the duplication of one eukaryotic cell into two identical daughter cells. Key regulators of the cell cycle include cyclins and cyclin-dependent kinases (Cdks). Cyclins associate with specific phases of the cell cycle and activate Cdks, which drive cell cycle events by phosphorylating target proteins. A famous example is maturation-promoting factor (MPF), which is a Cdk bound to M cyclin that promotes M phase events like nuclear envelope breakdown. Proper regulation and control of the cell cycle is important for normal growth and replacement of cells, while loss of control can lead to cancer.
Metabolism consists of catabolic and anabolic pathways. Catabolism breaks down molecules and is usually energy-yielding, while anabolism requires energy to build molecules. Pathways are organized into linear, closed loop, or spiral configurations. Metabolic regulation occurs through allosteric regulation, covalent modification, controlling enzyme levels, compartmentalization, and organ specialization. Key control points in glycolysis include hexokinase, phosphofructokinase-1, and pyruvate kinase which are regulated by energy status of the cell.
This document provides an introduction to cardiac action potentials. It describes the five phases of a cardiac action potential: phase 4 (resting phase), phase 0 (depolarization), phase 1 (early repolarization), phase 2 (plateau phase), and phase 3 (rapid repolarization). It explains that cardiac action potentials are initiated by the sinoatrial node and involve movements of ions like sodium, calcium, and potassium through ion channels, causing changes in the cell's membrane potential. These potential changes can be recorded as an electrocardiogram to monitor the heart's electrical activity.
1. This document summarizes the structure and function of synapses in the central nervous system. It describes the basic anatomy of neurons and synapses, different types of synapses, and classification of synapses based on anatomy and physiology.
2. Key electrical events that occur at synapses are discussed, including the release and removal of neurotransmitters and the generation of postsynaptic potentials. Different types of synaptic inhibition are also outlined.
3. The document concludes by reviewing various properties of synapses, such as convergence, divergence, synaptic plasticity and their significance for neural integration and modulation in the nervous system.
The document discusses receptor tyrosine kinases (RTKs), a class of cell surface receptors that possess intrinsic tyrosine kinase activity. RTKs are activated through ligand binding and dimerization, which leads to autophosphorylation and downstream signaling. This signaling involves phosphorylation of proteins by RTKs and recruitment of adapter proteins, and results in cellular responses like cell division, differentiation, and motility. Common to all RTKs are an extracellular ligand-binding domain, a transmembrane domain, an intracellular tyrosine kinase domain, and regulatory domains.
This document provides an overview of membrane potentials and resting membrane potential by Dr. Rashid Mahmood. It defines key terms like excitation, stimulus, and excitable tissues. It explains that the Nernst potential is the diffusion potential level that opposes net ion diffusion through a membrane. Diffusion potentials are +61 mV for sodium and -94 mV for potassium. The Goldman equation is used to calculate diffusion potential when multiple ions are involved. The resting membrane potential of large myelinated nerve fibers is approximately -90 mV, contributed to by the potassium diffusion potential of -94 mV, sodium diffusion potential of +61 mV, and the sodium-potassium pump of -4 mV.
This document discusses anticoagulation in acute coronary syndromes (ACS). It begins by introducing ACS, which includes unstable angina, NSTEMI, and STEMI. ACS is caused by plaque disruption in coronary arteries, activating coagulation. Anticoagulants discussed include unfractionated heparin (UFH), low molecular weight heparin (LMWH), fondaparinux, and bivalirudin. UFH inhibits thrombin but has limitations. LMWH is more predictable and convenient. Fondaparinux selectively inhibits factor Xa. Bivalirudin directly inhibits thrombin. Clinical trials such as OASIS-5 and ACUITY evaluated these
Ventricular septal defects (VSDs) are congenital holes in the wall separating the left and right ventricles of the heart. Henri Roger first described VSDs in 1879. VSDs are classified based on their location, with the main types being membranous, muscular, inlet, and outlet. The size of the defect determines the severity, with smaller defects having little impact and larger defects causing significant left-to-right shunting of blood. Symptoms range from none with small defects to heart failure in infants with large defects. Treatment may involve monitoring for closure, surgery, or device closure depending on the size and impact of the defect.
The document discusses the anatomy, physiology, and pathologies of the pituitary gland. It begins by describing the normal anatomy of the pituitary, including its location and that it is divided into anterior and posterior lobes. It then discusses the hormones produced by the anterior pituitary and various pituitary tumors and masses that can occur, such as prolactinomas, Cushing's disease, and acromegaly. It provides details on evaluating pituitary tumors, treatment options which include surgery, medication, and radiation, and management of specific tumor types.
This document summarizes recent evidence on medical treatments, percutaneous coronary intervention (PCI), and coronary artery bypass grafting (CABG) for stable coronary artery disease. Key findings include:
1) Large clinical trials found no significant difference in outcomes between PCI and optimal medical therapy for stable CAD patients.
2) CABG was shown to reduce mortality, myocardial infarction, and repeat revascularization compared to medical therapy or PCI for multi-vessel disease.
3) For left main coronary artery disease, CABG may be preferable to PCI for patients with high anatomical complexity scores.
4) Ongoing trials like ISCHEMIA are further evaluating optimal revascularization strategies for stable CAD patients with ischemia.
Supraventricular tachycardias are a common clinical problem that originate above the His bundle. The main types discussed are AV nodal reentrant tachycardia, AV reentrant tachycardia mediated by accessory pathways, and atrial tachycardia. AVNRT involves a reentrant circuit within the AV node while AVRT uses an accessory pathway between the atria and ventricles. Atrial tachycardia originates from a focal point in the atria. The document provides details on mechanisms, presentations, diagnoses and treatment of these arrhythmias.
This document discusses left atrial thrombus in patients with rheumatic mitral stenosis. It finds that 26-33% of patients with severe mitral stenosis have left atrial thrombi, which are associated with a higher risk of embolic events. The document classifies different types of left atrial thrombi and examines determinants of thrombus formation like atrial fibrillation, left atrial size, and severity of mitral stenosis. It recommends anticoagulation to reduce thromboembolic risk, noting studies have found anticoagulation facilitates thrombus resolution.
Tetralogy of Fallot (TOF) is a congenital heart defect characterized by four abnormalities: ventricular septal defect, pulmonary stenosis, overriding aorta, and right ventricular hypertrophy. It has been successfully repaired surgically since the 1950s. Current surgical repair in infancy has excellent outcomes, aiming to relieve right ventricular outflow tract obstruction. Long term complications can include pulmonary regurgitation and right heart dysfunction, but most TOF patients now survive well into adulthood thanks to advances in diagnosis and treatment.
The first heart sound occurs at the onset of ventricular contraction. It is made up of several components: the mitral component (M1), which corresponds to mitral valve closure, is the most important. The tricuspid component (T1) follows M1. In some adults, S1 may be audibly split into M1 and the aortic component (A1). Conditions that increase the rate of ventricular pressure rise, like mitral stenosis, cause a louder M1. Those that delay ventricular contraction, like heart block, cause a softer S1. Abnormally wide splitting suggests electrical delays between the ventricles.
The electrical activity of the heart is initiated by the sinoatrial node and spreads through cardiac tissue via the conduction system. The SA node sets the natural rhythm of the heart under normal conditions due to its high rate of spontaneous impulse generation, influenced by the autonomic nervous system. Electrical signals pass from the atria to the ventricles through specialized conduction tissues like the atrioventricular node and bundle of His. The conduction system triggers the contraction of heart muscle and regulates the heart rhythm through electrical gradients and ion channel proteins that control the movement of ions across cell membranes to produce action potentials.
The electrical activity of the heart is initiated by the sinoatrial node and spreads through cardiac tissue via the conduction system. The SA node sets the natural rhythm of the heart due to its high rate of spontaneous impulse generation, influenced by the autonomic nervous system. Electrical signals pass from the atria to the ventricles through the atrioventricular node and bundle of His, then further through the Purkinje system. The movement of ions like sodium and potassium across cell membranes underlies the cardiac action potential and excitation-contraction coupling that drives heart contractions.
This document discusses the physiology of cardiac muscle and the electrophysiology of normal cardiac rhythm. It covers topics like the cardiac action potential, impulse formation and conduction, heterogeneity of action potentials in the heart, and mechanisms of cardiac arrhythmias. The roles of ion channels and the control of rhythmicity by nerves are described. Factors that can precipitate arrhythmias are also listed.
Etiopathogenesis and pharmacotherapy of arrhythmia
a. the pathophysiology of selected disease states and the rationale for drug therapy;
b. the therapeutic approach to management of these diseases;
c. the controversies in drug therapy;
d. the importance of preparation of individualised therapeutic plans based on diagnosis;
e. needs to identify the patient-specific parameters relevant in initiating drug therapy,
and monitoring therapy (including alternatives, time-course of clinical and laboratory
indices of therapeutic response and adverse effects);
f. describe the pathophysiology of selected disease states and explain the rationale for
drug therapy;
g. summarise the therapeutic approach to management of these diseases including
reference to the latest available evidence;
h. discuss the controversies in drug therapy;
i. discuss the preparation of individualised therapeutic plans based on diagnosis; and
j. identify the patient-specific parameters relevant in initiating drug therapy, and
monitoring therapy (including alternatives, time-course of clinical and laboratory indices of therapeutic response and adverse effects).
The document discusses the ion channels that control cardiac muscle contraction and relaxation. It states that cardiac muscle relies on extracellular calcium for contraction and uses ion channels such as voltage-gated sodium and calcium channels, and potassium channels to regulate the cardiac action potential. The calcium channels bring calcium into cardiac cells to initiate contraction, while calcium ATPase and the sodium-calcium exchanger help return calcium levels to normal to allow relaxation. The rhythmic nature of the heart is controlled by pacemaker cells in the sinoatrial node that use ion channels and intracellular signaling to propagate electrical signals throughout the heart.
The document discusses the ion channels that control cardiac muscle contraction and relaxation. It states that cardiac muscle relies on extracellular calcium for contraction and uses ion channels such as voltage-gated sodium and calcium channels, and potassium channels to regulate the cardiac action potential. The calcium channels bring calcium into cardiac cells to initiate contraction, while calcium ATPase and the sodium-calcium exchanger help return calcium levels to normal to allow relaxation. The rhythmic nature of the heart is controlled by pacemaker cells in the sinoatrial node that use ion channels and intracellular signaling to propagate electrical signals throughout the heart.
Properties of cm, plateau potential & pacemaker by Pandian M this PPT for I ...Pandian M
Describe the properties of cardiac muscle including its morphology, electrical, mechanical and metabolic functionsSLOs: After attending lecture & studying the assigned materials, the student will: 1.Describe the general features of cardiac muscle.2.Discuss the light and electron microscopic appearance of cardiac muscle, characteristic features of sarcotubular system.3.Enlist the electrical properties of heart muscle.4.Explain the phases of cardiac muscle action potential5.Explain the nodal action potential.6.Differentiate between cardiac muscle A.P. and nodal A.P., effect of nervous innervation and ions on AP.7.Enumerate and explain the mechanical properties of heart muscle, metabolic functions, characteristic features.
Presentation on Electrical Properties of Cell MembraneRubinaRoy1
Cell membrane has the characteristic property to receive stimulus and convey the message through electrical signals, itself getting depolarized and repolarized.
Ion Channels, Ion transport and Electrical SignallingNelson Ekechukwu
This document provides an overview of ion channels, transporters, and electrical signaling in neurons. It discusses how ion gradients across the neuronal cell membrane are established and maintained by ion pumps and transporters, and how these gradients give rise to the resting membrane potential. It describes how voltage-gated ion channels regulate the permeability of ions like sodium and potassium, allowing for the generation and propagation of action potentials, which transmit electrical signals along axons. Finally, it discusses how calcium channels mediate neurotransmitter release at synapses to enable communication between neurons.
Ion channels are pore-forming membrane proteins that control the flow of ions across cell membranes. There are two main types of ion channels: ligand-gated ion channels, which open when a chemical messenger binds to the channel, and voltage-gated ion channels, which open in response to changes in membrane potential. Ion channels are located throughout neurons, with ligand-gated channels mainly in dendrites and cell bodies and voltage-gated channels concentrated in axons, where they generate and propagate action potentials. Neurotransmitters can directly open ligand-gated ion channels or indirectly alter ion channels by binding to separate receptors and initiating intracellular signaling cascades. Several classes of ion channels are described in the document, including chloride
TOPIC 6 : HUMAN HEALTH AND PHYSIOLOGY ALIAH RUBAEE
The document discusses the resting potential, graded potential, and action potential in neurons. It provides details on:
1) The resting potential of neurons is normally between -60 to -80 mV due to concentrations of potassium and sodium ions inside and outside the cell. The sodium-potassium pump helps maintain this gradient.
2) A graded potential is an intermediate voltage change before an action potential. It involves the opening of voltage-gated potassium and sodium ion channels, making the intracellular voltage more negative or less negative.
3) An action potential is a brief, all-or-nothing increase in voltage caused by the rapid influx of sodium ions through opened voltage-gated channels, followed by the efflux
1. An action potential is a brief change in the membrane potential of a muscle or nerve cell triggered by the stimulation of voltage-gated ion channels.
2. During an action potential, sodium channels open allowing sodium ions to enter the cell, causing rapid depolarization. Then, potassium channels open and sodium channels close, repolarizing the membrane back to its resting potential.
3. The stages of an action potential are resting, depolarization, and repolarization. After an action potential occurs, the cell enters an absolute refractory period where it cannot generate another action potential, followed by a relative refractory period.
Properties of CM, Plateau Potential & Pacemaker.pptxPandian M
Cardiac muscle has unique properties that allow the heart to function as a syncytium.
1) Cardiac cells are branched and joined by intercalated discs containing desmosomes and gap junctions, allowing action potentials to spread between cells.
2) The heart has specialized pacemaker cells in the sinoatrial node that generate action potentials spontaneously due to unstable membrane potentials and funny channels.
3) Cardiac action potentials have a plateau phase due to calcium influx through L-type calcium channels, allowing the heart to contract forcefully for over 200ms.
Ion channels are pore-forming membrane proteins that regulate the flow of ions across cell membranes. There are several types of ion channels classified by their gating mechanism and selectivity for specific ions like potassium, sodium, calcium, and chloride. Voltage-gated ion channels open or close in response to changes in membrane potential, while ligand-gated channels are activated by binding of neurotransmitters or other ligands. Ion channels play crucial roles in generating electrical signals in excitable cells and regulating various cellular processes. Diseases caused by mutations in ion channel genes are known as channelopathies.
This document provides an outline for a lecture on basic cardiac electrophysiology. It covers:
1. The anatomy and physiology of the heart and cardiac myocytes.
2. Electrical activity in cardiac myocytes, including ion concentrations, membrane potential, and action potentials.
3. Cardiac pacemakers, including the sinoatrial node, factors affecting pacemaker firing rates, and overdrive suppression.
4. Cardiac impulse conduction, including the normal conduction pathway and factors affecting conduction velocity.
Individualized Webcam facilitated and e-Classroom USMLE Step 1 Tutorials with Dr. Cray. 1 BMS Unit is 4 hr. General Principles and some Organ System require multiple units to complete in preparation for the USMLE Step 1 A HIGH YIELD FOCUS IN Biochemistry / Cell Biology, Microbiology / Immunology and the 4 P’s-Phiso, Pathophys, Path and Pharm. Webcam Facilitated USMLE Step 2 Clinical Knowledge and Clinical Skills diadactic tutorials /1 Unit is 4 hours, individualized one-on-one and group sessions, Including all Internal Medicine sub-sub-specitialities. For questions or more information.. drcray@imhotepvirtualmedsch.com
1) Action potentials are electrical signals that propagate along excitable cell membranes and are initiated by stimuli. They involve the movement of ions through voltage-gated ion channels.
2) In neurons, an action potential is a brief reversal of the membrane potential followed by repolarization. This allows communication over long distances.
3) Cardiac action potentials have a depolarizing phase, plateau phase, and repolarizing phase due to calcium ion involvement. This allows for sustained contraction of heart muscle.
Voltage Operated channel, Receptor Operated channel, Second messenger Operate...Anantha Kumar
This document discusses different types of ion channels. It begins by describing the general structure and function of ion channels. It then classifies ion channels into three main categories: voltage-operated channels, receptor-operated channels, and second messenger-operated channels. For each category, it provides details on molecular structure, mechanism of gating or activation, examples, and biological roles. It also discusses abnormalities that can result from mutations in some voltage-operated channels.
Cardiac electrophysiology is the study of the electrical activities of the heart. It is used to assess and treat arrhythmias by evaluating electrocardiograms and assessing the risk of future arrhythmias. The normal electrical conduction in the heart begins with an impulse from the sino-atrial node through the atria and atrioventricular node to the ventricles. The cardiac action potential produces contractions through five phases: rapid sodium influx in Phase 0; potassium channel activation and repolarization in Phase 1; calcium influx and balance of potassium efflux in Phase 2; calcium channel closure and potassium efflux in Phase 3; and resting potential in Phase 4.
This document discusses nerve and muscle physiology, including:
1. It describes the different types of ion channels in the plasma membrane, including leak channels, chemically-gated channels, mechanically-gated channels, and voltage-gated channels.
2. It explains the concepts of resting membrane potential, graded potentials, and action potentials in excitable cells like nerves and muscles. Key factors that determine resting membrane potential are the concentration gradients and permeability of ions like sodium and potassium.
3. It provides details on the initiation and propagation of action potentials, which involve the opening and closing of voltage-gated sodium and potassium channels in response to changes in membrane potential.
- Video recording of this lecture in English language: https://youtu.be/Pt1nA32sdHQ
- Video recording of this lecture in Arabic language: https://youtu.be/uFdc9F0rlP0
- Link to download the book free: https://nephrotube.blogspot.com/p/nephrotube-nephrology-books.html
- Link to NephroTube website: www.NephroTube.com
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STUDIES IN SUPPORT OF SPECIAL POPULATIONS: GERIATRICS E7shruti jagirdar
Unit 4: MRA 103T Regulatory affairs
This guideline is directed principally toward new Molecular Entities that are
likely to have significant use in the elderly, either because the disease intended
to be treated is characteristically a disease of aging ( e.g., Alzheimer's disease) or
because the population to be treated is known to include substantial numbers of
geriatric patients (e.g., hypertension).
“Psychiatry and the Humanities”: An Innovative Course at the University of Mo...Université de Montréal
“Psychiatry and the Humanities”: An Innovative Course at the University of Montreal Expanding the medical model to embrace the humanities. Link: https://www.psychiatrictimes.com/view/-psychiatry-and-the-humanities-an-innovative-course-at-the-university-of-montreal
The biomechanics of running involves the study of the mechanical principles underlying running movements. It includes the analysis of the running gait cycle, which consists of the stance phase (foot contact to push-off) and the swing phase (foot lift-off to next contact). Key aspects include kinematics (joint angles and movements, stride length and frequency) and kinetics (forces involved in running, including ground reaction and muscle forces). Understanding these factors helps in improving running performance, optimizing technique, and preventing injuries.
Travel Clinic Cardiff: Health Advice for International TravelersNX Healthcare
Travel Clinic Cardiff offers comprehensive travel health services, including vaccinations, travel advice, and preventive care for international travelers. Our expert team ensures you are well-prepared and protected for your journey, providing personalized consultations tailored to your destination. Conveniently located in Cardiff, we help you travel with confidence and peace of mind. Visit us: www.nxhealthcare.co.uk
Breast cancer: Post menopausal endocrine therapyDr. Sumit KUMAR
Breast cancer in postmenopausal women with hormone receptor-positive (HR+) status is a common and complex condition that necessitates a multifaceted approach to management. HR+ breast cancer means that the cancer cells grow in response to hormones such as estrogen and progesterone. This subtype is prevalent among postmenopausal women and typically exhibits a more indolent course compared to other forms of breast cancer, which allows for a variety of treatment options.
Diagnosis and Staging
The diagnosis of HR+ breast cancer begins with clinical evaluation, imaging, and biopsy. Imaging modalities such as mammography, ultrasound, and MRI help in assessing the extent of the disease. Histopathological examination and immunohistochemical staining of the biopsy sample confirm the diagnosis and hormone receptor status by identifying the presence of estrogen receptors (ER) and progesterone receptors (PR) on the tumor cells.
Staging involves determining the size of the tumor (T), the involvement of regional lymph nodes (N), and the presence of distant metastasis (M). The American Joint Committee on Cancer (AJCC) staging system is commonly used. Accurate staging is critical as it guides treatment decisions.
Treatment Options
Endocrine Therapy
Endocrine therapy is the cornerstone of treatment for HR+ breast cancer in postmenopausal women. The primary goal is to reduce the levels of estrogen or block its effects on cancer cells. Commonly used agents include:
Selective Estrogen Receptor Modulators (SERMs): Tamoxifen is a SERM that binds to estrogen receptors, blocking estrogen from stimulating breast cancer cells. It is effective but may have side effects such as increased risk of endometrial cancer and thromboembolic events.
Aromatase Inhibitors (AIs): These drugs, including anastrozole, letrozole, and exemestane, lower estrogen levels by inhibiting the aromatase enzyme, which converts androgens to estrogen in peripheral tissues. AIs are generally preferred in postmenopausal women due to their efficacy and safety profile compared to tamoxifen.
Selective Estrogen Receptor Downregulators (SERDs): Fulvestrant is a SERD that degrades estrogen receptors and is used in cases where resistance to other endocrine therapies develops.
Combination Therapies
Combining endocrine therapy with other treatments enhances efficacy. Examples include:
Endocrine Therapy with CDK4/6 Inhibitors: Palbociclib, ribociclib, and abemaciclib are CDK4/6 inhibitors that, when combined with endocrine therapy, significantly improve progression-free survival in advanced HR+ breast cancer.
Endocrine Therapy with mTOR Inhibitors: Everolimus, an mTOR inhibitor, can be added to endocrine therapy for patients who have developed resistance to aromatase inhibitors.
Chemotherapy
Chemotherapy is generally reserved for patients with high-risk features, such as large tumor size, high-grade histology, or extensive lymph node involvement. Regimens often include anthracyclines and taxanes.
Pictorial and detailed description of patellar instability with sign and symptoms and how to diagnose , what investigations you should go with and how to approach with treatment options . I have presented this slide in my 2nd year junior residency in orthopedics at LLRM medical college Meerut and got good reviews for it
After getting it read you will definitely understand the topic.
PGx Analysis in VarSeq: A User’s PerspectiveGolden Helix
Since our release of the PGx capabilities in VarSeq, we’ve had a few months to gather some insights from various use cases. Some users approach PGx workflows by means of array genotyping or what seems to be a growing trend of adding the star allele calling to the existing NGS pipeline for whole genome data. Luckily, both approaches are supported with the VarSeq software platform. The genotyping method being used will also dictate what the scope of the tertiary analysis will be. For example, are your PGx reports a standalone pipeline or would your lab’s goal be to handle a dual-purpose workflow and report on PGx + Diagnostic findings.
The purpose of this webcast is to:
Discuss and demonstrate the approaches with array and NGS genotyping methods for star allele calling to prep for downstream analysis.
Following genotyping, explore alternative tertiary workflow concepts in VarSeq to handle PGx reporting.
Moreover, we will include insights users will need to consider when validating their PGx workflow for all possible star alleles and options you have for automating your PGx analysis for large number of samples. Please join us for a session dedicated to the application of star allele genotyping and subsequent PGx workflows in our VarSeq software.
2. • The analysis of the molecular basis of the inherited cardiac
arrhythmias has been the driving force behind the
identification of the ion channels that generate the action
potential.
• The genes encoding all the major ion channels have cloned
and sequenced.
• The studies have revealed greater complexity than heretofore
imagined.
• Many ion channels function as part of macromolecular
complexes in which many components are assembled at
specific sites within the membrane.
3. The Cardiac Action Potential
• The normal sequence and synchronous contraction of the atria and
ventricles require the rapid activation of groups of cardiac cells.
• An activation mechanism must enable rapid changes in heart rate
and also respond to the changes in autonomic tone.
• The propagating cardiac action potential fulfils these roles.
– Phase 4, or the resting potential, is stable at 90 mV in normal working
myocardial cells.
– Phase 0 is the phase of rapid depolarization. The membrane potential
shifts into positive voltage range. This phase is central to rapid
propagation of the cardiac impulse (conduction velocity, 1 m/s).
– Phase 1 is a phase of rapid repolarization. This phase sets the potential for
the next phase of the action potential.
– Phase 2, a plateau phase, is the longest phase. It is unique among
excitable cells and marks the phase of calcium entry into the cell.
– Phase 3 is the phase of rapid repolarization that restores the membrane
potential to its resting value
4. • In general, the resting potential of atrial and ventricular myocytes
during AP phase 4 (resting phase) is stable and negative
(approximately 85 mV) due to the high conductance for K+ of the IK1
channels.
• Upon excitation by electric impulses from adjacent cells, Na
channels activate (open) and permit an inward Na+ current (INa),
which gives rise to phase 0 depolarization (initial upstroke).
• Phase 0 is followed by phase 1 (early repolarization), accomplished
by the transient outward K current (Ito).
• Phase 2 (plateau) represents a balance between the depolarizing L-
type inward Ca2+ current (ICa,L) and the repolarizing ultra-rapidly
(IKur), rapidly (IKr), and slowly (IKs) activating delayed outward
rectifying currents.
5. • Phase 3 (repolarization) reflects the predominance of the delayed
outward rectifying currents after inactivation (closing) of the L-type
Ca2+ channels.
• Final repolarization during phase 3 is due to K+ efflux through the IK1
channels.
• In contrast to atrial and ventricular myocytes, SAN and AVN
myocytes demonstrate slow depolarization of the resting potential
during phase 4.
• This is mainly enabled by the absence of IK1, which allows inward
currents (e.g., pacemaker current [If]) to depolarize the membrane
potential.
• Slow depolarization during phase 4 inactivates most Na+ channels
and decreases their availability for phase 0.
• Consequently, in SAN and AVN myocytes, AP depolarization is
mainly achieved by ICa,L and the T-type Ca2+ current (ICa,T)
6.
7. • The action potentials of pacemaker cells in the sinoatrial (SA)
and atrioventricular (AV) nodes are significantly different from
those in working myocardium.
• The membrane potential at the onset of phase 4 is more
depolarized (50 to 65 mV), undergoes slow diastolic
depolarization, and gradually merges into phase 0.
• The rate of depolarization in phase 0 is much slower than that
in the working myocardial cells and results in slow
propagation of the cardiac impulse in the nodal regions (0.1 to
0.2 m/s).
• Cells in the His-Purkinje system may also show phase 4
depolarization under special circumstances.
8. • The characteristics of the action potential change across the
myocardial wall from endocardium, midmyocardium, to
epicardium.
• Epicardial cells have a prominent phase 1 and the shortest
action potential.
• The action potential duration is longest in the midmyocardial
region
• The average duration of the ventricular action potential
duration is reflected in the QT interval on the ECG.
• Factors that prolong the action potential duration (eg, a
decrease in outward K currents or an increase in inward late
Na current) prolong the action potential duration and the QT
interval on the ECG.
9. • The generation of the action potential and the regional differences
that are observed throughout the heart are the result of the
selective permeability of ion channels distributed on the cell
membrane.
• The ion channels reduce the activation energy required for ion
movement across the lipophilic cell membrane.
• During the action potential, the permeability of ion channels
changes and each ion, eg, X, moves passively down its electro-
chemical gradients (ΔV=[Vm-Vx,] where Vm is the membrane
potential and Vx the reversal potential of ion X) to change the
membrane potential of the cell.
• The electrochemical gradient determines whether an ion moves
into the cell (depolarizing current for cations) or out of the cell
(repolarizing current for cations).
• Homeostasis of the intracellular ion concentrations is maintained by
active and coupled transport processes that are linked directly or
indirectly to ATP hydrolysis.
10. • Ion channels do not function as simple fluid-filled pores, but
provide multiple binding sites for ions as they traverse the
membrane.
• Ions become dehydrated as they cross the membrane as ion-
binding site interaction is favored over ion–water interaction.
• Like an enzyme–substrate interaction, the binding of the
permeating ion is saturable.
• Most ion channels are singly occupied during permeation; certain K
channels may be multiply occupied.
• The equivalent circuit model of an ion channel is that of a resistor.
• The electrochemical potential, V is the driving force for ion
movement across the cell membrane.
11. • Simple resistors have a linear relationship between V and
current I (Ohm’s Law, I=ΔV/R=ΔVg, where g is the channel
conductance).
• Most ion channels have a nonlinear current-voltage
relationship.
• For the same absolute value of V, the magnitude of the
current depends on the direction of ion movement into or
out of the cells.
• This property is termed rectification and is an important
property of K+ channels, they pass little outward current at
positive (depolarized) potentials.
• The molecular mechanism of rectification varies with ion
channel type.
• Block by internal Mg+ and polyvalent cations is the
mechanism of the strong inward rectification demonstrated
by many K+ channels.
12. • Ion channels have 2 fundamental properties, ion permeation
and gating.
• Ion permeation describes the movement through the open
channel.
• The selective permeability of ion channels to specific ions is a
basis of classification of ion channels (eg, Na, K, and Ca2
channels).
• Size, valency, and hydration energy are important
determinants of selectivity.
• The selectivity ratio of the biologically important alkali cations
is high. For example, the Na:K selectivity of sodium channels is
10:1.
13. • Gating is the mechanism of opening and closing of ion channels and
is their second major property.
• Ion channels are also subclassified by their mechanism of gating:
voltagedependent, ligand-dependent, and mechano-sensitive
gating.
• Voltage-gated ion channels change their conductance in response
to variations in membrane potential.
• Voltagedependent gating is the commonest mechanism of gating
observed in ion channels.
• A majority of ion channels open in response to depolarization.
• The pacemaker current channel (If channel) opens in response to
membrane hyperpolarization.
• The steepness of the voltage dependence of opening or activation
varies between channels.
14. • Ion channels have 2 mechanism of closure.
• Certain channels like the Na+ and Ca2+ channels enters a closed
inactivated state during maintained depolarization.
• To regain their ability to open, the channel must undergo a recovery
process at hyperpolarized potentials.
• The inactivated state may also be accessed from the closed state.
• Inactivation is the basis for refractoriness in cardiac muscle and is
fundamental for the prevention of premature re-excitation.
• If the membrane potential is abruptly returned to its hyperpolarized
(resting) value while the channel is open, it closes by deactivation, a
reversal of the normal activation process.
15. • Ligand-dependent gating is the second major gating mechanism of cardiac
ion channels.
• The most thoroughly studied channel of this class is the acetylcholine
(Ach)-activated K channel.
• Acetylcholine binds to the M-2 muscarinic receptor and activates a G
protein–signaling pathway, culminating in the release of the subunits Gαi
and Gβγ.
• The Gβγ subunit activates an inward-rectifying K channel, IKAch that
abbreviates the action potential and decreases the slope of diastolic
depolarization in pacemaker cells.
• IKAch channels are most abundant in the atria and the SA and
atrioventricular nodes.
• IKAch activation is a part of the mechanism of the vagal control of the heart.
• The ATP-sensitive K+ channel, also termed the ADP-activated K+ channel, is
a ligand-gated channel distributed abundantly in all regions of the heart.
16. • The open probability of this channel is proportional to the
[ADP]/[ATP] ratio.
• This channel couples the shape of the action potential to the
metabolic state of the cell.
• Energy depletion during ischemia increases the [ADP]/[ATP]
ratio, activates IK ATP, and abbreviates the action potential.
• The abbreviated action potential results in less force
generation and may be cardioprotective.
• This channel also plays a central role in ischemic
preconditioning.
17. • The mechanosensitive or stretch-activated channels are the least
studied.
• They belong to a class of ion channels that can transduce a physical
input such as stretch into an electric signal through a change in
channel conductance.
• Acute cardiac dilatation is a well-recognized cause of cardiac
arrhythmias.
• Stretch-activated channel are central to the mechanism of these
arrhythmias.
• Blunt chest wall impact at appropriately timed portions of the
cardiac cycle may also result in PVCs or ventricular fibrillation (the
VF of commotio cordis).
• The channels that transduce the impact into an electric event are
unknown.
18. Sodium Channels
• Sodium channels are the arch-type of voltage-gated ion channels.
• By enabling phase 0 depolarization in atrial, ventricular, and
Purkinje APs, INa+ determines cardiac excitability and electrical
conduction velocity.
• The -subunit of cardiac Na channels (Nav1.5, encoded by SCN5A)
encompasses four serially linked homologous domains (DI–DIV),
which fold around an ion-conducting pore.
• Each domain contains six transmembrane segments (S1–S6).
• S4 segments are held responsible for voltage-dependent activation.
• At the end of phase 0, most channels are inactivated and can be
reactivated only after recovery from inactivation during phase 4.
• Some channels remain open or reopen during phases 2 and 3, and
they carry a small late Na current (INaL).
19.
20. • Na channel dysfunction is linked to several inherited
arrhythmia syndromes, emphasizing the important role of this
channel in cardiac electrical activity.
• In LQTS type 3 (LQT3), mutations in SCN5A delay
repolarization, mostly by enhancing INaL.
• Accordingly, drugs that block INaL (e.g., ranolazine, mexiletine)
may effectively shorten repolarization in LQT3 patients.
21. Brugada Syndrome
• BrS is characterized by ST-segment elevation with “coved”
morphology in the right precordial leads and complete or
incomplete right bundle-branch block.
• This ECG pattern is intermittent and may be unmasked by
pharmacological challenge with sodium channel blockers such
as procainamide, flecainide, ajmaline, or pilsicainide.
• The onset of ventricular arrhythmias causes the occurrence of
syncope and may lead to sudden death, usually at rest.
• Known triggers for arrhythmic events are fever and the
consumption of large meals; the latter has been related to
glucose-induced insulin secretion that might enhance ST-
segment elevation.
22. • Brugada syndrome is characterized by prolonged conduction
intervals, right precordial ST-segment elevation, and increased risk
for ventricular tachyarrhythmia.
• Prolonged conduction intervals are attributed to conduction
slowing due to INa reduction.
• ST-segment elevation is hypothesized to be due to preferential
conduction slowing in the right ventricle and/or aggravation of
transmural voltage gradients.
• Ten different genes causally linked to BrS have been reported.
• Loss-of-function mutations of SCN5A (BrS1), the gene encoding for
the cardiac sodium channel, were the first to be identified, and this
gene is currently the only BrS key gene.
• Reduced sodium current and a BrS phenotype can be also due to
mutations in SCN5A-regulating genes: GPD1-L, SCN1B, and SCN3B.
23.
24. • Loss of function mutations in the CACNA1c and CACNB2 genes
encoding for the α and β subunits of the cardiac calcium
channel can also cause BrS and may represent the second
most frequent cause of the disease.
• Management of BrS is based on the use of ICD in selected
high-risk individuals.
• No drug has been definitely proven effective in reducing the
cardiac arrest burden.
25. • Cardiac conduction disease is manifested by progressive
conduction defects at the atrial, atrioventricular, and/or
ventricular level and is commonly associated with SCN5A
mutations that are also linked to Brugada syndrome.
• How a single mutation may cause different phenotypes or
combinations thereof is often not known.
• Dilated cardiomyopathy–linked SCN5A mutations cause
divergent changes in gating, but how such changes evoke
contractile dysfunction and arrhythmia is not understood.
• Finally, mutations in SCN5A have occasionally been linked to
sick sinus syndrome, which includes sinus bradycardia, sinus
arrest, and/or sinoatrial block. SCN5A mutations may impair
sinus node function by slowing AP depolarization or
prolonging AP duration in SAN cells.
26. Transient outward K current (Ito)
• Ito supports early repolarization during phase 1.
• The transient nature of Ito is secondary to its fast activation
and inactivation upon depolarization.
• Ito displays two phenotypes. Ito, fast recovers rapidly from
inactivation, and its α-subunit (Kv4.3) is encoded by KCND3.
Ito, slow recovers slowly from inactivation; its -subunit (Kv1.4)
is encoded by KCNA4.
• Kv4.3 is abundantly expressed in the epicardium and is
responsible for shorter AP duration there compared to
endocardium, where Kv1.4 is expressed to a much lesser
extent.
27. Ultra-rapidly activating delayed outward
rectifying current (IKur)
• KCNA5 encodes the -subunit (Kv1.5) of the channel carrying
Ikur.
• Kv1.5 is mainly expressed in the atria, and IKur is detected only
in atrial myocytes.
• Thus, IKur plays a role in atrial repolarization. It activates
rapidly upon depolarization but displays very slow
inactivation.
• Inactivation accelerates when Kv1.5 is co-expressed with its β
–subunits.
• Genetic studies identified KCNA5 mutations in individuals with
familial AF.
28. Rapidly activating delayed outward rectifying
current (IKr)
• KCNH2, also called the human-ether-a-go-go-related gene (hERG),
encodes the -subunit (Kv11.1) of the channel carrying IKr.
• Belying its name, IKr activation upon depolarization is not rapid, but
inactivation thereafter is very fast, resulting in a small outward K
current near the end of the AP upstroke.
• However, during early repolarization, the channel rapidly recovers
from inactivation to produce large IKr amplitudes during AP phases 2
and 3.
• Next, the channel deactivates (closes) slowly (in contrast to
inactivation, deactivation is a voltage-independent process).
• Under normal conditions, IKr is largely responsible for repolarization
of most cardiac cells.
29. • LQTS type 2, the second most prevalent type of LQTS, is caused by
KCNH2 loss-of-function mutations .
• This translates into AP and QT interval prolongation and may
generate EADs to trigger torsades de pointes.
• KCNH2 mutations reduce IKr, mostly by impairing the trafficking of
Kv11.1 proteins to the sarcolemma.
• Moreover, mutations in KCNE2 also reduce IKr and cause the less
prevalent LQTS type 6.
• Short QT syndrome is a rare disease associated with short QT
intervals and increased risk for atrial and ventricular fibrillation.
• A gain-of-function mutation in KCNH2 is linked to short QT
syndrome type 1.
• The resulting Ikr increase achieved by altered gating hastens
repolarization, thereby shortening AP duration and facilitating
reentrant excitation waves to induce atrial and/or ventricular
arrhythmia.
30. Slowly activating delayed outward rectifying
current (IKs)
• Kv7.1, encoded by KCNQ1, is the -subunit of the channel
responsible for IKs.
• IKs is markedly enhanced by –adrenergic stimulation through
channel phosphorylation by protein kinase A and protein
kinase C.
• This implies that IKs contributes to repolarization, especially
when –adrenergic stimulation is present.
• Accordingly, selective blocking of IKs by chromanol-293B
prolongs AP duration minimally under baseline conditions but
markedly under –adrenergic stimulation.
• Interestingly, KCNQ1 and KCNE1 are also expressed in the
inner ear, where they enable endolymph secretion.
31. • The most common type of LQTS, type 1 (LQT1), is caused by loss-of-
function mutations in KCNQ1.
• The resulting IKs reduction is responsible for prolonged AP
durations and QT intervals.
• Individuals with the less prevalent LQTS type 5 carry loss-of-
function mutations in KCNE1 and display a similar phenotype as
LQT1 patients.
• Loss-of-function mutations in both alleles of KCNQ1 or KCNE1 cause
the very rare Jervell and Lange-Nielsen syndrome (JLNS) type 1 or 2,
respectively.
• KCNQ1 gain-of-function mutations are anecdotally linked to short
QT syndrome (type 2).
• Moreover, an KCNQ1 gainof- function mutation is reported to cause
familial AF by shortening atrial AP duration and facilitating reentry.
32. Inward rectifying current (IK1)
• IK1 stabilizes the resting membrane potential of atrial and
ventricular myocytes during phase 4 and contributes to the
terminal portion of phase 3 repolarization.
• IK1 channels are closed during AP phases 1 and 2. Voltage
dependent block by intracellular Mg2+ underlies channel closing,
while unblocking enables channel opening.
• IK1 is almost absent in SAN and AVN myocytes.
• Its α–subunit (Kir2.1) is encoded by KCNJ2 and consists of one
domain with two transmembrane segments.
• Loss-of-function mutations in KCNJ2 are linked to Andersen- Tawil
syndrome, a rare disease characterized by skeletal developmental
abnormalities, periodic paralysis, and usually nonsustained
ventricular arrhythmia, often associated with prominent U waves
and mild QT interval prolongation (LQTS type 7).
• To date, one KCNJ2 gain-of-function mutation, found in one small
family, is linked to short QT syndrome type 3.
33.
34. Cardiac Ca2+ current (ICa) and intracellular
Ca2+ transients
• The L-type (long-lasting) inward Ca2+ current (ICa,L) is largely
responsible for the AP plateau.
• Ca2+ influx by ICa,L activates Ca2+ release channels (ryanodine
receptor [RyR2]), located in the sarcoplasmic reticulum
membrane.
• Sarcoplasmic reticulum Ca2+ release (Ca2+ transients) via RyR2
channels couples excitation to contraction in myocytes.
• CACNA1C encodes the α-subunit (Cav1.2) of L-type channels
• Beside ICa,L, T-type (tiny) Ca2+ current (ICa,T) is identified in SAN
and AVN myocytes.
• ICa,T is believed to contribute to AP formation in pacemaker
cells.
35. • CACNA1C mutations are linked to Timothy syndrome, a rare multisystem
disease with QT interval prolongation (LQTS type 8), ventricular
tachyarrhythmia, and structural heart disease.
• In Timothy syndrome, CACNA1C mutations delay repolarization by
increasing ICa,L.
• RyR2 mutations cause catecholaminergic polymorphic ventricular
tachycardia, a disease associated with exerciseand emotion-induced
arrhythmia.
• Mutant RyR2 channels permit Ca2+ leakage from the sarcoplasmic
reticulum into the cytoplasm.
• Ca2+ leakage induces extrusion of Ca2+ to the extracellular matrix by the
Na+/Ca2+ exchanger, which exchanges one Ca2+ ion for three Na+ ions.
• By doing so, the Na+/Ca2+ exchanger generates an inward Na+ current,
which underlies delayed afterdepolarization (abnormal depolarization
during phase 4 due to activation of Na+ channels).
• Delayed afterdepolarizations are believed to cause ventricular
tachyarrhythmia.
36. Long QT syndrome
• LQTS is a group of genetically transmitted disorders marked by
QT prolongation and by episodes of syncope and sudden
death due to torsades de pointes.
• QT prolongation and susceptibility to torsades de pointes
results from ion channel dysfunction that prolongs cellular
repolarization.
• This is most often caused by decreased outward potassium
current IKs (LQT1, LQT5) or IKr (LQT2, LQT6), or by enhanced
activity of mutant inward sodium current (LQT3).
• LQTS usually is transmitted in an autosomal dominant pattern.
37. • Mutations of different genes lead to distinct clinical
syndromes.
• Patients with LQT1 classically have a broad-based T wave and
tend to have syncope or sudden death during physical
exercise.
• Patients with LQT2 tend to have a notched or low-amplitude T
wave, and they classically have syncope or sudden death with
sudden auditory stimuli or strong emotion.
• Patients with LQT3 have a long, flat ST segment, a tendency
toward abnormal bradycardia, and a higher incidence of
sudden death during sleep.
38.
39. • In addition to avoiding QT-prolonging drugs and high-intensity
sports, standard treatment of LQTS involves the use of high-
dose beta-blockers.
• Beta-blocker therapy appears to be somewhat less effective in
LQT2 and perhaps useless in LQT3.
• Patients with a history of aborted sudden death, documented
torsades de pointes, or syncope despite beta-blocker therapy
generally should be treated with an implantable cardioverter-
defibrillator (ICD).
40. Short-QT Syndrome
• Short-QT syndrome is described as a disorder characterized by
abbreviated QT interval, ventricular and atrial arrhythmias,
and sudden cardiac death.
• There have been 70 short-QT syndrome cases reported
worldwide, with the mean QTc value in the entire population
of 310 milliseconds.
• Symptomatic (sudden death or cardiac arrest) individuals,
accounting for 25% of the total, tend to present with shorter
QTc (average, 300 milliseconds).
• Quinidine can normalize the QT interval, but its long-term
efficacy is not proven.
• Therefore, an ICD is the only way to prevent sudden death.
41.
42. CPVT
• Catecholaminergic polymorphic ventricular tachycardia (CPVT) was
described in the 1970s.
• Patients present unremarkable resting ECG and a peculiar pattern of
ventricular arrhythmias (bidirectional or polymorphic ventricular
tachycardia) reproducibly triggered by exercise or acute emotion.
• CPVT is characterized by a high incidence of cardiac events among
untreated patients (79% in patients up to 40 years of age) and 30%
incidence of sudden cardiac death.
• Investigations directed to disclose the molecular basis of CPVT led
to the identification of mutations of 2 genes, the ryanodine
receptor RyR255 and the cardiac calsequestrin CASQ2, which are
associated with the autosomal dominant and recessive forms of
CPVT, respectively.
• Both genes are involved in the control of calcium release from the
sarcoplasmic reticulum (SR): RyR2 is the SR calcium-releasing
channel, and CASQ2 is a calcium buffering protein in the SR that
may also exert a regulatory function of RyR2.
43. • CPVT mutations lead to a loss of calcium release inhibition from the
SR during diastole.
• As a consequence, when SR calcium content augments adrenergic
activation, it drives a pathological increase in Ca2+ release (leak) that
leads to delayed afterdepolarization and triggered activity.
• Approximately 60% of CPVT individuals carry an RyR2 mutation.
• No prognostic value is linked to specific RyR2 mutations
• When a CPVT diagnosis is established, beta-blockers should be
administered.
• Although this approach affords protection in the majority of
patients, 30% experience at least 1 arrhythmic event while on
therapy.
• In these cases, an ICD may be indicated.
44. Conclusions
• Ion channel disease offers a paradigm for the understanding
of a molecular lesion in the patient and its translation to
phenotype and eventually management decisions.
• Nonetheless there are many gaps in our understanding,
particularly of incomplete penetrance, risk stratification and
the underlying pathophysiology of some of the conditions.
• Still, progress is rapid, and patients and their families will
continue to benefit as our knowledge and understanding
improves.