This document provides an overview of biological classification and taxonomy. It begins by defining key terms like biosphere, ecosystem, and biodiversity. It then outlines the major kingdoms of life - Archaebacteria, Eubacteria, Protista, Fungi, Plantae, and Animalia. For each kingdom, it describes the cell type, number of cells, nutrition, examples of organisms, and their roles in ecosystems. It also discusses the hierarchical levels of classification from domain to species. The document provides a comprehensive introduction to classifying and organizing life on Earth.
Taxonomy (or systematics) is basically concerned with the classification of organisms. Living organisms are placed in groups on the basis of similarities and differences at the organismic, cellular, and molecular levels.
contains detailed information about classification of life system
in particular three domains of classification sytem of living organism
into prokarya archea eukarya
an ordered slides of the different kingdom classification including the three domains of life and tree of life by Dr. tithi parija (asst professor) in biology from KIIT school of biotechnology
Taxonomy (or systematics) is basically concerned with the classification of organisms. Living organisms are placed in groups on the basis of similarities and differences at the organismic, cellular, and molecular levels.
contains detailed information about classification of life system
in particular three domains of classification sytem of living organism
into prokarya archea eukarya
an ordered slides of the different kingdom classification including the three domains of life and tree of life by Dr. tithi parija (asst professor) in biology from KIIT school of biotechnology
USING E-INFRASTRUCTURES FOR BIODIVERSITY CONSERVATION - Module 5Gianpaolo Coro
An e-Infrastructure is a distributed network of service nodes, residing on multiple sites and managed by one or more organizations. e-Infrastructures allow scientists residing at distant places to collaborate. They offer a multiplicity of facilities as-a-service, supporting data sharing and usage at different levels of abstraction, e.g. data transfer, data harmonization, data processing workflows etc. e-Infrastructures are gaining an important place in the field of biodiversity conservation. Their computational capabilities help scientists to reuse models, obtain results in shorter time and share these results with other colleagues. They are also used to access several and heterogeneous biodiversity catalogues.
In this course, the D4Science e-Infrastructure will be used to conduct experiments in the field of biodiversity conservation. D4Science hosts models and contributions by several international organizations involved in the biodiversity conservation field. The course will give students an overview of the models, the practices and the methods that large international organizations like FAO and UNESCO apply by means of D4Science. At the same time, the course will introduce students to the basic concepts under e-Infrastructures, Virtual Research Environments, data sharing and experiments reproducibility.
2. Biosphere
• While the earth is huge, life is found in a
very narrow layer, called the biosphere. If
the earth could be shrunk to the size of an
apple, the biosphere would be no thicker
than the apple's skin.
Mader: Biology 8th Ed.
3. Biosphere
• The biosphere, like the human body, is
made up of systems that interact and are
dependent on each other.
4. • Biosphere is part of the atmosphere,
hydrosphere, and lithosphere that contains living
organisms.
Mader: Biology 8th Ed.
5. • The biosphere’s systems are called
ECOSYSTEMS.
• All ecosystems must have a constant source of
energy (usually the sun) and cycles or systems to
reuse raw materials.
• Examples:
water, nitrogen and carbon cycles etc.
Mader: Biology 8th Ed.
8. Biodiversity
Biodiversity is the variety of life
on Earth and the essential
interdependence of all
living things.
Diversity = Variety
9. Biodiversity
• Biodiversity:
The total number of species (est. 15 million)
The variability of their genes, and
The ecosystems in which they live
• Extinction:
The death of the last member of a species
9
Estimates of 400 species/day lost worldwide
10. 3 components of biodiversity
1. Diversity of genes
Chihuahuas, beagles, and rottweilers are all dogs—but
they're not the same because their genes are different.
Chihuahua Beagle
Rottweilers
11. 3 components of biodiversity
2. Diversity of species
For example, monkeys, dragonflies, and meadow beauties
are all different species.
Saki Monkey Golden Skimmer Meadow Beauty
12. 3 components of biodiversity
3. Variety of Ecosystems
Prairies, Ponds, and tropical rain forests are all
ecosystems. Each one is different, with its own
set of species living in it.
Paines Prairie Florida Sand Pond
Hoh Rain Forest
13. The Challenge
• Biologists have identified and
named over 15 million species so
far.
• They estimate that about 100
million species have yet to be
identified.
14. Why Do We Classify Organisms?
• ____________
• is the branch of biology concerned with
identifying, naming, and classifying organisms.
• Systematics
– Broader science of classifying organisms based on
similarity, biogeography, etc.
– Systematic zoologists have three goals
• To discover all species of animals
• To reconstruct their evolutionary relationships
• To classify animals according to their
evolutionary relationships
15. Finding Order in Diversity
• 1. Why Classify?
– To study the diversity of life
– To organize and name organisms
• 2. Why give scientific names?
– Common names are misleading
jellyfish silverfish star fish
Go to None of these animals are fish!
Section:
16. Why Scientists Assign Scientific Names to Organisms
Some organisms have several common
This cat is names
commonly known
as:
•Florida panther
•Mountain lion Scientific name: Felis concolor
•Puma Scientific name means “coat of
•Cougar one color”
Go to
Section:
17. Origin of Scientific Names
• By the 18th century, scientists realized that
naming organisms with common names was
confusing.
• Scientists during this time agreed to use a
single name for each species.
• They used Latin and Greek languages for
scientific names.
18. Linnaeus: The Father of Modern Taxonomy
Carolus Linnaeus developed system of
classification –
binomial nomenclature
a. Two name naming system
b. Gave organisms 2 names
Carolus von Linnaeus
Genus (noun) and species (1707-1778)
(adjective) Swedish scientist who laid
the foundation for modern
taxonomy
Go to
Section:
19. Linnaeus: The Father of Modern Taxonomy
Carolus Linnaeus
Rules for naming organisms
1. Written is Latin (unchanging)
2. Genus capitalized, species
lowercase
3. Both names are italicized or Carolus
Linnaeus
underlined
EX: Homo sapiens: wise /
thinking man
Go to
Section:
21. Kingdoms and Domains
• In the 18th century, Linnaeus originally
proposed two kingdoms: Animalia and
Plantae.
• By the 1950s, scientists expanded the
kingdom system to include five
kingdoms.
22. The Five Kingdom System
Monera bacteria
Protista Amoeba, slime mold
mushrooms, yeasts, molds
Fungi
flowering plants, mosses, ferns,
Plantae cone-bearing plants
mammals, birds, insects, fishes,
Animalia
worms, sponges
23. The Six Kingdom System
• In recent years, biologists have
recognized that the Monera are
composed of two distinct groups.
• As a result, the kingdom Monera has
now been separated into two
kingdoms: Eubacteria and
Archaebacteria, resulting in a six-
kingdom system of classification.
24. Classification of Living Things
The three-domain system
Bacteria Archaea Eukarya
The six-kingdom system
Archae-
Eubacteria Protista Plantae Fungi Animalia
bacteria
25. The Three-Domain System
• Scientists can group modern organisms
by comparing ribosomal RNA to
determine how long they have been
evolving independently.
• This type of molecular analysis has
resulted in a new taxonomic category
—the domain.
26. The Three Domains
• The three domains, which are larger than
the kingdoms, are the following:
• Eukarya – protists, fungi, plants and
animals
• Bacteria – which corresponds to the
kingdom Eubacteria.
• Archaea – which corresponds to the
kingdom Archaebacteria.
27. Modern Classification
• Modern biologists group organisms into categories
representing lines of evolutionary descent.
• Species within a genus are more closely related to
each other than to species in another genus.
Genus: Felis Genus: Canis
28. Similarities in DNA and RNA
• Scientists use similarities and differences in
DNA to determine classification and
evolutionary relationships.
• They can sequence or “read” the
information coded in DNA to compare
organisms.
29. Hierarchical Ordering of Classification
Grizzly bear Black bear Giant Red fox Abert Coral Sea star
panda squirrel snake
KINGDOM Animalia
PHYLUM Chordata
CLASS Mammalia
As we move from
the kingdom level ORDER Carnivora
to the species level,
more and more FAMILY Ursidae
members are
removed. GENUS Ursus
Each level is more
specific. SPECIES Ursus arctos
Go to
Section:
30. Kingdom Archaebacteria
Cell Type Prokaryote
Number of Cells Unicellular
Nutrition Autotroph or Heterotroph
Location Extreme Environments Volcanoes,
Deep Sea Vents, Yellowstone Hot
Springs
Examples Methanogens
Thermophiles
Go to
Section:
31. Kingdom Eubacteria
Cell Type Prokaryote
Number of Cells Unicellular
Nutrition Autotroph or
Heterotroph E. coli
Examples Streptococcus,
Escherichia coli
(E. coli)
Streptococcus
Go to
Section:
32. Bacteria and Archaea
Roles in Ecosystem
• Can cause disease
– Lyme disease, strep throat, syphilis
• Photosynthesis and oxygen production
• Food source
• Nutrient transfer
• Decomposition Spirulina
• Some oil deposits attributed to
cyanobacteria
33. Kingdom Protista
Cell Type Eukaryote
Number of Cells Most Unicellular,
some multicellular
Paramecium
Nutrition Autotroph or
Heterotroph
Examples Amoeba,
Paramecium,
Euglena, Green algae
The “Junk-Drawer”
Kingdom
Amoeba
Go to
Section:
34. Protista – Roles in Ecosystem
• Photosynthesis and oxygen
production
• Food source (brown, red, green
algae)
– Animal feed, fertilizers
– Algae sheets used in some Japanese
dishes
– Additive to puddings, ice cream, salad
dressing, candy (carrageenan and
alginate)
• Can cause disease
– Avian malaria, human malaria,
amoebic dysentery
35. Protista and Red Tides
• Population explosion
of dinoflagellates
• Neurotoxin released
• Shellfish concentrate
toxin
• Humans can be
killed by eating
shellfish
contaminated by
toxin
http://www.redtide.whoi.edu/hab/rtphotos/noctiluca.jpg
36. Kingdom Fungi
Cell Type Eukaryote
Number of Cells Most multicelluar,
some unicelluar
Nutrition Heterotroph Mildew on Leaf
Example Mushroom, yeast,
mildew, mold
Most Fungi are
DECOMPOSERS
Mushroom
Go to
Section:
37. Fungi – Roles in Ecosystem
• Food source
– Mushrooms, truffles, morels
– Fungal colonies in cheeses give them
American chestnut, late 1800s
their flavor
– Beer and wine produced with yeasts
• Antibiotics
• Crop parasites
– Cause loss of food plants, spoilage, infectious
disease
• Claviceps purpurea causes a crop disease
called wild ergot (natural source for LSD)
• Dutch elm disease and Chestnut blight
Claviceps purpurea
40. Kingdom Plantae
Ferns :
Cell Type Eukaryote seedless
vascular
Number of Cells Multicellular
Nutrition Autotroph
Examples Mosses, ferns,
Douglas fir:
conifers, seeds in cones
flowering plants
Sunflowers:
Mosses growing
seeds in
on trees
flowers
Go to
Section:
41. Plants – Roles in Ecosystem
American chestnut, late 1800s
• Food source
• Generate oxygen
• Provide habitat for
humans and wildlife
List 3 functional
roles that plants
play in your life.
42. Kingdom Animalia
Cell Type Eukaryote Bumble bee
Jellyfish
Number of Cells Multicellular
Nutrition Heterotroph
Examples Sponges,
worms, insects, Sage grouse
Hydra
fish, mammals
Poison dart frog
Sponge
Go to
Section:
43. Animals – 2 main groups
Invertebrates & Vertebrates
54. God’s Creation
Day Creation Branch of Science
1 Light Physics, Mathematics
2 Sky Meteorology
3 Oceanography, Geography,
Land, water, plants
Marine biology, Botany
4 Sun, moon, stars Astronomy, Cosmology
5 Birds and Fishes Ornithology, Ichthyology
6 Land animals; man Zoology, Cytology,
7 Genetics,
Ecology
God Rested
54
55. • God saw all that he had made, and it was very
good. And there was evening, and there was
morning—the sixth day.
• Thus the heavens and the earth were completed
in all their vast array.
• By the seventh day God had finished the work
he had been doing; so on the seventh day he
rested from all his work. Then God blessed the
seventh day and made it holy, because on it he
rested from all the work of creating that he had
done.
• Genesis 1:31-Genesis 2:1-2
56. God’s Creation
Day Creation Branch of Science
1 Light Physics, Mathematics
2 Sky Meteorology
3 Land, water, plants Oceanography, Geography,
Marine biology, Botany
4 Sun, moon, stars Astronomy, Cosmology
5 Birds and Fishes Ornithology, Ichthyology
6 Land animals; man Zoology, Cytology,
7 Genetics,
Ecology
God Rested
56
Very good, Completed,
Editor's Notes
Hierarchical Classification Carolus von Linnaeus created a hierarchical classification system using seven taxonomic categories, or taxa (Kingdom, Phylum, Class, Order, Family, Genus, Species). These categories are based on shared physical characteristics, or phenotypes, within each group. Beginning with kingdom, each successive level of classification becomes more and more specific. Organisms within the same order have more in common with one another than organisms within the same class. For example, all species of bears are mammals, but not all mammals are bears. A useful pneumonic tool to help students remember the hierarchical classification system is: “ K ing P hillip C ame O ver F or G reen S oup,” with the first letter of each word representing each category, beginning with kingdom and ending with species. References Campbell, N. E. & Reece, J. B. (2002). Biology (6 th ed.). Benjamin Cummings.
Spirulina fix nitrogen Decompose organic polymers, may be used to break down oil (from spills) Lyme disease – carried by mammals and birds, transmitted by ticks to humans Many heterotrophic bacteria also cause diseases such as strep throat, rheumatic fever, cholera, gonorrhea, syphilis, and toxic shock syndrome. Bacteria can cause disease by destroying cells, releasing toxins, contaminating food, or by the reaction of the body to the infecting bacteria. Bacterial infections can be controlled by vaccinations and antibiotic treatments. Antibiotics interfere with some aspect of the replication of bacteria, and are produced by microorganisms such as fungi, that compete with bacteria for resources. Penicillin, the first antibiotic discovered, inhibits the synthesis of new cell walls in certain types of bacteria. However, the overuse of antibiotics during the past fifty years has led to natural selection favoring antibiotic resistance. There are reportedly more than 50 strains of antibiotic resistant bacteria, necessitating the development of new antibiotics and the frequent change of antibiotics in treatment.
Close up picture of dinoflagellate from this bloom
Lichen pictured is a favorite of caribou. Lacewing using lichen to camoflage (http://www.lichen.com/animals.html)
Symbiosis – 2 or more species live together in close association Mutualism = both benefit Lichen = algae + fungi Mycorrhizae – fungus + plant, fungus helps with water absorption, ion transfer; tree supplies fungus with food (carbohydrates) Lichens are a symbiosis between a photosynthetic organism (alga or cyanobacterium) and a fungus (sac or club). Mycorrhizae are fungi (usually a zygomycete or basidiomycete) symbiotic with the roots of plants. Both relationships are mutualistic : both parties benefit. Fungi provide nutrients from the substrate, the phototroph provides food. Plants with mycorrhizae grow better: the plant gets nutrients from the fungus in exchange for carbohydrates. The word "mycorrhizae" literally means "fungus-roots" and defines the close mutually beneficial relationship between specialized soil fungi (mycorrhizal fungi) and plant roots. About 95% of the world’s land plants form the mycorrhizal relationship in their native habitats. It is estimated that mycorrhizal fungal filaments explore hundreds to thousands more soil volume compared to roots alone. Benefits include: Improved nutrient and water uptake Improved root growth Improved plant growth and yield Improved disease resistance Reduced transplant shock Reduced drought stress http://www.mycorrhizae.com/WhatAreMyco.php
Gray triggerfish Oscar Yellowfin tuna Swordfish Great barracuda