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AMINO ACIDS
Building blocks of protein
Mrs. Praveen Garg
VITS College, Satna
INTRODUCTION
 Amino acids are organic compounds that combine to form
proteins.
 Amino acids and proteins are the building blocks of life.
 When proteins are digested or broken down, amino acids are
left.
 Amino acids contain amine and carboxyl functional groups,
along with a side chain specific to each amino acid.
 The key elements of an amino acid are carbon, hydrogen,
oxygen, and nitrogen, although other elements are found in
the side chains of certain amino acids.
 Amino acids can also be used as a source of energy by the
body.
 The human body uses amino acids to make proteins to help the
body.
• Break down food
• Grow
• Repair body tissue
• Perform many other body functions
• Arginine - Arg – R
• Lysine - Lys – K
• Aspartic acid - Asp – D
• Glutamic acid - Glu – E
• Glutamine - Gln – Q
• Asparagine - Asn – N
• Histidine - His – H
• Serine - Ser – S
• Threonine - Thr – T
• Cysteine - Cys - C
• Tryptophan - Trp – W
• Tyrosine - Tyr – Y
• Methionine - Met – M
• Alanine - Ala – A
• Isoleucine - Ile – I
• Leucine - Leu – L
• Phenylalanine - Phe – F
• Valine - Val – V
• Proline - Pro – P
• Glycine - Gly - G
TYPES OF AMINO ACIDS
The 20 most common amino acids in proteins are listed with their three
letter and one-letter codes:
ESSENTIAL AMINO ACIDS
• Essential amino acids
cannot be made by the body.
As a result, they must come
from food.
Example:
• Histidine, isoleucine,
leucine, lysine, methionine,
phenylalanine,
threonine, tryptophan, and
valine.
NONESSENTIAL AMINO ACIDS
• Nonessential means that
our bodies produce an
amino acid, even if we do
not get it from the food we
eat.
Example:
• Alanine, arginine,
asparagine, aspartic acid,
cysteine, glutamic acid,
glutamine, glycine, proline,
serine, and tyrosine.
CLASSIFICATION
Amino acids are classified into two groups:
 They can be classified according to the core structural functional
groups' locations as alpha-(α-), beta-(β-), gamma-(γ-) or delta-(δ-
) amino acids.
 Other categories relate to polarity, pH level, and side chain group
type (aliphatic, acyclic, aromatic, containing hydroxyl or sulfur,
etc.).
Classification Based on Polarity
Non polar amino acids:
• They have equal number
of amino and carboxilic
group.
• These are hydrophobic
and no charge on the R
group.
• Example: alanine, valine,
leucine, isoleucine,
phenyl alanine, glycine,
tryptophen, methionine
and proline.
Polar amino acid with no charge:
• They do not have any charge on R group.
• They help in participate in hydrogen bonding of protein structure.
• Example: serine, threonine, tyrosine, cysteine, glutamine,
aspargine.
Polar amino acid with positive charge:
• They have more amino groups as compared to carboxyl groups
making it basic.
• Example: Lysine, Arginine, Histidine
Polar amino acid with negative charge:
• They have more carboxilic group than amino group making
them acidic.
• Example: Aspartic acid, Glutamic acid
 Acidic amino acids: These contain one amino and two
carboxilc group.
Example: Aspartic acid, glutamic acid
 Basic amino acids: These contain an additional basic
such as amino group, guanidine, imidazole.
Example: Lysine, Arginine, Histidine
 Neutral amino acids: These contain one amino and one
carboxilic group.
Example: Glycine, Alanine, etc.
Classification Based on Acid/Base
ZWITTER ION
• A zwitterion, also called an inner salt, is a molecule that contains
an equal number of positively and negatively charged functional
groups.
• The example of zwitter ion is amino acid that contain -COOH
and –NH2 group in same molecule.
• In aqueous solution, -COOH group loses a proton (H+) to form a
carboxylate (-COO-) ion while –NH2 group gains a proton to
form –NH3 ion, thus they exist as a dipolar ion at pH 7. Such a
ion is called zwitter ion.
Acidic solution Neutral solution
Zwitter ion
Alkaline solution
• Amino acids are amphoteric molecule, they can donate or
accept protons and act like as acidic and basic.
PROPERTY OF AMINO ACIDS
Physical Properties:
• Amino acids are colorless, crystalline solid.
• They are soluble in water, slightly soluble in alcohol and
dissolve with difficulty in methanol, ethanol, and propanol.
• R-group of amino acids and pH of the solvent play important
role in solubility.
• All amino acids have a high melting point greater than 200o
• All amino acids (except glycine) are optically active.
• Amino acids can connect with a peptide bond involving their
amino and carboxylate groups.
• A covalent bond formed between the alpha-amino group of
one amino acid and an alpha-carboxyl group of other forming
-CO-NH-linkage.
Chemical property
1. Decarboxylation: In this process, amino acids produce
amines.
Example: Histidine Histamine + CO2
Tyrosine Tyramine + CO2
Glutamic acid Gamma aminobutyric acid + CO2
Tryptophen Tryptamine + CO2
,
Due to –COOH group
2. Reaction with ammonia: The carboxyl group of
dicarboxilic amino acids react with NH3 to form amide.
• Aspartic acids + NH3 Asparagine
• Glutamic acids + NH3 Glutamine
3. Salt formation: Amino acids form salts (-COONa) with bases
and form esters (-COOR) with alcohols.
 Due to – NH2 group
1. Reaction with Sanger reagent: 1-Fluoro-2,4-dinitrobenzene
(commonly called Sanger's reagent, dinitrofluorobenzene, DNFB
or FDNB) is a chemical that reacts with the N-terminal amino
acid of polypeptides and produce yellow color derivatives 2,4
dinitrobenzene (DNB).
2. Edmann reaction:
An uncharged peptide is reacted with phenylisothiocyanate
(PITC) at the amino terminus under mildly alkaline conditions
to give a phenylthiocarbamoyl derivative (PTC-peptide).
3. Nin hydrin reaction:
• Ninhydrin reacts with the α-amino group of primary amino
acids producing 'Ruhemann's purple'. The chromophore formed is
the same for all primary amino acids.
Functions of Amino acids
• In particular, 20 amino acids are crucial for life as they form
peptides and proteins and are known to be the building blocks
for all living things.
• The linear sequence of amino acid residues in a polypeptide
chain determines the 3D- configuration of a protein, and the
structure of a protein determines its function.
• Amino acids are essential for the health of the human body.
 They largely promote the production of hormone.
 Structure of muscles
 Human nervous system’s healthy functioning
 The health of vital organs.
 Normal cellular structure
• The amino acids are used by various tissues to synthesize
proteins and to produce nitrogen-containing compounds (e.g.,
purines, heme, creatine, epinephrine), or they are oxidized to
produce energy.
THANK YOU
Amino acids

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Amino acids

  • 1. AMINO ACIDS Building blocks of protein Mrs. Praveen Garg VITS College, Satna
  • 2. INTRODUCTION  Amino acids are organic compounds that combine to form proteins.  Amino acids and proteins are the building blocks of life.  When proteins are digested or broken down, amino acids are left.  Amino acids contain amine and carboxyl functional groups, along with a side chain specific to each amino acid.  The key elements of an amino acid are carbon, hydrogen, oxygen, and nitrogen, although other elements are found in the side chains of certain amino acids.  Amino acids can also be used as a source of energy by the body.
  • 3.  The human body uses amino acids to make proteins to help the body. • Break down food • Grow • Repair body tissue • Perform many other body functions
  • 4. • Arginine - Arg – R • Lysine - Lys – K • Aspartic acid - Asp – D • Glutamic acid - Glu – E • Glutamine - Gln – Q • Asparagine - Asn – N • Histidine - His – H • Serine - Ser – S • Threonine - Thr – T • Cysteine - Cys - C • Tryptophan - Trp – W • Tyrosine - Tyr – Y • Methionine - Met – M • Alanine - Ala – A • Isoleucine - Ile – I • Leucine - Leu – L • Phenylalanine - Phe – F • Valine - Val – V • Proline - Pro – P • Glycine - Gly - G TYPES OF AMINO ACIDS The 20 most common amino acids in proteins are listed with their three letter and one-letter codes:
  • 5. ESSENTIAL AMINO ACIDS • Essential amino acids cannot be made by the body. As a result, they must come from food. Example: • Histidine, isoleucine, leucine, lysine, methionine, phenylalanine, threonine, tryptophan, and valine. NONESSENTIAL AMINO ACIDS • Nonessential means that our bodies produce an amino acid, even if we do not get it from the food we eat. Example: • Alanine, arginine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, proline, serine, and tyrosine. CLASSIFICATION Amino acids are classified into two groups:
  • 6.  They can be classified according to the core structural functional groups' locations as alpha-(α-), beta-(β-), gamma-(γ-) or delta-(δ- ) amino acids.  Other categories relate to polarity, pH level, and side chain group type (aliphatic, acyclic, aromatic, containing hydroxyl or sulfur, etc.).
  • 7. Classification Based on Polarity Non polar amino acids: • They have equal number of amino and carboxilic group. • These are hydrophobic and no charge on the R group. • Example: alanine, valine, leucine, isoleucine, phenyl alanine, glycine, tryptophen, methionine and proline.
  • 8. Polar amino acid with no charge: • They do not have any charge on R group. • They help in participate in hydrogen bonding of protein structure. • Example: serine, threonine, tyrosine, cysteine, glutamine, aspargine.
  • 9. Polar amino acid with positive charge: • They have more amino groups as compared to carboxyl groups making it basic. • Example: Lysine, Arginine, Histidine
  • 10. Polar amino acid with negative charge: • They have more carboxilic group than amino group making them acidic. • Example: Aspartic acid, Glutamic acid
  • 11.  Acidic amino acids: These contain one amino and two carboxilc group. Example: Aspartic acid, glutamic acid  Basic amino acids: These contain an additional basic such as amino group, guanidine, imidazole. Example: Lysine, Arginine, Histidine  Neutral amino acids: These contain one amino and one carboxilic group. Example: Glycine, Alanine, etc. Classification Based on Acid/Base
  • 12. ZWITTER ION • A zwitterion, also called an inner salt, is a molecule that contains an equal number of positively and negatively charged functional groups. • The example of zwitter ion is amino acid that contain -COOH and –NH2 group in same molecule. • In aqueous solution, -COOH group loses a proton (H+) to form a carboxylate (-COO-) ion while –NH2 group gains a proton to form –NH3 ion, thus they exist as a dipolar ion at pH 7. Such a ion is called zwitter ion.
  • 13. Acidic solution Neutral solution Zwitter ion Alkaline solution • Amino acids are amphoteric molecule, they can donate or accept protons and act like as acidic and basic.
  • 14. PROPERTY OF AMINO ACIDS Physical Properties: • Amino acids are colorless, crystalline solid. • They are soluble in water, slightly soluble in alcohol and dissolve with difficulty in methanol, ethanol, and propanol. • R-group of amino acids and pH of the solvent play important role in solubility. • All amino acids have a high melting point greater than 200o • All amino acids (except glycine) are optically active. • Amino acids can connect with a peptide bond involving their amino and carboxylate groups. • A covalent bond formed between the alpha-amino group of one amino acid and an alpha-carboxyl group of other forming -CO-NH-linkage.
  • 15. Chemical property 1. Decarboxylation: In this process, amino acids produce amines. Example: Histidine Histamine + CO2 Tyrosine Tyramine + CO2 Glutamic acid Gamma aminobutyric acid + CO2 Tryptophen Tryptamine + CO2 , Due to –COOH group
  • 16. 2. Reaction with ammonia: The carboxyl group of dicarboxilic amino acids react with NH3 to form amide. • Aspartic acids + NH3 Asparagine • Glutamic acids + NH3 Glutamine 3. Salt formation: Amino acids form salts (-COONa) with bases and form esters (-COOR) with alcohols.
  • 17.  Due to – NH2 group 1. Reaction with Sanger reagent: 1-Fluoro-2,4-dinitrobenzene (commonly called Sanger's reagent, dinitrofluorobenzene, DNFB or FDNB) is a chemical that reacts with the N-terminal amino acid of polypeptides and produce yellow color derivatives 2,4 dinitrobenzene (DNB).
  • 18. 2. Edmann reaction: An uncharged peptide is reacted with phenylisothiocyanate (PITC) at the amino terminus under mildly alkaline conditions to give a phenylthiocarbamoyl derivative (PTC-peptide).
  • 19. 3. Nin hydrin reaction: • Ninhydrin reacts with the α-amino group of primary amino acids producing 'Ruhemann's purple'. The chromophore formed is the same for all primary amino acids.
  • 20. Functions of Amino acids • In particular, 20 amino acids are crucial for life as they form peptides and proteins and are known to be the building blocks for all living things. • The linear sequence of amino acid residues in a polypeptide chain determines the 3D- configuration of a protein, and the structure of a protein determines its function. • Amino acids are essential for the health of the human body.  They largely promote the production of hormone.  Structure of muscles  Human nervous system’s healthy functioning  The health of vital organs.  Normal cellular structure
  • 21. • The amino acids are used by various tissues to synthesize proteins and to produce nitrogen-containing compounds (e.g., purines, heme, creatine, epinephrine), or they are oxidized to produce energy. THANK YOU