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1 
SIDDAGANGA INSTITUTE OF TECHNOLOGY 
Department of Biotechnology 
B.E. Biotechnology 
Introduction to Bioinformatics 
Mr. Vivek Chandramohan 
Asst. Professor 
Department of Biotechnology 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
WHAT IS BIOINFORMATICS? 
Computer 
Science 
Statistics 
BIOINFORMATICS 
Molecular 
Biology 
Introduction to Bioinformatics 9/19/2014 
2 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
DEFINITIONS 
"Bioinformatics is the field of science in which biology, 
computer science, and information technology merge into 
a single discipline.” 
-The National Center for 
Biotechnology Information(2001) , NCBI 
Introduction to Bioinformatics 9/19/2014 
3 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
Introduction to Bioinformatics 9/19/2014 
YEAR DISCOVERY/INVENTION AND ITS SIGNIFICANCE 
1953 
Watson and Crick proposed the DOUBLE HELIX structure of the genetic 
material 
1965 
The first major bioinformatics project was undertaken by Margaret Dayhoff 
in1965, who developed a first protein sequence database called Atlas of 
Protein Sequence and Structure 
1970 
Brookhaven National Laboratory established the Protein Data Bank for 
archiving three-dimensional protein structures 
1970 
The first sequence alignment algorithm was developed by Needleman and 
Wunsch 
1974 
The first protein structure prediction algorithm was developed by Chou and 
Fasman 
1980 
GenBank and the development of fast database searching algorithms such as 
FASTA by William Pearson and BLAST by Stephen Altschul and coworkers. 
4 
TIME LINE 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
INTRODUCTION 
Analyze, Store and Collect Molecular Biological 
information from database 
Main perspective of the field is the discovery of new 
biological approaches 
Provides central, globally accessible databases that 
enable scientists to submit, search and analyze 
information 
Offers analysis software for data studies and 
comparisons 
Provides tools for modeling, visualizing, exploring and 
interpreting data 
Introduction to Bioinformatics 9/19/2014 
5 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
GOALS 
The ultimate goal of bioinformatics is to better understand 
a living cell and how it functions at the molecular level 
Analyzing raw molecular sequence and structural data, 
bioinformatics research can generate new insights and 
provide a “global” perspective of the cell. 
Introduction to Bioinformatics 9/19/2014 
6 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
WHY BIOINFORMATICS? 
Number of researches increasing every day 
Explosive growth in biological information 
Need for a huge database to store, manage and retrieve 
information 
Regular updating 
Available online to all 
Without these most of the medical and biological field 
would have been on standstill 
Introduction to Bioinformatics 9/19/2014 
7 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
WHY BIOINFORMATICS? 
Introduction to Bioinformatics 9/19/2014 
8 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
Introduction to Bioinformatics 9/19/2014 
9 
WHY BIOINFORMATICS? 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
FIELDS RELATED TO BIOINFORMATICS 
Systems biology 
Proteomics 
Genomics 
Pharmacogenomics 
Pharmacogenetics 
Cheminformatics 
 In silico ADME-Tox Prediction 
 Computational biology 
 Structural bioinformatics 
 Evolutionary relationships 
 Next generation Sequencing 
(NGS) 
Introduction to Bioinformatics 9/19/2014 
10 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
APPLICATIONS 
Introduction to Bioinformatics 9/19/2014 
11 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
Introduction to Bioinformatics 9/19/2014 
Top 3 Bioinformatics Companies by Revenue (2010-11) 
Name of the Companies Location 
Ocimum Biosolutions Hyderabad 
Strand Life Sciences Bangalore 
Geschickten Bangalore 
70 
60 
50 
40 
30 
20 
10 
0 
2010-11 2009-10 2008-09 
Biospectrum, Thursday, June 09, 2011 
http://biospectrumindia.ciol.com/content/BioServices/11106093.asp 
Ocimum Biosolutions 
Strand Life Sciences 
Geschickten 
Revenue in crore 
12 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
Introduction to Bioinformatics 9/19/2014 
13 
Thank You 
B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka

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Bioinformatics

  • 1. 1 SIDDAGANGA INSTITUTE OF TECHNOLOGY Department of Biotechnology B.E. Biotechnology Introduction to Bioinformatics Mr. Vivek Chandramohan Asst. Professor Department of Biotechnology B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 2. WHAT IS BIOINFORMATICS? Computer Science Statistics BIOINFORMATICS Molecular Biology Introduction to Bioinformatics 9/19/2014 2 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 3. DEFINITIONS "Bioinformatics is the field of science in which biology, computer science, and information technology merge into a single discipline.” -The National Center for Biotechnology Information(2001) , NCBI Introduction to Bioinformatics 9/19/2014 3 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 4. Introduction to Bioinformatics 9/19/2014 YEAR DISCOVERY/INVENTION AND ITS SIGNIFICANCE 1953 Watson and Crick proposed the DOUBLE HELIX structure of the genetic material 1965 The first major bioinformatics project was undertaken by Margaret Dayhoff in1965, who developed a first protein sequence database called Atlas of Protein Sequence and Structure 1970 Brookhaven National Laboratory established the Protein Data Bank for archiving three-dimensional protein structures 1970 The first sequence alignment algorithm was developed by Needleman and Wunsch 1974 The first protein structure prediction algorithm was developed by Chou and Fasman 1980 GenBank and the development of fast database searching algorithms such as FASTA by William Pearson and BLAST by Stephen Altschul and coworkers. 4 TIME LINE B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 5. INTRODUCTION Analyze, Store and Collect Molecular Biological information from database Main perspective of the field is the discovery of new biological approaches Provides central, globally accessible databases that enable scientists to submit, search and analyze information Offers analysis software for data studies and comparisons Provides tools for modeling, visualizing, exploring and interpreting data Introduction to Bioinformatics 9/19/2014 5 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 6. GOALS The ultimate goal of bioinformatics is to better understand a living cell and how it functions at the molecular level Analyzing raw molecular sequence and structural data, bioinformatics research can generate new insights and provide a “global” perspective of the cell. Introduction to Bioinformatics 9/19/2014 6 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 7. WHY BIOINFORMATICS? Number of researches increasing every day Explosive growth in biological information Need for a huge database to store, manage and retrieve information Regular updating Available online to all Without these most of the medical and biological field would have been on standstill Introduction to Bioinformatics 9/19/2014 7 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 8. WHY BIOINFORMATICS? Introduction to Bioinformatics 9/19/2014 8 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 9. Introduction to Bioinformatics 9/19/2014 9 WHY BIOINFORMATICS? B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 10. FIELDS RELATED TO BIOINFORMATICS Systems biology Proteomics Genomics Pharmacogenomics Pharmacogenetics Cheminformatics  In silico ADME-Tox Prediction  Computational biology  Structural bioinformatics  Evolutionary relationships  Next generation Sequencing (NGS) Introduction to Bioinformatics 9/19/2014 10 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 11. APPLICATIONS Introduction to Bioinformatics 9/19/2014 11 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 12. Introduction to Bioinformatics 9/19/2014 Top 3 Bioinformatics Companies by Revenue (2010-11) Name of the Companies Location Ocimum Biosolutions Hyderabad Strand Life Sciences Bangalore Geschickten Bangalore 70 60 50 40 30 20 10 0 2010-11 2009-10 2008-09 Biospectrum, Thursday, June 09, 2011 http://biospectrumindia.ciol.com/content/BioServices/11106093.asp Ocimum Biosolutions Strand Life Sciences Geschickten Revenue in crore 12 B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka
  • 13. Introduction to Bioinformatics 9/19/2014 13 Thank You B.E. Biotechnology, Department of Biotechnology, SIT, Tumkur, Karnataka