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BIOLOGICAL
MOLECULES
Carbohydrates, fats , proteins and water

1
CARBOHYDRATES
 Carbohydrates

are a large group of organic compounds
occurring in foods and living tissues and including sugars,
starch, and cellulose.

 They

contain carbon, hydrogen and oxygen.

 hydrogen

and oxygen are in the same ratio as water (2:1) and
typically can be broken down to release energy in the animal
body.

 They
 It

have a general formula Cx(H2O)y.

is divided into 3 main groups: Monosaccharides,
Disaccharides and Polysaccharides.

2
 Monosaccharaides

are sugars which dissolve easily in water
to form a sweet solution.

 They

are single sugars (mono)

 They

have the formula (CH2O)n where n is an integer.

 The

are classified according to the number of carbon atoms
in each molecule. Example Triose has 3 carbon atoms.

 All

sugars end in -ose

MONOSACCHARIDE

3
Monosaccharides

can be
represented in straight form or
ring form.
Its role in living organisms is to:
provide

a source of energy in
respiration

Serve

as building blocks for larger
molecules (starch)

STRUCTURES AND FUNCTIONS

4
DISACCHARIDES

 These

are any of a class of
sugars whose molecules contain
two monosaccharide.

 When

two monosaccharides
bond they form a glycosidic
bond through a condensation
reaction.

 Hydrolysis

is the reverse of the
condensation reaction and
forms two monosaccharides
from one disaccharide.

5
POLYSACCHARIDES

It

is a carbohydrate whose
molecules consist of a number of
sugar molecules bonded together by
a glycosidic bond.

They

are not sugars because they
are insoluble.

In

animals polysaccharides are
glucose and in plants starch.

The

most common polysaccharide is
cellulose.

6
 Starch
 They

and glycogen are very similar.

are both made up of amylose and amylopectins.

 Amylose

is made of many alpha-glucose molecules bonded
together forming 1,4 linked glucose molecules, the chains
are curved and coil into a helical structure.

 Amylopectin

is also made up of 1,4 linked glucose
molecules but also has branches formed by1,6 linkages.

 The

difference between starch and glycogen is that
glycogen have more branches than that of starch.

STARCH AND GLYCOGEN

7
Cellulose
It

makes up the cell wall of a plant cell.

is a polymer of beta-glucose

In

order for a glycosidic bond to be formed in
beta-glucose must be rotated.

This

makes cellulose a strong molecule because of
its hydrogen bonds.

CELLULOSE

8
TESTING FOR THE PRESENCE OF
REDUCING SUGARS
 Benedict's

reagent (copper(II) sulphate) is used to test for the
presence of sugars. It has a blue colour and only reacts in alkaline
conditions.

 The

benedict's solution must be added in excess to the sample
being tested and heated in a water bath. A positive test will cause
the solution to turn from blue to green to yellow to orange and
finally brick-red.

 All

monosaccharides and disaccharides have this effect on
benedict's because they are reducing sugars.

9
TESTING FOR THE PRESENCE OF
NON-REDUCING SUGARS
 Some

disaccharides are non-reducing hence Benedict's will
have no effect on it.

 The

sample sugar must be heated with hydrochloric acid
(HCl) in order to break the glycosidic bonds.

 The

solution must then be neutralised with sodium
hydroxide before the benedict’s solution can be added and
heated.

 If

there is a sugar present the solution will change colour if
not there will be no colour change hence no sugar is
10
present.
TESTING FOR THE PRESENCE
OF STARCH
The

spiralled shape of starch molecules allows just
enough space for iodine molecules.

Therefore

iodine solution (potassium iodide
solution) can be used to test for the presence of
starch.

Iodine

solution is orange-brown in colour and when
added to a solution containing starch turns blue- 11
black.
Lipids

are a group of chemicals. The most common type
are the triglycerides, which are commonly known as fats
and oils.

Fats

are solids at room temperature whereas oils are
liquid. Also fats are found in animals whiles oils are
found in plants. Their solid and liquid states arise from
the saturated nature of fats and the unsaturated nature
of oils.

The

unit structures of fats are fatty acids and glycerol

LIPIDS
 Triglycerides

are made by the combinationof 3 fatty acid
molecules with one glycerol molecule. The longer the chain
of fatty acids, the more energy can be released during
oxidation. Double bonds in the fatty acids caus ea kink in
the chain which determines if it is is saturated on
unsaturated.

TRIGLYCERIDES
Each

molecule has the unusual property of one end
hydrophilic and one end hydrophobic ; this is
because the glycerol head has a phosphate group
embedded in to and the three fatty acids are
replaced by two instead

PHOSPHOLIPIDS
Amino

acids are the unit structures of proteins.
Linking these structures are peptide bonds .
During this linkage, water is lost by condensation
to form dipeptides and finally polypeptides.

THE AMINO ACID
Primary structure: it shows the sequence in which amino acids are joined.
Secondary structure: due to the effect polypeptide chains have each
other, the polypeptide chain usually coils into an alpha helix or beta
pleated sheet ( hydrogen bonds occur when –CO group of one amino acid
is attracted to the –NH group of the other amino acid 4 places ahead of
it)

Tertiary structure: the precise way in which the secondary structure is
coiled into a 3d figure is the tertiary structure
Quaternary Structure: the quaternary structure is made up of two or
more tertiary structures, it is the association of polypeptide chains

POLYPEPTIDE STRUCTURE
Denaturation occurs when the
WHAT HOLDS A PROTEIN bonds holding the shape of a protein
are broken. If the protein is soluble,
MOLECULE TOGETHER? the protein renders it insoluble.
Extreme pHs break ionic bonds by
altering the charges on the R groups
 Hydrogen Bonds :broken by high
Reducing agents break disulfide
temperatures or pH changes
bonds which can be seen in perming
 Disulphide Bonds : formed by two
hair.
cysteine molecules , bonds can be
Globular proteins are more
broken by reducing agents
susceptible to denaturation the
fibrous proteins, this could be
 Ionic Bonds: formed between amine
and carboxylic acid groups, bonds can because fibrous proteins have more
disulphide bonds holding them
be broken by pH changes.
together, it could also be because
 Hydrophobic interactions also occur
fibrous proteins are mostly found
between hydrophobic side chains
outside the cell where temperature
is not as easily controlled.
ADDITIONAL
INFORMATION

Gel

electrophoresis using size and using pH

Collagen

and Haemoglobin: haemoglobin is
made up of four polypeptide chains, two
identical alpha chains and 2 identical beta
chains; therefore in each haemoglobinn
molecule, four haem groups carry four oxygen
molecules.
 Water

is a dipole. Because hydrogen and
oxygen atoms are different in size and
electronegativity, the water molecule is
non-linear and polar.
polarity means that individual water
molecules can form hydrogen bonds with
other water molecules Although these
individual hydrogen bonds are weak,
collectively they make water a very
Hydroge
n atom
stable substance.

Hydroge
n atom

 This

WATER: THE LIFE MOLECULE

Oxygen
atom

Hydroge
n atom

Oxygen
atom

Hydroge
n atom
 Solvent

properties: the polarity of water makes it an excellent solvent. The
electrostatic attractions between polar water molecules and ions of a
solute are stronger than those between the cations and anions of the
solute.

 High

specific heat capacity: lots of energy needed to break hydrogen bonds.

 High

latent heat of vaporization: hydrogen bonds attract molecules of
liquid water to one another and make it difficult for the molecules to
escape as vapor.

 Molecular

mobility: the weakness of individual hydrogen bonds means the
individual water molecules mobile.

 Cohesion

and surface tension: hydrogen bonding causes water molecules to
stick together, and also stick onto other molecules causing cohesion. This
results in surface tension.

PHYSICAL PROPERTIES
IMPORTANCE OF WATER

 Solvent

properties allow water to act as a transport medium
for polar solutes: movements of minerals to lakes and seas,
transport via blood and lymph in multicellular animals, etc.

 Cohesion

between water molecules create the continuous
column of water in transpiration streams.

 Molecular

mobility allows water molecules to move easily
relative to one another-this allows osmosis to take place.

 Expansion

on freezing allows ice to float and insulates
organisms in the water below it.

 Water

can be used directly as a reagent in photosynthesis, to
hydrolyze macromolecules to their subunits in digestion and is
also the medium in which all biochemical reactions take
place.
IMPORTANCE CONTINUED

 Volatility

is balanced at the Earth’s temperatures so that a water
cycle of evaporation, transpiration and precipitation is
maintained.

 Water’s

cohesive and adhesive properties mean that it is viscous,
making it a useful lubricant in biological processes:


Synovial fluid: lubricates vertebrate joints



Pleural fluid: minimizes friction between lungs and thoracic cage during
breathing



Mucus: permits easy passage of feces down the colon and lubricates the
penis and vagina during sexual intercourse.

 The

high specific heat capacity of water means that bodies
composed largely of water are very thermostable and thus less
prone to heat damage by changes in environmental temperatures.

 The

high latent heat of vaporization of water means that body
can be considerably cooled with a minimal loss of water. This can
be seen in sweating, gaping in mammals and transpiring leaves.

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Biological Molecules ( I and a group of friends )

  • 2. CARBOHYDRATES  Carbohydrates are a large group of organic compounds occurring in foods and living tissues and including sugars, starch, and cellulose.  They contain carbon, hydrogen and oxygen.  hydrogen and oxygen are in the same ratio as water (2:1) and typically can be broken down to release energy in the animal body.  They  It have a general formula Cx(H2O)y. is divided into 3 main groups: Monosaccharides, Disaccharides and Polysaccharides. 2
  • 3.  Monosaccharaides are sugars which dissolve easily in water to form a sweet solution.  They are single sugars (mono)  They have the formula (CH2O)n where n is an integer.  The are classified according to the number of carbon atoms in each molecule. Example Triose has 3 carbon atoms.  All sugars end in -ose MONOSACCHARIDE 3
  • 4. Monosaccharides can be represented in straight form or ring form. Its role in living organisms is to: provide a source of energy in respiration Serve as building blocks for larger molecules (starch) STRUCTURES AND FUNCTIONS 4
  • 5. DISACCHARIDES  These are any of a class of sugars whose molecules contain two monosaccharide.  When two monosaccharides bond they form a glycosidic bond through a condensation reaction.  Hydrolysis is the reverse of the condensation reaction and forms two monosaccharides from one disaccharide. 5
  • 6. POLYSACCHARIDES It is a carbohydrate whose molecules consist of a number of sugar molecules bonded together by a glycosidic bond. They are not sugars because they are insoluble. In animals polysaccharides are glucose and in plants starch. The most common polysaccharide is cellulose. 6
  • 7.  Starch  They and glycogen are very similar. are both made up of amylose and amylopectins.  Amylose is made of many alpha-glucose molecules bonded together forming 1,4 linked glucose molecules, the chains are curved and coil into a helical structure.  Amylopectin is also made up of 1,4 linked glucose molecules but also has branches formed by1,6 linkages.  The difference between starch and glycogen is that glycogen have more branches than that of starch. STARCH AND GLYCOGEN 7
  • 8. Cellulose It makes up the cell wall of a plant cell. is a polymer of beta-glucose In order for a glycosidic bond to be formed in beta-glucose must be rotated. This makes cellulose a strong molecule because of its hydrogen bonds. CELLULOSE 8
  • 9. TESTING FOR THE PRESENCE OF REDUCING SUGARS  Benedict's reagent (copper(II) sulphate) is used to test for the presence of sugars. It has a blue colour and only reacts in alkaline conditions.  The benedict's solution must be added in excess to the sample being tested and heated in a water bath. A positive test will cause the solution to turn from blue to green to yellow to orange and finally brick-red.  All monosaccharides and disaccharides have this effect on benedict's because they are reducing sugars. 9
  • 10. TESTING FOR THE PRESENCE OF NON-REDUCING SUGARS  Some disaccharides are non-reducing hence Benedict's will have no effect on it.  The sample sugar must be heated with hydrochloric acid (HCl) in order to break the glycosidic bonds.  The solution must then be neutralised with sodium hydroxide before the benedict’s solution can be added and heated.  If there is a sugar present the solution will change colour if not there will be no colour change hence no sugar is 10 present.
  • 11. TESTING FOR THE PRESENCE OF STARCH The spiralled shape of starch molecules allows just enough space for iodine molecules. Therefore iodine solution (potassium iodide solution) can be used to test for the presence of starch. Iodine solution is orange-brown in colour and when added to a solution containing starch turns blue- 11 black.
  • 12. Lipids are a group of chemicals. The most common type are the triglycerides, which are commonly known as fats and oils. Fats are solids at room temperature whereas oils are liquid. Also fats are found in animals whiles oils are found in plants. Their solid and liquid states arise from the saturated nature of fats and the unsaturated nature of oils. The unit structures of fats are fatty acids and glycerol LIPIDS
  • 13.  Triglycerides are made by the combinationof 3 fatty acid molecules with one glycerol molecule. The longer the chain of fatty acids, the more energy can be released during oxidation. Double bonds in the fatty acids caus ea kink in the chain which determines if it is is saturated on unsaturated. TRIGLYCERIDES
  • 14. Each molecule has the unusual property of one end hydrophilic and one end hydrophobic ; this is because the glycerol head has a phosphate group embedded in to and the three fatty acids are replaced by two instead PHOSPHOLIPIDS
  • 15. Amino acids are the unit structures of proteins. Linking these structures are peptide bonds . During this linkage, water is lost by condensation to form dipeptides and finally polypeptides. THE AMINO ACID
  • 16. Primary structure: it shows the sequence in which amino acids are joined. Secondary structure: due to the effect polypeptide chains have each other, the polypeptide chain usually coils into an alpha helix or beta pleated sheet ( hydrogen bonds occur when –CO group of one amino acid is attracted to the –NH group of the other amino acid 4 places ahead of it) Tertiary structure: the precise way in which the secondary structure is coiled into a 3d figure is the tertiary structure Quaternary Structure: the quaternary structure is made up of two or more tertiary structures, it is the association of polypeptide chains POLYPEPTIDE STRUCTURE
  • 17. Denaturation occurs when the WHAT HOLDS A PROTEIN bonds holding the shape of a protein are broken. If the protein is soluble, MOLECULE TOGETHER? the protein renders it insoluble. Extreme pHs break ionic bonds by altering the charges on the R groups  Hydrogen Bonds :broken by high Reducing agents break disulfide temperatures or pH changes bonds which can be seen in perming  Disulphide Bonds : formed by two hair. cysteine molecules , bonds can be Globular proteins are more broken by reducing agents susceptible to denaturation the fibrous proteins, this could be  Ionic Bonds: formed between amine and carboxylic acid groups, bonds can because fibrous proteins have more disulphide bonds holding them be broken by pH changes. together, it could also be because  Hydrophobic interactions also occur fibrous proteins are mostly found between hydrophobic side chains outside the cell where temperature is not as easily controlled.
  • 18. ADDITIONAL INFORMATION Gel electrophoresis using size and using pH Collagen and Haemoglobin: haemoglobin is made up of four polypeptide chains, two identical alpha chains and 2 identical beta chains; therefore in each haemoglobinn molecule, four haem groups carry four oxygen molecules.
  • 19.  Water is a dipole. Because hydrogen and oxygen atoms are different in size and electronegativity, the water molecule is non-linear and polar. polarity means that individual water molecules can form hydrogen bonds with other water molecules Although these individual hydrogen bonds are weak, collectively they make water a very Hydroge n atom stable substance. Hydroge n atom  This WATER: THE LIFE MOLECULE Oxygen atom Hydroge n atom Oxygen atom Hydroge n atom
  • 20.  Solvent properties: the polarity of water makes it an excellent solvent. The electrostatic attractions between polar water molecules and ions of a solute are stronger than those between the cations and anions of the solute.  High specific heat capacity: lots of energy needed to break hydrogen bonds.  High latent heat of vaporization: hydrogen bonds attract molecules of liquid water to one another and make it difficult for the molecules to escape as vapor.  Molecular mobility: the weakness of individual hydrogen bonds means the individual water molecules mobile.  Cohesion and surface tension: hydrogen bonding causes water molecules to stick together, and also stick onto other molecules causing cohesion. This results in surface tension. PHYSICAL PROPERTIES
  • 21. IMPORTANCE OF WATER  Solvent properties allow water to act as a transport medium for polar solutes: movements of minerals to lakes and seas, transport via blood and lymph in multicellular animals, etc.  Cohesion between water molecules create the continuous column of water in transpiration streams.  Molecular mobility allows water molecules to move easily relative to one another-this allows osmosis to take place.  Expansion on freezing allows ice to float and insulates organisms in the water below it.  Water can be used directly as a reagent in photosynthesis, to hydrolyze macromolecules to their subunits in digestion and is also the medium in which all biochemical reactions take place.
  • 22. IMPORTANCE CONTINUED  Volatility is balanced at the Earth’s temperatures so that a water cycle of evaporation, transpiration and precipitation is maintained.  Water’s cohesive and adhesive properties mean that it is viscous, making it a useful lubricant in biological processes:  Synovial fluid: lubricates vertebrate joints  Pleural fluid: minimizes friction between lungs and thoracic cage during breathing  Mucus: permits easy passage of feces down the colon and lubricates the penis and vagina during sexual intercourse.  The high specific heat capacity of water means that bodies composed largely of water are very thermostable and thus less prone to heat damage by changes in environmental temperatures.  The high latent heat of vaporization of water means that body can be considerably cooled with a minimal loss of water. This can be seen in sweating, gaping in mammals and transpiring leaves.