This document discusses the structure and composition of bio-membranes. It states that bio-membranes are composed primarily of phospholipids that spontaneously form a bilayer structure. The phospholipids are amphipathic, with a hydrophobic tail and hydrophilic head. This allows the tails to interact at the membrane interior, separating the hydrophilic exterior into cytosolic and extracytosolic leaflets. Membranes also contain proteins and sterols that modulate membrane properties and functions. Integral membrane proteins span the bilayer, while peripheral proteins are attached to surfaces.
Active sites of the enzyme is that point where substrate molecule bind for the chemical reaction. It is generally found on the surface of enzyme and in some enzyme it is a “Pit” like structure
The active site is a three-dimensional cleft formed by groups that come from different parts of the amino acid sequence
The active site takes up a relatively small part of the total volume of an enzyme
Active sites are clefts or crevices
Substrates are bound to enzymes by multiple weak attractions.
The specificity of binding depends on the precisely defined arrangement of atoms in an active site.
Folding depends upon sequence of Amino Acids not the Composition. Folding starts with the secondary structure and ends at quaternary structure.
Denaturation occur at secondary, tertiary & quaternary level but not at primary level.
I have tried to make a precise presentation on protein transport, targeting and sorting into organelle's other than nucleus. Hope this might help you. Comments are welcome.
DNA Protein interaction occur when a protein binds a molecule of DNA, often to regulate the biological function of DNA, usually the expression of a gene. DNA Protein interactions play very vital roles in any living cell. It controls various cellular processes which are very essential for living beings, viz. replication, transcription, recombination, DNA repair etc. There are several types of proteins found in a cell.Direct recognition occurs when the amino acid side chains of a protein interact with specific DNA bases.
Most protein-DNA interactions are mediated by direct physical interaction (hydrogen bonding or hydrophobic interactions) between the protein and the DNA base pairs.
DNA-binding proteins can be identified by many experimental techniques such as chromatin immunoprecipitation on microarrays, X-ray crystallography and nuclear magnetic resonance (NMR).
Active sites of the enzyme is that point where substrate molecule bind for the chemical reaction. It is generally found on the surface of enzyme and in some enzyme it is a “Pit” like structure
The active site is a three-dimensional cleft formed by groups that come from different parts of the amino acid sequence
The active site takes up a relatively small part of the total volume of an enzyme
Active sites are clefts or crevices
Substrates are bound to enzymes by multiple weak attractions.
The specificity of binding depends on the precisely defined arrangement of atoms in an active site.
Folding depends upon sequence of Amino Acids not the Composition. Folding starts with the secondary structure and ends at quaternary structure.
Denaturation occur at secondary, tertiary & quaternary level but not at primary level.
I have tried to make a precise presentation on protein transport, targeting and sorting into organelle's other than nucleus. Hope this might help you. Comments are welcome.
DNA Protein interaction occur when a protein binds a molecule of DNA, often to regulate the biological function of DNA, usually the expression of a gene. DNA Protein interactions play very vital roles in any living cell. It controls various cellular processes which are very essential for living beings, viz. replication, transcription, recombination, DNA repair etc. There are several types of proteins found in a cell.Direct recognition occurs when the amino acid side chains of a protein interact with specific DNA bases.
Most protein-DNA interactions are mediated by direct physical interaction (hydrogen bonding or hydrophobic interactions) between the protein and the DNA base pairs.
DNA-binding proteins can be identified by many experimental techniques such as chromatin immunoprecipitation on microarrays, X-ray crystallography and nuclear magnetic resonance (NMR).
Ab Initio Protein Structure Prediction is a method to determine the tertiary structure of protein in the absence of experimentally solved structure of a similar/homologous protein. This method builds protein structure guided by energy function.
I had prepared this presentation for an internal project during my masters degree course.
Large family of proteolytic enzymes
All have serine residue at their active site which plays a crucial part in the enzymatic activity.
All cleave peptide bonds, by a similar mechanism of action. They differ in their specificity and regulation.
Serine proteases include:
the pancreatic proteases: trypsin, chymotrypsin and elastase,
various tissue/intracellular proteases such as leukocyte elastase
enzymes of the blood clotting cascade
some enzymes of complement system
Many serine proteases are synthesized as inactive precursors (zymogens) which are activated by proteolysis
Describes various aspects of Ramachandran plot. Different torsion angles are described with clear figures. How protein folding is affected by torsion angles is also explained.
RNA polymerase and transcription factorKAUSHAL SAHU
INTRODUCTION
WHAT IS TRANSCRIPTION ?
STEPS INVOLVE IN TRANSCRIPTION.
RNA POLYMERASES.
HISTORY OF RNA POLYMERASES.
STRUCTURE OF RNA POLYMERASES.
SUB UNITS OF RNA POLYMERASES.
TYPES OF RNA POLYMERASES.
FUNCTION OF RNA POLYMERASES.
TRANSCRIPTION FACTORS INVOLVE IN EUKARYOTIC TRANSCRIPTION.
CONCLUSION.
REFERENCES.
The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids. This presentation deals with what, why, how, where and who of PDB. In this presentation we have also included briefing about various file formats available in PDB with emphasis on PDB file format
This presentation contains the introduction to the structure of plasma membrane. This gives an insight into the biochemistry of the plasma membrane and the singer and nicholsan model.
Ab Initio Protein Structure Prediction is a method to determine the tertiary structure of protein in the absence of experimentally solved structure of a similar/homologous protein. This method builds protein structure guided by energy function.
I had prepared this presentation for an internal project during my masters degree course.
Large family of proteolytic enzymes
All have serine residue at their active site which plays a crucial part in the enzymatic activity.
All cleave peptide bonds, by a similar mechanism of action. They differ in their specificity and regulation.
Serine proteases include:
the pancreatic proteases: trypsin, chymotrypsin and elastase,
various tissue/intracellular proteases such as leukocyte elastase
enzymes of the blood clotting cascade
some enzymes of complement system
Many serine proteases are synthesized as inactive precursors (zymogens) which are activated by proteolysis
Describes various aspects of Ramachandran plot. Different torsion angles are described with clear figures. How protein folding is affected by torsion angles is also explained.
RNA polymerase and transcription factorKAUSHAL SAHU
INTRODUCTION
WHAT IS TRANSCRIPTION ?
STEPS INVOLVE IN TRANSCRIPTION.
RNA POLYMERASES.
HISTORY OF RNA POLYMERASES.
STRUCTURE OF RNA POLYMERASES.
SUB UNITS OF RNA POLYMERASES.
TYPES OF RNA POLYMERASES.
FUNCTION OF RNA POLYMERASES.
TRANSCRIPTION FACTORS INVOLVE IN EUKARYOTIC TRANSCRIPTION.
CONCLUSION.
REFERENCES.
The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids. This presentation deals with what, why, how, where and who of PDB. In this presentation we have also included briefing about various file formats available in PDB with emphasis on PDB file format
This presentation contains the introduction to the structure of plasma membrane. This gives an insight into the biochemistry of the plasma membrane and the singer and nicholsan model.
the cell membrane is one of the most important aspects of any human development. Yoga is also a great process for developing the human body. we try to connect various types of research during this project.
Structure and function of plasma membrane 2ICHHA PURAK
The presentation consists of 72 slides,describes following heads
DEFINITION : STRUCTURE OF PLASMA MEMBRANE
COMPONENTS OF PLASMA MEMBRANE ( (BIOCHEMICAL PROPERTIES)
LIPID BILAYER
PROTEINS
CARBOHYDRATES
CHOLESTEROL
MODELS EXPLAINING STRUCTURE OF BIO MEMBRANE
FLUID MOSAIC MODEL
MOBILITY OF MEMBRANE
GLYCOCALYX : GLYCOPROTEINS AND GLYCOLIPIDS
TRANSPORT OF IONS AND MOLECULES ACROSS PLASMA MEMBRANE
FUNCTIONS OF PLASMA MEMBRANE
DIVERSITY OF CELL MEMBRANES
SITE OF ATPASE ION CARRIER CHANNELS AND PUMPS-RECEPTORS
INTRODUCTION
plasma membrane is also known as cell membrane or cytoplasm membrane.
It is the biological membrane, separates interior of the cell from the outside environment.
Selective permeable to Ions and organic molecules.
Its basic function is to protect the cell from its surroundings.
It consists of the phospholipids bilayer with embedded proteins.
Cell membranes are involved in:cell adhesion, ion conductivity and cell signaling and serve as the attachment surface for several extracellular structures.
A Strategic Approach: GenAI in EducationPeter Windle
Artificial Intelligence (AI) technologies such as Generative AI, Image Generators and Large Language Models have had a dramatic impact on teaching, learning and assessment over the past 18 months. The most immediate threat AI posed was to Academic Integrity with Higher Education Institutes (HEIs) focusing their efforts on combating the use of GenAI in assessment. Guidelines were developed for staff and students, policies put in place too. Innovative educators have forged paths in the use of Generative AI for teaching, learning and assessments leading to pockets of transformation springing up across HEIs, often with little or no top-down guidance, support or direction.
This Gasta posits a strategic approach to integrating AI into HEIs to prepare staff, students and the curriculum for an evolving world and workplace. We will highlight the advantages of working with these technologies beyond the realm of teaching, learning and assessment by considering prompt engineering skills, industry impact, curriculum changes, and the need for staff upskilling. In contrast, not engaging strategically with Generative AI poses risks, including falling behind peers, missed opportunities and failing to ensure our graduates remain employable. The rapid evolution of AI technologies necessitates a proactive and strategic approach if we are to remain relevant.
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdfTechSoup
In this webinar you will learn how your organization can access TechSoup's wide variety of product discount and donation programs. From hardware to software, we'll give you a tour of the tools available to help your nonprofit with productivity, collaboration, financial management, donor tracking, security, and more.
Instructions for Submissions thorugh G- Classroom.pptxJheel Barad
This presentation provides a briefing on how to upload submissions and documents in Google Classroom. It was prepared as part of an orientation for new Sainik School in-service teacher trainees. As a training officer, my goal is to ensure that you are comfortable and proficient with this essential tool for managing assignments and fostering student engagement.
Palestine last event orientationfvgnh .pptxRaedMohamed3
An EFL lesson about the current events in Palestine. It is intended to be for intermediate students who wish to increase their listening skills through a short lesson in power point.
Honest Reviews of Tim Han LMA Course Program.pptxtimhan337
Personal development courses are widely available today, with each one promising life-changing outcomes. Tim Han’s Life Mastery Achievers (LMA) Course has drawn a lot of interest. In addition to offering my frank assessment of Success Insider’s LMA Course, this piece examines the course’s effects via a variety of Tim Han LMA course reviews and Success Insider comments.
Introduction to AI for Nonprofits with Tapp NetworkTechSoup
Dive into the world of AI! Experts Jon Hill and Tareq Monaur will guide you through AI's role in enhancing nonprofit websites and basic marketing strategies, making it easy to understand and apply.
Operation “Blue Star” is the only event in the history of Independent India where the state went into war with its own people. Even after about 40 years it is not clear if it was culmination of states anger over people of the region, a political game of power or start of dictatorial chapter in the democratic setup.
The people of Punjab felt alienated from main stream due to denial of their just demands during a long democratic struggle since independence. As it happen all over the word, it led to militant struggle with great loss of lives of military, police and civilian personnel. Killing of Indira Gandhi and massacre of innocent Sikhs in Delhi and other India cities was also associated with this movement.
2. Introduction-
Phospholipids Associate Non-covalently to
Form the Basic bi-layer Structure of Bio-
membranes.
Bio membranes are large flexible sheets that
serve as the boundaries of cells and their
intracellular organelles and form the outer
surfaces of some viruses.
Unlike the proteins, nucleic acids, and
polysaccharides, membranes are assembled
by the non-covalent association of their
component building block
3. The primary building blocks of all bio-membranes
are phospholipids, whose physical properties are
responsible for the formation of the sheet like
structure of membranes.
Phospholipids consist of two long-chain, non-polar
fatty acyl groups linked (usually by an ester bond)
to small, highly polar groups, including a
phosphate.
4.
5. In most phospholipids found in membranes, the
phosphate group is esterified to a hydroxyl group
on another hydrophilic compound.
In phosphatidylcholine, for example, choline is
attached to the phosphate.
The negative charge on the phosphate as well as
the charged or polar groups esterified to it can
interact strongly with water .
The phosphate and its associated esterified group,
the “head” group of a phospholipid, is hydrophilic,
whereas the fatty acyl chains, the “tails,” are
hydrophobic.
6. The amphipathic nature of phospholipids, which
governs their interactions, is critical to the
structure of bio-membranes.
When a suspension of phospholipids is
mechanically dispersed in aqueous solution, the
phospholipids aggregate into one of three forms:
spherical Micelles and Liposomes and sheetlike,
two-molecule-thick phospholipid bi-layers.
The type of structure formed by a pure
phospholipid or a mixture of phospholipids
depends on several factors, including the length of
the fatty acyl chains, their degree of saturation,
and temperature
7.
8. In all three structures, the hydrophobic effect
causes the fatty acyl chains to aggregate and
exclude water molecules from the “core.”
Under suitable conditions, phospholipids of the
composition present in cells spontaneously form
symmetric phospholipid bi-layers .
Each phospholipid layer in this lamellar structure
is called a leaflet .
9. The fatty acyl chains in each leaflet minimize
contact with water by aligning themselves tightly
together in the center of the bilayer, forming a
hydrophobic core that is about 3 nm thick .
The close packing of these nonpolar tails is
stabilized by the hydrophobic effect and van der
Waals interactions between them. Ionic and
hydrogen bonds stabilize the interaction of the
phospholipid polar head groups with one another
and with water.
10. Because of their hydrophobic core, bilayers are
virtually impermeable to salts, sugars, and most
other small hydrophilic molecules .
The phospholipid bilayer is the basic structural unit
of nearly all biological membranes; thus, although
they contain other molecules (e.g., cholesterol,
glycolipids, proteins), biomembranes have a
hydrophobic core that separates two aqueous
solutions and acts as a permeability barrier
11. First, the hydrophobic core is an impermeable
barrier that prevents the diffusion of water-soluble
(hydrophilic) solutes across the membrane.
Importantly, this simple barrier function is
modulated by the presence of membrane proteins
that mediate the transport of specific molecules
across this otherwise impermeable bilayer.
The second property of the bilayer is its stability.
The bilayer structure is maintained by hydrophobic
and van der Waals interactions between the lipid
chains. Even though the exterior aqueous
environment can vary widely in ionic strength and
pH, the bilayer has the strength to retain its
characteristic architecture
12. A typical biomembrane is assembled from –
1) phosphoglycerides
2)Sphingolipids
3)steroids
All three classes of lipids are amphipathic
molecules having a polar (hydrophilic) head group
and hydrophobic tail.
13. I. Phosphoglycerides, the most abundant class of
lipids in most membranes, are derivatives of
glycerol 3-phosphate.
A typical phosphoglyceride molecule consists of a
hydrophobic tail composed of two fatty acyl chains
esterified to the two hydroxyl groups in glycerol
phosphate and a polar head group attached to the
phosphate group.
The two fatty acyl chains may differ in the number
of carbons that they contain (commonly 16 or 18)
and their degree of saturation (0, 1, or 2 double
bonds). A phosphogyceride is classified according
to the nature of its head group.
Phosphatidylcholines, the most abundant
phospholipids in the plasma membrane.
14.
15. All of these compounds are derived from
sphingosine, an amino alcohol with a long
hydrocarbon chain, and contain a long-chain fatty
acid attached to the sphingosine amino group.
In sphingomyelin, the most abundant sphingolipid,
phosphocholine is attached to the terminal
hydroxyl group of sphingosine . Thus
sphingomyelin is a phospholipid, and its overall
structure is quite similar to that of
phosphatidylcholine.
16. Other sphingolipids are amphipathic glycolipids
whose polar head groups are sugars.
Glucosylcerebroside, the simplest
glycosphingolipid, contains a single glucose unit
attached to sphingosine. In the complex
glycosphingolipids called gangliosides, one or two
branched sugar chains containing sialic acid
groups are attached to sphingosine. Glycolipids
constitute 2– 10 percent of the total lipid in plasma
membranes; they are most abundant in nervous
tissue.
17.
18. The basic structure of steroids is a four-ring
hydrocarbon.
Cholesterol, the major steroidal constituent of
animal tissues, has a hydroxyl substituent on one
ring . Although cholesterol is almost entirely
hydrocarbon in composition, it is amphipathic
because its hydroxyl group can interact with water.
Cholesterol is especially abundant in the plasma
membranes of mammalian cells but is absent from
most prokaryotic cells.
As much as 30–50 percent of the lipids in plant
plasma membranes consist of certain steroids
19.
20. Membrane proteins are defined by their location
within or at the surface of a phospholipid bilayer.
Although every biological membrane has the
same basic bilayer structure, the proteins
associated with a particular membrane are
responsible for its distinctive activities .
The density and complement of proteins
associated with biomembranes vary, depending
on cell type and subcellular location. For
example, the inner mitochondrial membrane is
76 percent protein; the myelin membrane, only
18 percent.
Biomembranes: Protein Components and Basic Functions
21. The lipid bilayer presents a unique two-
dimensional hydrophobic environment for
membrane proteins.
Some proteins are buried within the lipid-rich
bilayer; other proteins are associated with the
exoplasmic or cytosolic leaflet of the bilayer.
Protein domains on the extracellular surface of
the plasma membrane generally bind to other
molecules, including external signaling proteins,
ions, and small metabolites (e.g., glucose, fatty
acids), and to adhesion molecules on other cells
or in the external environment
22. Domains within the plasma membrane, particularly
those that form channels and pores, move
molecules in and out of cells.
Domains lying along the cytosolic face of the
plasma membrane have a wide range of functions,
from anchoring cytoskeletal proteins to the
membrane to triggering intracellular signaling
pathways .
In many cases, the function of a membrane
protein and the topology of its polypeptide chain in
the membrane can be predicted on the basis of its
homology with another, well characterized protein
23.
24. Membrane proteins can be classified into three
categories
1) integral,
2)lipid-anchored,
3) peripheral
on the basis of the nature of the membrane–
protein interactions
25. Integral membrane proteins, also called
transmembrane proteins, span a phospholipid bilayer
and are built of three segments.
The cytosolic and exoplasmic domains have
hydrophilic exterior surfaces that interact with the
aqueous solutions on the cytosolic and exoplasmic
faces of the membrane.
These domains resemble other water-soluble proteins
in their amino acid composition and structure. In
contrast, the 3-nm-thick membrane-spanning domain
contains many hydrophobic amino acids whose side
chains protrude outward and interact with the
hydrocarbon core of the phospholipid bilayer
26.
27. In all transmembrane proteins examined to date,
the membrane-spanning domains consist of one
or more helices or of multiple strands. In addition,
most transmembrane proteins are glycosylated
with a complex branched sugar group attached to
one or several amino acid side chains.
Invariably these sugar chains are localized to the
exoplasmic domains.
28. Lipid-anchored membrane proteins are bound
covalently to one or more lipid molecules .
The hydrophobic carbon chain of the attached
lipid is embedded in one leaflet of the membrane
and anchors the protein to the membrane.
The polypeptide chain itself does not enter the
phospholipid bilayer
29.
30. Peripheral membrane proteins do not interact with
the hydrophobic core of the phospholipid bilayer.
Instead they are usually bound to the membrane
indirectly by interactions with integral membrane
proteins or directly by interactions with lipid head
groups. Peripheral proteins are localized to either
the cytosolic or the exoplasmic face of the plasma
membrane.
31. The most common type of IMP is
the transmembrane protein (TM), which
spans the entire biological
membrane. Single-pass membrane
proteins cross the membrane only once,
while multi-pass membrane proteins
weave in and out, crossing several times.
32. Single pass TM proteins can be categorized as Type I,
which are positioned such that their carboxyl-terminus
is towards the cytosol, or Type II, which have their
amino-terminus towards the cytosol.
Type III proteins have multiple transmembrane
domains in a single polypeptide, while type IV consists
of several different polypeptides assembled together in
a channel through the membrane.
Type V proteins are anchored to the lipid bilayer
through covalently linked lipids. Finally Type VI
proteins have both a transmembrane domains and lipid
anchors
33. Example of single pass membrane protein is
Glycophorin A
Example of multi pass membrane protein is
Bacteriorhodopsin.