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Human
                Genome
      Presented by
  Peyman Ghoraishizadeh

  Department of Obstetric
       &Gynecology
University Of Putra Malaysia
What is a Genome and Gene?
   A genome is an organism’s
    complete set of DNA, including all
    of its genes
   Each genome contains all of the
    information needed to build and
    maintain that organism

   A gene produce a protein
The Physical Structure of the Human
                   Genome
   Nuclear DNA
   The nucleus contains long strands of
    DNA that encode genetic information
    double helix
   DNA contains base, sugar and phosphate
    group
   Two strand are connected to each other
    by chemical pairing of each base
   suitable molecule for carrying our genetic
    information
   Organelle DNA
   Not all genetic information is found
    in nuclear DNA
    Each mitochondrion has its own set
    of genes
   Cells often have multiple
    mitochondria
   Responsible for energy conversion
   The energy-conversion process that
    takes place in the mitochondria
    takes place aerobically
   There are many diseases caused by
    mutations in mitochondrial DNA
    (mtDNA) like deafness
   Ribonucleic Acids
   ribonucleic acid (RNA) is a chain, or
    polymer, of nucleotides with the same
    5' to 3' direction of its strands

   RNA has a 2' oxygen atom that is not
    present in DNA

   uracil takes the place of the thymine
    nucleotide found in DNA
   Structural Genes
   Sequences that code for proteins
    Regulatory Sequences
   makes up a numerically insignificant fraction
    of the genome but provides critical functions
   certain sequences indicate the beginning and
    end of genes, sites for initiating replication
    and recombination

    regulatory sequences are inherited
   Junk DNA
   sequences are components of an organism's
    DNA that do not encode protein sequences
    over 98% of the human genome is
    noncoding DNA   ,[1]
   Other DNA Regions
   Forty to forty-five percent of our
    genome is made up of short sequences
    that are repeated, sometimes hundreds of
    times
   There are numerous forms of "repetitive
    DNA“
   They have some functions such as
    stabilizing the chromosome structure or
    inactivating one of the two X
    chromosomes in developing females, a
    process called X-inactivation
   The most highly repeated sequences
    found so far in mammals are
    called "satellite DNA"
   These sequences are associated with
    chromosome structure and are found at
    the centromeres (or centers)
    and telomeres (ends) of chromosomes
   they do not play a role in the
    coding of proteins, they do play a
    significant role in chromosome
    structure, duplication, and cell
    division
   Haplotype
   is a combination of alleles (DNA sequences) at
    adjacent locations (loci) on a chromosome
     that are transmitted together
   A haplotype may be one locus, several loci, or
    an entire chromosome depending on the
    number of recombination events that have
    occurred between a given set of loci
   A second meaning of the term haplotype is a
    set of single-nucleotide polymorphisms
     (SNPs) on a single chromosome of a
    chromosome pair that are
    associated statistically
   It is thought that these associations, and the
    identification of a few alleles of a haplotype
    sequence, can unambiguously identify all other
    polymorphic sites in its region. Such
    information is very valuable for investigating
    the genetics of common diseases, and has been
    investigated for the human species by the
    International HapMap Project .
What was Human Genome Project
   The Human Genome Project was
    an international research effort to
    determine the sequence of the
    human genome and identify the
    genes that it contains.
   The Project was coordinated by
    the National Institutes of Health
    and the U.S. Department of
    Energy. Additional contributors
    included universities across the
    United States and international
    partners in the United Kingdom,
    France, Germany, Japan, and
    China
   The Human Genome Project
    formally began in 1990 and was
    completed in 2003,2 years ahead of
    its original schedule
   The work of the Human Genome
    Project has allowed researchers to
    begin to understand the blueprint for
    building a person
    researchers learn more about the
    functions of genes and proteins
   this knowledge will have a major
    impact in the fields of medicine,
    biotechnology, and the life sciences
What were the goals of the Human
              Genome Project
   Project goals were to 
   Identify all the approximately 20,000-25,000 genes in human DNA,
   Determine the sequences of the 3 billion chemical base pairs that make up human 
    DNA,
   Store this information in databases,
   Improve tools for data analysis,
   Transfer related technologies to the private sector, and
   Address the ethical, legal, and social issues (ELSI) that may arise from the project.
   The Project also
   aimed to sequence the genomes of several other organisms that are 
    important to medical research, such as the mouse and the fruit fly.
What is DNA sequencing
   Sequencing means determining 
    the exact order of the base pairs 
    in a segment of DNA
   method used by the HGP to 
    produce the finished version of 
    the human genetic code is map-
    based, or BAC-based, sequencing 
   More recently scientists 
    estimated that there are less than
    30,000 human genes. However, 
    we still have to make guesses at 
    the actual number of genes, 
    because not all of the human 
    genome sequence is annotated 
Omic Projects
   International HapMap
    Project 
    that aims to develop 
    a haplotype map (HapMap) of 
    the human genome, which will 
    describe the common patterns of 
    human genetic variation
 HapMap is a key resource for 
    researchers to find genetic variants 
    affecting health, disease and 
    responses to drugs and 
    environmental factors 
Encode DNA
    Encyclopedia of DNA Elements (ENCODE )
   The goal is to find all functional elements in the human genome 
   On 5 September 2012, initial results of the project were released
   These publications combine to show that approximately 20% 
    of noncoding DNA in the human genome is functional while an 
    additional 60% is transcribed with no known function.
   These results demonstrate that gene regulation is far more complex 
    than previously believed.   
Human Genome Project
   YESTERDAY 
Just a half-century ago, very little was known about the  genetic factors that contribute 
   to human disease 
The Human Genome project spurred a revolution in biotechnology innovation around 
   the world
In April 2003, researchers successfully completed the Human Genome Project 
   TODAY
 The Human Genome Project has already fueled the discovery of more than 1,800 
   disease genes 
As a result of the Human Genome Project, today’s researchers can find a gene 
   suspected of causing an inherited disease in a matter of days, rather than the years it 
   took before the genome sequence was in hand  
   TOMORROW
An ambitious new initiative, The Cancer Genome Atlas aims to identify
  all the genetic abnormalities seen in 50 major types of cancer.
Based on a deeper understanding of disease at the genomic level, we will
  see a whole new generation of targeted interventions, many of which
  will be drugs that are much more effective and cause fewer side
  effects than those available today.
Thank
 you

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Human Genome Project

  • 1. Human Genome Presented by Peyman Ghoraishizadeh Department of Obstetric &Gynecology University Of Putra Malaysia
  • 2. What is a Genome and Gene?  A genome is an organism’s complete set of DNA, including all of its genes  Each genome contains all of the information needed to build and maintain that organism  A gene produce a protein
  • 3. The Physical Structure of the Human Genome  Nuclear DNA  The nucleus contains long strands of DNA that encode genetic information  double helix  DNA contains base, sugar and phosphate group  Two strand are connected to each other by chemical pairing of each base  suitable molecule for carrying our genetic information
  • 4. Organelle DNA  Not all genetic information is found in nuclear DNA  Each mitochondrion has its own set of genes  Cells often have multiple mitochondria  Responsible for energy conversion  The energy-conversion process that takes place in the mitochondria takes place aerobically  There are many diseases caused by mutations in mitochondrial DNA (mtDNA) like deafness
  • 5. Ribonucleic Acids  ribonucleic acid (RNA) is a chain, or polymer, of nucleotides with the same 5' to 3' direction of its strands  RNA has a 2' oxygen atom that is not present in DNA  uracil takes the place of the thymine nucleotide found in DNA
  • 6. Structural Genes  Sequences that code for proteins  Regulatory Sequences  makes up a numerically insignificant fraction of the genome but provides critical functions  certain sequences indicate the beginning and end of genes, sites for initiating replication and recombination  regulatory sequences are inherited  Junk DNA  sequences are components of an organism's DNA that do not encode protein sequences  over 98% of the human genome is noncoding DNA ,[1]
  • 7. Other DNA Regions  Forty to forty-five percent of our genome is made up of short sequences that are repeated, sometimes hundreds of times  There are numerous forms of "repetitive DNA“  They have some functions such as stabilizing the chromosome structure or inactivating one of the two X chromosomes in developing females, a process called X-inactivation  The most highly repeated sequences found so far in mammals are called "satellite DNA"  These sequences are associated with chromosome structure and are found at the centromeres (or centers) and telomeres (ends) of chromosomes  they do not play a role in the coding of proteins, they do play a significant role in chromosome structure, duplication, and cell division
  • 8. Haplotype  is a combination of alleles (DNA sequences) at adjacent locations (loci) on a chromosome that are transmitted together  A haplotype may be one locus, several loci, or an entire chromosome depending on the number of recombination events that have occurred between a given set of loci  A second meaning of the term haplotype is a set of single-nucleotide polymorphisms (SNPs) on a single chromosome of a chromosome pair that are associated statistically  It is thought that these associations, and the identification of a few alleles of a haplotype sequence, can unambiguously identify all other polymorphic sites in its region. Such information is very valuable for investigating the genetics of common diseases, and has been investigated for the human species by the International HapMap Project .
  • 9. What was Human Genome Project  The Human Genome Project was an international research effort to determine the sequence of the human genome and identify the genes that it contains.  The Project was coordinated by the National Institutes of Health and the U.S. Department of Energy. Additional contributors included universities across the United States and international partners in the United Kingdom, France, Germany, Japan, and China
  • 10. The Human Genome Project formally began in 1990 and was completed in 2003,2 years ahead of its original schedule  The work of the Human Genome Project has allowed researchers to begin to understand the blueprint for building a person  researchers learn more about the functions of genes and proteins  this knowledge will have a major impact in the fields of medicine, biotechnology, and the life sciences
  • 11. What were the goals of the Human Genome Project  Project goals were to   Identify all the approximately 20,000-25,000 genes in human DNA,  Determine the sequences of the 3 billion chemical base pairs that make up human  DNA,  Store this information in databases,  Improve tools for data analysis,  Transfer related technologies to the private sector, and  Address the ethical, legal, and social issues (ELSI) that may arise from the project.  The Project also  aimed to sequence the genomes of several other organisms that are  important to medical research, such as the mouse and the fruit fly.
  • 12. What is DNA sequencing  Sequencing means determining  the exact order of the base pairs  in a segment of DNA  method used by the HGP to  produce the finished version of  the human genetic code is map- based, or BAC-based, sequencing   More recently scientists  estimated that there are less than 30,000 human genes. However,  we still have to make guesses at  the actual number of genes,  because not all of the human  genome sequence is annotated 
  • 13. Omic Projects  International HapMap Project      that aims to develop  a haplotype map (HapMap) of  the human genome, which will  describe the common patterns of  human genetic variation  HapMap is a key resource for  researchers to find genetic variants  affecting health, disease and  responses to drugs and  environmental factors 
  • 14. Encode DNA   Encyclopedia of DNA Elements (ENCODE )  The goal is to find all functional elements in the human genome   On 5 September 2012, initial results of the project were released  These publications combine to show that approximately 20%  of noncoding DNA in the human genome is functional while an  additional 60% is transcribed with no known function.  These results demonstrate that gene regulation is far more complex  than previously believed.   
  • 15. Human Genome Project  YESTERDAY  Just a half-century ago, very little was known about the  genetic factors that contribute  to human disease  The Human Genome project spurred a revolution in biotechnology innovation around  the world In April 2003, researchers successfully completed the Human Genome Project   TODAY  The Human Genome Project has already fueled the discovery of more than 1,800  disease genes  As a result of the Human Genome Project, today’s researchers can find a gene  suspected of causing an inherited disease in a matter of days, rather than the years it  took before the genome sequence was in hand  
  • 16. TOMORROW An ambitious new initiative, The Cancer Genome Atlas aims to identify all the genetic abnormalities seen in 50 major types of cancer. Based on a deeper understanding of disease at the genomic level, we will see a whole new generation of targeted interventions, many of which will be drugs that are much more effective and cause fewer side effects than those available today.