The document provides an overview of cell signaling and signal transduction. It discusses how cells communicate with each other via signaling molecules, both over short and long ranges. The key modes of cell signaling are introduced as autocrine, paracrine, endocrine, and juxtacrine signaling. The document then examines the processes of signal transduction, how signals are transmitted across and within cells to elicit responses. Specific topics covered include the synthesis and release of signaling molecules, signal detection by receptors, and the cellular changes induced by receptor-signal complexes.
In biology, cell signaling is part of any communication process that governs basic activities of cells and coordinates multiple-cell actions. The ability of cells to perceive and correctly respond to their microenvironment is the basis of development, tissue repair, and immunity, as well as normal tissue homeostasis.
Transcription in eukaryotes: A brief view
Transcription is the process by which single stranded RNA is synthesized by double stranded DNA. Transcription in eukaryotes and prokaryotes has many similarities while at the same time both showing their individual characteristics due to the differences in organization. RNA Polymerase (RNAP or RNA Pol) is different in prokaryotes and eukaryotes. Coupled transcription is seen in prokaryotes but not in Eukaryotes. In eukaryotes the pre-RNA should be spliced first to be translated.
In Eukaryotic transcription, synthesis of RNA occurs in the 3’→5’ direction. The 3’ end is more reactive due to the hydroxide group. 5’ end containing phosphate groups meanwhile, is not very reactive when it comes to adding new nucleotides. In Eukaryotes, the whole genome is not transcribed at once. Only a part of the genome is transcribed which also acts as the first, principle stage of genetic regulation.
Eukaryotes have five nuclear polymerases:
• RNA Polymerase I: This produces rRNA (23S, 5.8S, and 18S) which are the major components in a ribosome. This also produces pre-rRNA in yeasts.
• RNA Polymerase II: Helps in the production of mRNA (messenger RNA), snRNA (small, nuclear RNA), miRNA. This is the most studied type and requires several transcription factors for its binding
• RNA Polymerase III: This synthesizes tRNA (transfer RNA), 5S rRNA and other small RNAs required in the cytosol and nucleus.
• RNA Polymerase IV: Synthesizes siRNA (small interfering RNA) in plants.
• RNA Polymerase V: This is the least studied polymerase and synthesizes siRNA-directed heterochromatin in plants.
Eukaryotic transcription can be broadly divided into 4 stages:
• Pre-Initiation
• Initiation
• Elongation
• Termination
Transcription is an elaborate process which cells use to copy the genetic information stored in DNA into RNA. This pre-RNA is modified into mRNA before being transcribed to proteins. Transcription is the first step to utilizing the genetic information in a cell. Both Eukaryotes and Prokaryotes employ this process with the basic phases remaining the same. However eukaryotic transcription is more complex indicating the changes transcription has undergone towards perfection during evolution.
In biology, cell signaling is part of any communication process that governs basic activities of cells and coordinates multiple-cell actions. The ability of cells to perceive and correctly respond to their microenvironment is the basis of development, tissue repair, and immunity, as well as normal tissue homeostasis.
Transcription in eukaryotes: A brief view
Transcription is the process by which single stranded RNA is synthesized by double stranded DNA. Transcription in eukaryotes and prokaryotes has many similarities while at the same time both showing their individual characteristics due to the differences in organization. RNA Polymerase (RNAP or RNA Pol) is different in prokaryotes and eukaryotes. Coupled transcription is seen in prokaryotes but not in Eukaryotes. In eukaryotes the pre-RNA should be spliced first to be translated.
In Eukaryotic transcription, synthesis of RNA occurs in the 3’→5’ direction. The 3’ end is more reactive due to the hydroxide group. 5’ end containing phosphate groups meanwhile, is not very reactive when it comes to adding new nucleotides. In Eukaryotes, the whole genome is not transcribed at once. Only a part of the genome is transcribed which also acts as the first, principle stage of genetic regulation.
Eukaryotes have five nuclear polymerases:
• RNA Polymerase I: This produces rRNA (23S, 5.8S, and 18S) which are the major components in a ribosome. This also produces pre-rRNA in yeasts.
• RNA Polymerase II: Helps in the production of mRNA (messenger RNA), snRNA (small, nuclear RNA), miRNA. This is the most studied type and requires several transcription factors for its binding
• RNA Polymerase III: This synthesizes tRNA (transfer RNA), 5S rRNA and other small RNAs required in the cytosol and nucleus.
• RNA Polymerase IV: Synthesizes siRNA (small interfering RNA) in plants.
• RNA Polymerase V: This is the least studied polymerase and synthesizes siRNA-directed heterochromatin in plants.
Eukaryotic transcription can be broadly divided into 4 stages:
• Pre-Initiation
• Initiation
• Elongation
• Termination
Transcription is an elaborate process which cells use to copy the genetic information stored in DNA into RNA. This pre-RNA is modified into mRNA before being transcribed to proteins. Transcription is the first step to utilizing the genetic information in a cell. Both Eukaryotes and Prokaryotes employ this process with the basic phases remaining the same. However eukaryotic transcription is more complex indicating the changes transcription has undergone towards perfection during evolution.
regulation of gene expression in eukaryotes is a complex mechanism involved many factors. out of many levels of regulations, chromosomal and transcription level of regulation are discussed in this slides.
Cell Signaling is a phenomenon in which cells receive and respond to the signals or chemical messages from their internal environment or from the neighbouring cells.
The process of transcription is the first stage of gene expression resulting in the production of a primary RNA transcript from the DNA of a particular gene.
This step of gene expression which is followed by a number of post-transcriptional processes such as RNA splicing and translation.
These lead ultimately to the production of a functional protein and this process is highly regulated.
Both basal transcription and its regulation are dependent upon specific protein factors known as transcription factors.
These highly specific protein bind to the specific regulatory gene of DNA sequence and control the transcription process and regulate it.
For example- enzyme RNA polymerase catalyzes the chemical reaction that synthesize RNA, using the DNA gene as a template, the transcription factor control when, where, and how efficiency RNA polymerase function.
Play an important role in the normal development and routine of cellular function.
For MBBS, BDS and General Biochemistry students, coding strand, sense strand, anti-sense strand, promoter, enhancers, silencers, TATA box, Goldberg Hogness box, alternative spilicing, post-transcriptional modification
Assignment on Need of cell signaling, Steps in cell signaling, Intercellular signaling pathways, Types of intercellular signaling pathways, Intracellular signaling pathways, Receptors, Intercellular and intracellular signaling pathways. Classification of receptor family and molecular structure ligand gated ion channels; Gprotein coupled receptors, tyrosine kinase receptors and nuclear receptors.
regulation of gene expression in eukaryotes is a complex mechanism involved many factors. out of many levels of regulations, chromosomal and transcription level of regulation are discussed in this slides.
Cell Signaling is a phenomenon in which cells receive and respond to the signals or chemical messages from their internal environment or from the neighbouring cells.
The process of transcription is the first stage of gene expression resulting in the production of a primary RNA transcript from the DNA of a particular gene.
This step of gene expression which is followed by a number of post-transcriptional processes such as RNA splicing and translation.
These lead ultimately to the production of a functional protein and this process is highly regulated.
Both basal transcription and its regulation are dependent upon specific protein factors known as transcription factors.
These highly specific protein bind to the specific regulatory gene of DNA sequence and control the transcription process and regulate it.
For example- enzyme RNA polymerase catalyzes the chemical reaction that synthesize RNA, using the DNA gene as a template, the transcription factor control when, where, and how efficiency RNA polymerase function.
Play an important role in the normal development and routine of cellular function.
For MBBS, BDS and General Biochemistry students, coding strand, sense strand, anti-sense strand, promoter, enhancers, silencers, TATA box, Goldberg Hogness box, alternative spilicing, post-transcriptional modification
Assignment on Need of cell signaling, Steps in cell signaling, Intercellular signaling pathways, Types of intercellular signaling pathways, Intracellular signaling pathways, Receptors, Intercellular and intracellular signaling pathways. Classification of receptor family and molecular structure ligand gated ion channels; Gprotein coupled receptors, tyrosine kinase receptors and nuclear receptors.
The presentation aims to provide basics of bio signalling to the viewers. The various mechanisms of signalling in cells along with the details about G signalling are covered under this ppt.
This Presentation provides an outline knowledge about Cellular Communication, Steps involved, Its Types, Signal Transduction, Secondary Messenger , Receptors with some Interesting Facts and Current Trends. An assignment for the subject, Cellular and Molecular Pharmacology, 1st year M.Pharm, 1st semester.
Cell signaling is the process where cell communicate with each other with the help of signaling molecules and receptors. Cell signaling is done by different types of signaling processes such as autocrine, paracrine, synaptic, endocrine, contact dependent signaling
Nuclear magnetic resonance spectroscopy, most commonly known as NMR spectroscopy or magnetic resonance spectroscopy (MRS), is a spectroscopic technique to observe local magnetic fields around atomic nuclei.
Genomics is the study of an organism's entire genome, which is the complete set of genetic material present in its DNA. This includes all the genes, non-coding regions, and regulatory sequences. Genomics involves sequencing and analyzing the DNA to identify genes, variations (such as single nucleotide polymorphisms or SNPs), and other structural features of the genome.
How Genomics & Data analysis are intertwined each other (1).pdfNusrat Gulbarga
Genomics and data analysis are closely linked because genomics generates vast amounts of data, which requires sophisticated computational and analytical tools to process and interpret. Genomics involves sequencing, assembling, and annotating the genome, which produces large datasets that require bioinformatics and computational analysis. Data analysis techniques such as machine learning, statistical analysis, and data visualization are critical for interpreting genomic data, identifying patterns, and making meaningful conclusions. In turn, genomic data analysis helps to advance our understanding of genetics, biology, and disease, leading to new discoveries and advances in medicine, agriculture, and other fields. Without data analysis, genomic research would be limited in its ability to extract insights from the vast amounts of genomic data that are generated. Genomics and data analysis are intertwined because genomics generates vast amounts of data that require advanced computational and statistical methods to interpret and analyze. Genomics is the study of an organism's entire genetic makeup, including DNA sequences, gene expression patterns, and epigenetic modifications. With the advent of high-throughput sequencing technologies, genomics has generated an enormous amount of data that requires sophisticated computational tools to analyze and interpret.
Data analysis plays a crucial role in genomics because it helps to identify genetic variations and their functional significance, understand gene expression patterns, and predict the effects of genetic modifications. Sophisticated statistical methods and machine learning algorithms are used to analyze genomic data and identify patterns, associations, and correlations. Data analysis also plays a critical role in personalized medicine, where genomic data is used to identify individualized treatments for patients based on their genetic makeup. Overall, genomics and data analysis are intertwined because they complement each other and are both essential for understanding the complexities of the genetic code and its effects on health and disease. Genomics and data analysis are intertwined because genomics is the study of the entire genetic material of an organism, and data analysis is necessary to interpret and make sense of the vast amount of genomic data generated. Genomics involves sequencing, assembling, and analyzing DNA, RNA, and protein sequences. The resulting data are massive, complex, and require advanced computational tools and techniques to be analyzed effectively. Data analysis helps to identify genes, regulatory elements, and mutations that are responsible for specific traits or diseases. It also helps to compare genomic sequences across different species and populations. Without data analysis, it would be impossible to extract useful information from the vast amount of genomic data produced by sequencing technologies.
Newtons law of motion ~ II sem ~ m sc bioinformaticsNusrat Gulbarga
In the first law, an object will not change its motion unless a force acts on it. In the second law, the force on an object is equal to its mass times its acceleration. In the third law, when two objects interact, they apply forces to each other of equal magnitude and opposite direction.
Cheminformatics (sometimes referred to as chemical informatics or chemoinformatics) focuses on storing, indexing, searching, retrieving, and applying information about chemical compounds. ... Virtual libraries can contain information on likely synthesis methods and predicted stability of the reaction products.
Genomes, omics and its importance, general features III semesterNusrat Gulbarga
'Omic' technologies are primarily aimed at the universal detection of genes (genomics), mRNA (transcriptomics), proteins (proteomics) and metabolites (metabolomics) in a specific biological sample. ... Mass spectrometry is the most common method used for the detection of analytes in proteomic and metabolomic research.
Architecture of prokaryotic and eukaryotic cells and tissuesNusrat Gulbarga
The cells of all prokaryotes and eukaryotes possess two basic features: a plasma membrane, also called a cell membrane, and cytoplasm. However, the cells of prokaryotes are simpler than those of eukaryotes. For example, prokaryotic cells lack a nucleus, while eukaryotic cells have a nucleus
Proteomics is the large-scale study of proteins. Proteins are vital parts of living organisms, with many functions. The proteome is the entire set of proteins that is produced or modified by an organism or system. Proteomics has enabled the identification of ever increasing numbers of protein.
Cheese is a dairy product, derived from milk and produced in wide ranges of flavors, textures and forms by coagulation of the milk protein casein. It comprises proteins and fat from milk, usually the milk of cows, buffalo, goats, or sheep.
Generation in computer terminology is a change in technology a computer is/was being used.
Initially, the generation term was used to distinguish between varying hardware technologies.
Nowadays, generation includes both hardware and software, which together make up an entire
computer system
Cell biology is the study of cell structure and function, and it revolves around the concept that the cell is the fundamental unit of life. Focusing on the cell permits a detailed understanding of the tissues and organisms that cells compose.
In biology, a mutation is an alteration in the nucleotide sequence of the genome of an organism, virus, or extrachromosomal DNA. Viral genomes contain either DNA or RNA.
Necrosis is the death of body tissue. It occurs when too little blood flows to the tissue. This can be from injury, radiation, or chemicals. Necrosis cannot be reversed. When large areas of tissue die due to a lack of blood supply, the condition is called gangrene
Thermodynamics is the branch of physics that deals with the relationships between heat and other forms of energy. In particular, it describes how thermal energy is converted to and from other forms of energy and how it affects matter.
Translation is the process of translating the sequence of a messenger RNA (mRNA) molecule to a sequence of amino acids during protein synthesis. The genetic code describes the relationship between the sequence of base pairs in a gene and the corresponding amino acid sequence that it encodes.
Database administration refers to the whole set of activities performed by a database administrator to ensure that a database is always available as needed. Other closely related tasks and roles are database security, database monitoring and troubleshooting, and planning for future growth
These organs synthesize and secrete specific biochemical messengers, known as hormones, into the blood in a synchronized collaboration with the central nervous system (CNS) and the immune system to regulate metabolism, growth, development, and reproduction (Figure 15-1).
Apoptosis is an orderly process in which the cell's contents are packaged into small packets of membrane for “garbage collection” by immune cells. Apoptosis removes cells during development, eliminates potentially cancerous and virus-infected cells, and maintains balance in the body.
The cytoskeleton and cell motility from karp chapter 9Nusrat Gulbarga
In addition to playing this structural role, the cytoskeleton is responsible for cell movements. These include not only the movements of entire cells, but also the internal transport of organelles and other structures (such as mitotic chromosomes) through the cytoplasm.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Comparative structure of adrenal gland in vertebrates
Cell signaling
1. PRESENTED BYPRESENTED BY
V.Prem PrasadV.Prem Prasad
M.Pharmacy 1M.Pharmacy 1stst
Year(pharmacology)Year(pharmacology)
Gokaraju rangaraju college of pharmacyGokaraju rangaraju college of pharmacy 1
2. CONTENTS
IntroductionIntroduction
Modes of cell signalingModes of cell signaling
Communication between cellsCommunication between cells
Signal transductionSignal transduction
Ion channelsIon channels
2
3. INTRODUCTION:
Cells must be ready to respond to essential signals in their environment. TheseCells must be ready to respond to essential signals in their environment. These
are often chemicals in the extracellular fluid (ECF) from:are often chemicals in the extracellular fluid (ECF) from:
distant locations -distant locations - signaling by hormones;signaling by hormones;
nearby cellsnearby cells cytokines;cytokines;
oror
even secreted by themselves .even secreted by themselves .
Long-range allostery is often a significant component of cell signaling events.Long-range allostery is often a significant component of cell signaling events.
3
4. CELL SIGNALING
Cell signalingCell signaling is part of ais part of a complex systemcomplex system of communication that governs basicof communication that governs basic
cellular activities and coordinates cell actions.cellular activities and coordinates cell actions.
The ability of cells to perceive and correctly respond to their microenvironment is theThe ability of cells to perceive and correctly respond to their microenvironment is the
basis of development, tissue repair, and immunity as well as normal tissue homeostasisbasis of development, tissue repair, and immunity as well as normal tissue homeostasis
Errors in cellular information processing are responsible for diseases such as cancer,Errors in cellular information processing are responsible for diseases such as cancer,
autoimmunity, and diabetes. By understanding cell signaling, diseases may be treatedautoimmunity, and diabetes. By understanding cell signaling, diseases may be treated
effectively and, theoretically, artificial tissues may be created.effectively and, theoretically, artificial tissues may be created.
4
6. CELL SIGNALING & SIGNAL
TRANSDUCTTION
Why do cells communicateWhy do cells communicate
How are signals transmitted between cellsHow are signals transmitted between cells
How are signals transmitted across cell membranesHow are signals transmitted across cell membranes
into cell interiorinto cell interior
How are signals transmitted within a cellHow are signals transmitted within a cell
How do signals affect a cell functionHow do signals affect a cell function
6
9. SYNTHESIS OF SIGNALLINGSYNTHESIS OF SIGNALLING
MOLECULESMOLECULES
RELEASE OF SIGNALLING MOLECULESRELEASE OF SIGNALLING MOLECULES
TRANSPORT OF SIGNAL TO TARGETTRANSPORT OF SIGNAL TO TARGET
CELLSCELLS
DETECTION & BINDING OF SIGNAL BY SPECIFIC RECEPTORDETECTION & BINDING OF SIGNAL BY SPECIFIC RECEPTOR
CHANGES DUE TO RECEPTOR-SIGNAL COMPLEXCHANGES DUE TO RECEPTOR-SIGNAL COMPLEX
SIGNAL REMOVAL &SIGNAL REMOVAL &
RESPNOSE TERMINATIONRESPNOSE TERMINATION
STEPS IN CELL SIGNALING
9
10. CLASSIFICATION OF INTERCELLULARCLASSIFICATION OF INTERCELLULAR
COMMUNICATIONCOMMUNICATION
Intercellular signaling is subdivided into the following classifications:Intercellular signaling is subdivided into the following classifications:
AutocrineAutocrine signals target the cell itself. Sometimes autocrine cells can target cellssignals target the cell itself. Sometimes autocrine cells can target cells
close by if they are the same type of cell as the emitting cell. An example of this areclose by if they are the same type of cell as the emitting cell. An example of this are
immune cells.immune cells.
ParacrineParacrine signals target cells in the vicinity of the emitting cell. neurotransmitterssignals target cells in the vicinity of the emitting cell. neurotransmitters
represent an example.represent an example.
EndocrineEndocrine signals target distant cells. Endocrine cells produce hormones that travelsignals target distant cells. Endocrine cells produce hormones that travel
through the blood to reach all parts of the body.through the blood to reach all parts of the body.
JuxtacrineJuxtacrine signals target adjacent (touching) cells. These signals are transmittedsignals target adjacent (touching) cells. These signals are transmitted
along cell membranes via protein or lipid components integral to the membrane and arealong cell membranes via protein or lipid components integral to the membrane and are
capable of affecting either the emitting cell or cells immediately adjacent.capable of affecting either the emitting cell or cells immediately adjacent.
10
35. Only ion channels have an aqueous pore that crosses theOnly ion channels have an aqueous pore that crosses the
membranemembrane
Ion channels are not pumps
35
36. Channels are made up of subunits
Ion channels are made from 2-6 similar proteins or homologousIon channels are made from 2-6 similar proteins or homologous
structural units ‐ PORE-FORMING SUBUNITS - they associate creatingstructural units ‐ PORE-FORMING SUBUNITS - they associate creating
the functional ion channelthe functional ion channel
In addition, many channels contain the auxiliary regulatory subunitsIn addition, many channels contain the auxiliary regulatory subunits
36
37. Channels are made up of subunits
Pore-forming subunits contain anPore-forming subunits contain an αα‐helix made by ~20 hydrophobic‐helix made by ~20 hydrophobic
amino acids which interact with the annular phospholipids of the lipidamino acids which interact with the annular phospholipids of the lipid
bilayerbilayer
37
39. Ligand-gated channels
Typically, these are ion channels located on the postsynapticTypically, these are ion channels located on the postsynaptic
(receiving) side of the neuron(receiving) side of the neuron
Some act in response to a secreted (external) ligand- typically aSome act in response to a secreted (external) ligand- typically a
neurotransmitter such asneurotransmitter such as
• Acetylcholine (ACh)Acetylcholine (ACh)
• GABAGABA
• GlycineGlycine
• GlutamateGlutamate
Some act in response to internal ligands such as G-proteins,Some act in response to internal ligands such as G-proteins,
cGMP and cAMP, and are also regulated by internal metabolitescGMP and cAMP, and are also regulated by internal metabolites
such as phosphoinositides, arachidonic acid, calcium.such as phosphoinositides, arachidonic acid, calcium.
39
41. Modifiers of Channel Gating
(curare)(curare)
(ACh)(ACh)
(alpha-(alpha-
bungarotoxin)bungarotoxin)
Binding of exogenous ligandsBinding of exogenous ligands
can block gatingcan block gating
41
42. Modifiers of Channel Gating
Ion permeation can beIon permeation can be
prevented by pore blockers,prevented by pore blockers,
e.g. voltage-dependente.g. voltage-dependent
block of NMDARs by Mgblock of NMDARs by Mg2+2+
42
43. Modifiers of Channel Gating
Exogenous modulators can modify the action of endogenous ligandsExogenous modulators can modify the action of endogenous ligands
OpenOpen
ClosedClosed
OpenOpen
ClosedClosed
CurrentCurrent
TimeTime
43
44. Bu Z, Callaway DJ (2011). "Proteins MOVE! Protein dynamics and long-range allosteryBu Z, Callaway DJ (2011). "Proteins MOVE! Protein dynamics and long-range allostery
in cell signaling". in cell signaling". Advances in Protein Chemistry and Structural BiologyAdvances in Protein Chemistry and Structural Biology. Advances in. Advances in
Protein Chemistry and Structural Biology Protein Chemistry and Structural Biology 8383: 163–221. : 163–221.
Rang & Dale's PharmacologyRang & Dale's Pharmacology
http://en.wikipedia.org/wiki/Cell_signalinghttp://en.wikipedia.org/wiki/Cell_signaling
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www.authorstream.com/.../shona6685-645587-www.authorstream.com/.../shona6685-645587-pptppt--cellcell--signalingsignaling
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151254/http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151254/
Congreve M, Marshall F (March 2010). "The impact of GPCR structures onCongreve M, Marshall F (March 2010). "The impact of GPCR structures on
pharmacology and structure-based drug design". pharmacology and structure-based drug design". Br. J. Pharmacol.Br. J. Pharmacol. 159159 (5): 986– (5): 986–
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