Enzyme kinetics is the study of how fast enzyme-catalyzed reactions occur. The Michaelis-Menten equation describes the relationship between substrate concentration and reaction rate. It defines terms like Vmax, the maximum reaction rate when the enzyme is saturated with substrate, and Km, the substrate concentration needed to reach half Vmax. Factors like temperature, pH, and enzyme/substrate concentrations can impact kinetic parameters and reaction rates.
this will be useful to understand about the new topics such as abzymes, ribozymes and also isoenzymes. You have to clear that ribozymes are not protein. because all enzymes are proteins but all proteins are not enzymes except ribozymes
this will be useful to understand about the new topics such as abzymes, ribozymes and also isoenzymes. You have to clear that ribozymes are not protein. because all enzymes are proteins but all proteins are not enzymes except ribozymes
This presentation deals with basics of enzyme kinetics and introduction to various plots which aid in understanding the mechanism of inhibition of enzymes.
Some of the enzyme possess additional sites, known as allosteric sites besides the active site . Such as know as allosteric enzyme. The allosteric sites are unique place on the enzyme molecules allosteric enzyme have one or more allosteric site.
HISTRY
The term allosteric has been introduced by the two Noble Laureates JACOB AND MONOD to denote an enzyme site different from the active site which non competitively bands molecule other than the substrate and may influence the enzyme activity.
Properties of allosteric enzyme
Effector may be positive or negative, this effector regulate the enzyme activity . The enzyme activity is increased when a positive allosteric effector binds at the allosteric site known as activator site. On the other hand negative allosteric effector bind at the allosteric site called inhibitor site and inhibit the enzyme activity
Dna supercoiling and role of topoisomerasesYashwanth B S
supercoiling is one of the important process to condenses the huge amount of DNA to fit inside the histone and its also plays a role during the replication ,transcription etc..,these activities is carried out by an enzyme called topoisomerases.
Signal transduction Calcium Signaling vibhakhanna1
A wide range of Ca2+ signaling pathways deliver the spatial and temporal Ca2+ signals necessary to control the specific functions of different cell types, via various effector proteins and protein kinases
Structure and function of Messenger RNA (mRNA )ICHHA PURAK
This presentation of 42 slides delivers information about structure,function synthesis , life span of both prokaryotic and eukaryotic messenger RNA also about role in protein sorting and targetting
This presentation is about the kinetics of enzyme action , the Michaelis- Menten Model and kinetics of allosteric enzyme action in a simplified language.
This presentation deals with basics of enzyme kinetics and introduction to various plots which aid in understanding the mechanism of inhibition of enzymes.
Some of the enzyme possess additional sites, known as allosteric sites besides the active site . Such as know as allosteric enzyme. The allosteric sites are unique place on the enzyme molecules allosteric enzyme have one or more allosteric site.
HISTRY
The term allosteric has been introduced by the two Noble Laureates JACOB AND MONOD to denote an enzyme site different from the active site which non competitively bands molecule other than the substrate and may influence the enzyme activity.
Properties of allosteric enzyme
Effector may be positive or negative, this effector regulate the enzyme activity . The enzyme activity is increased when a positive allosteric effector binds at the allosteric site known as activator site. On the other hand negative allosteric effector bind at the allosteric site called inhibitor site and inhibit the enzyme activity
Dna supercoiling and role of topoisomerasesYashwanth B S
supercoiling is one of the important process to condenses the huge amount of DNA to fit inside the histone and its also plays a role during the replication ,transcription etc..,these activities is carried out by an enzyme called topoisomerases.
Signal transduction Calcium Signaling vibhakhanna1
A wide range of Ca2+ signaling pathways deliver the spatial and temporal Ca2+ signals necessary to control the specific functions of different cell types, via various effector proteins and protein kinases
Structure and function of Messenger RNA (mRNA )ICHHA PURAK
This presentation of 42 slides delivers information about structure,function synthesis , life span of both prokaryotic and eukaryotic messenger RNA also about role in protein sorting and targetting
This presentation is about the kinetics of enzyme action , the Michaelis- Menten Model and kinetics of allosteric enzyme action in a simplified language.
What is enzyme?
How enzyme catalyze the reaction
Enzyme kinetics
History
Enzyme kinetic equation
Michaelis-menten equation
Michaelis-menten curve
Michaelis-menten equation derivation
Reversible inhibition
Two substrate reaction
Conclusion
References
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
2. • Chemical kinetics is the branch of chemistry
which addresses "how fast do reactions go?"
• Enzymes are the catalysts of biological systems
and are extremely efficient and specific as
catalysts.
• An enzyme accelerates the rate of a reaction
• Enzymes are highly specific.
CHEMICAL KINETICS
3. • A chemical mechanism is the chemical pathway
of conversion of S → P, including the structures
of any intermediates
4. • What we want to be able to determine
– Maximum velocity
– Substrate affinity
– Inhibitor affinity
• What it can tell us
– Flow through metabolic pathways
– Utilization of substrates
• What can we do with the information
– Control and manipulate metabolic events
5. STUDY OF ENZYME KINETICS IS USEFUL FOR MEASURING
– Concentration of an enzyme in a mixture
– Its purity
– Its specificity for different substrates
– Comparison of different forms of the same enzyme
– Effects of inhibitors
- Mechanism, structure of active site
6. ENZYME KINETICS
• The study of rate of the reaction and how it
changes in response to change in experimental
parameters
• These studies include measuring rates of the
enzyme-catalyzed reactions
[S]
Vmax/2
Km
v = Vmax = kcat [E]o
7. • In 1913 Michaelis-Menten derive an equation
which gives the relationship between the [S] &
velocity of the reaction.
• E is the enzyme, S is the "substrate" ES is an
enzyme-substrate complex.
Leonor Michaelis
(1875-1940)
Maud L. Menten
(1879-1960)
MICHAELIS-MENTEN
8. • E+S ES
K1
K-1
ES E+P
K2
K-2
Equation 1
Vo = K2 [ES] Equation 2
• ES is not easily measured thus the term [Et] is
introduced which is the sum of Free enzyme +
substrate bound enzyme
[Et] = [E] + [ES]
[E] = [Et] – [ES]
9. Rate of ES formation = K1([Et]-[ES]) [S] Equation 3
Rate of ES breakdown = K-1([ES]+K2[ES]) Equation 4
K1 ([Et]) – [ES])[S] = K-1 [ES] + K2 [ES] Equation 5
K1 [Et][S] - K1 [ES] [S] = (K-1 + K2) [ES] Equation 6
Step 1 : The rate of formation and break down of ES are
determined by the steps governed by the rate constant
Step 2 : An assumption is made that the initial rate of the
reaction reflects a steady state
10. K1 [Et] [S] = (K1 [S] + K-1 + K2) [ES] Equation 7
[ES] = K1 [Et] [S] Equation 8
K1 [S] + K-1 + K2
[ES] = [Et] [S]
Equation 9
[S] + (K2 + K-1) / K1
Adding the term K1 [ES][S] to both sides of the equation
Solving for ES
Dividing by K1
11. The term (K2 + K-1) / K1 is defined as Km
i.e., [ES] = [Et] [S]
Km + [S]
Equation 10
Vo can be express in terms of [ES]
Vo = K2 [ES]
Vo = K2 [Et] [S] Equation 11
Km + [S]
Vo = Vmax [S]
Km + [S]
Maximum velocity occur when the enzyme is saturated
[ES] = [Et]. Vmax = K2[Et]
12. RECIPROCAL OF MICHEAL MENTEN’S EQUATION
Vo is exactly half of the Vmax
Vmax/2 = Vmax [S] / Km + [S]
On dividing by Vmax
½ = [S] / Km + [S]
Solving for Km, we get Km + [S] = 2 [S]
Km = [S]
13. LINEWEAVER BURK RECIPROCAL PLOT
• It is difficult to determine the limitting value of V
(i.e., Vmax) directly from a plot of V against [S]
• Reciprocal of the MM equation give a straight line
plot
1/V0 = Km + [S]
Vmax [S]
1/Vo = Km + [S]
Vmax [S] Vmax [S]
1/Vo = Km + 1
Vmax [s] Vmax
14. •1/Vo is ploted against 1/[S] a straight line is obtained.
• Slope - Km/Vmax
•An intercept 1/ Vmax on the 1/ Vo axis
•-1/Km on the 1/[S] axis
15. HALDANE AND BRIGGS EQUATION
• In 1925 Briggs and Haldane, came up with a
more generally applicable assumption.
• They assumed that the concentration of ES
does not change with time. This is the Steady
State Assumption (Briggs and Haldane).
[E] + [S] [ES] [P] + [E]
k2
k-1
k1
16. EFFECT OF ENZYME CONCENTRATION
• As the enzyme concentration increases the rate
of enzyme activity increases up to a level where
it becomes constant.
• More the enzymes are available, the more
substrates are broken in less time.
17. •Then becomes constant as the substrate acts as a
limiting factor, which means that there are not
enough substrates to be broken down compared to
the number of enzymes.
18. EFFECT OF PH
• If the pH is too acidic or too basic for an enzyme,
its hydrogen bonds begin to break, causing its
active site to change its shape.
• An altered active site can’t bind with its
substrate so enzyme activity decreases.
19. • If the pH is too unfavorable then covalent bonds
can break, causing the enzyme to denature.
20. EFFECT OF TEMPERATURE
• The temperature increases there is more
movement of molecules and therefore more
collisions between enzymes and substrates – so
the enzyme activity increases.
• There is a limit to which enzyme activity can
increase because at a certain temperature an
enzyme will denature
21. EFFECT OF SUBSTRATE CONCENTARTION
• [S] changes due to the conversion of substrate
to product.
• Measure the initial rate of the reaction
designated V0 ( Initial velocity), when [S] is
much greater than the concentration of enzyme
22. SIGNIFICANCE OF Km AND Vmax
• The Km values of enzymes range widely. Km
values lies between 10-1 & 10-7 M
• The Km value of an enzyme depends on the
particular substrate & also environmental
conditions such as pH, temperature & ionic
strength
• Km is the concentration of substrate at which
half the active sites are occupied
• At lower Km affinity of enzyme is more and at
higher Km affinity of enzyme is low
23. • Km is related to the rate constants of
individual steps in the catalytic scheme
• If K-1 is greater than K2 i.e., dissociation of ES
complex is more rapid than the formation of E
& P then
Km = K-1 / K1
• The dissociation constant of ES complex is
given by
KES = [E] [S] = K-1
[ES] K1
E+S K1 ES K2 E+P
K-1
24. • In some cases the ES complex doesn't breakdown
directly to form free enzyme and product but
they for EP complex. Hence these is an rate
limiting step
Vmax = K3 [Et]
• Turn over number (Kcat) is defined as the number
of substrate converted to product by single
enzyme in a unit of time when enzyme is fully
saturated with substrate.
Vmax = Kcat [Et]
Vo = Vmax [S] / Km + [S]
Vo = Kcat [Et] / Km = [S]
E+S K1 ES K2 EP E+P
K-1 K-2