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RESEARCH ARTICLE WRITING
Dr. Jeeva Sathya Theesar
NSRG – IMS, Faculty of Science,
University of Malaya
Requirements, some hints and suggestions
What we are going to learn out of this
lecture
 Structure of the research article
 Formatting
 Technical /Software Tools
 Journal Finding and Formatting
 Do’s and Don’ts
 References Preparation
Structure of Research Article
 Creative writing of the manuscript is essential
for presenting the research study
 Research article follows the order: Introduction,
Motivation, Preliminaries, Analysis, Discussion,
and Conclusion – some journal may have
different order
 This order will increase the chance of
publication of the manuscript
 Readers want important aspects of study, not
just stories
Structure
 The Title : instantly convey why your work stands
out from all previous ones. Slightly enigmatic or
'catchy'.
 The Abstract: KISS. Preview. Summary. The
significance of a paper. It is the challenge part. Keep
it concise while at the same time conveying the key
results and ideas behind the paper. It must cover all
aspects of paper in few lines. Decides fate of paper.
 Keywords: For computer database searches. Search
items you would want leading to your paper. Math
Reviews/subject code. Four to five important words
only.
The Introduction Part - VVI
 Many readers and (sad to say) quite possibly the
referee will not get past the introduction. So it
should be beautifully written with much care.
 Up to a quarter of the manuscript might
reasonably be taken up by the introduction and
the preliminaries.
 Most people find it easier once they get onto the
mathematics itself.
 You should try in the introduction to cover the
following checklist.
Writing Intro - Checklist
 Literature: Survey the field so far. Make contacts
with other aspects of the literature.
 Try to connect or reference all the relevant
players in the field.
 This takes knowledge of the literature and above
all a sense of historical perspective.
 Who did really introduce the idea X that you are
using and are giving him or her proper credit?
 This can also be woven into the above by way of
making it interesting.
Writing Intro - Checklist – contd…
 The motivation: This should recall to the reader
why the kind of result mentioned already in the
abstract would be interesting and important.
 It also tells the reader what you think is the
motivation, so that if he or she agrees with the
way you are looking at the field, there's some
probability that the paper will be useful for
them.
 Keep it as down to earth as possible.
Writing Intro – Checklist – contd…
 The results and strategy: The key behind the work. Don't just repeat
the abstract.
 Don't be ashamed or too proud to admit and reference the previous
work ('the shoulders of giants') which inspired and led up to your
result.
 Put everything into perspective along with the existing literature and
conveys how it is you succeeded where others failed.
 What was the key idea which nobody else spotted? It should not reflect
the actual historical progress of your research (which may have been
long and winding) but rather based on how your thinking should have
gone with the benefit of hindsight.
 This is not quite the same as the shortest logical path (which would
not be understood until after the paper is read), but rather involves an
historical element with reference to works and ideas that the reader
might already be familiar with.
 Note that it's rare for a young person to do something totally out of the
blue, and worrisome for a referee.
Writing Intro - Checklist – contd…
 Outline: The organization of the article: This
should be brief but not simply a list.
 State the goal and main achievement of each
section.
 Make it into a story whereby each section is
logically a precursor to the next section.
 What next?
Preliminaries
 This should include technical remarks on notation to be used.
 You can recall elementary things in this section for clarity and
completeness purpose. Give adequate references.
 Here, the goal is to make enough concise explanations and
precise definitions that the reader will be able to refer back to
when reading the paper, without digressions or story-telling.
 Anything in this section is 'safe' in the sense that the reader
does not assume that this is your work. Indeed, the reader
assumes it is not (and the referee can always make you delete it
if it's too much).
 (Just the opposite is true in later sections, where you should not
repeat well-known results or if forced to do so, explain that it is
`for completeness ...' and give completely unambiguous
references to the literature).
 So try to put most of what you will need here in the
preliminaries.
Data and Tools Used
 Materials and Methods: People will want to read this material
selectively. The reader may only be interested in one formula or part of
a procedure.
 This should be the easiest section to write, but many students
misunderstand the purpose.
 The objective is to document all specialized materials and general
procedures, so that another individual may use some or all of the
methods in another study or judge the scientific merit of your work.
 It is not to be a step by step description of everything you did, nor is a
methods section a set of instructions.
 Materials and methods are not a set of instructions.
 Omit all explanatory information and background - save it for the
discussion.
 Omit information that is irrelevant to a third party, such as what color
ice bucket you used, or which individual logged in the data.
Main Results - Analysis
 Finally you get to explain your new results. Each section should begin
with a recall of the goal and strategy of the section in case the reader
forgot. Each section should have a main achievement (Of course it
must be yours’).
 It should contain only results that are new, no matter how logical it
would be to mention the other results not proven by you (that would
be OK in a book or thesis or review article, but research papers should
only contain the incremental data).
 No beautiful logical picture. Too bad. We all have a human weakness to
think that what we spent hours figuring out for ourselves is partly
ours. This is a demon to be resisted.
 Previous work is previous work and don't be too proud to say you are
using it, and whose it is you are using. You should ask yourself how
would you feel if somebody developed your work and integrated it into
theirs without being clear about your contribution.
Main Results - Analysis
 Results must be organized form. No blah blah story here.
 Each of these should be an irreducible 'gem':
 What is the use of putting trivial results?
 Make it better than already proven results, to show that they
were all needed and worthwhile.
 Remarks: The end of the section is a good place to put any
informal remarks. Anything you want to claim, assert or
conjecture but which you haven't thought through formally to
make a theorem/main result, can appear here. Things are easily
forgiven at the ends of sections if the section already had good
results in it.
 These remarks could also lead onto the next section. But don't
overdo that since the beginning of the next section is going to
reintroduce itself anyway. I.e., if you're setting up the next
section it should be in a subtle way that doesn't overlap with the
official set-up which will appear there.
Concluding Remarks
 Concluding Remarks: A good intro and well-written paper does
not need conclusions. But this is the place for comments that
can be understood only now after your new results.
 They are like informal results or consequences that you haven't
worked out yet in detail. You can tell your ideas about these if
you want in the form of expected directions for further work.
 Bibliography: Do a computer search to make sure you have
picked up all relevant recent work. Also, did you fairly reference
the originators of all the works and ideas that you used?
 Don't go by where you first read something (which might have
been only pedagogical) but by where it was really discovered.
 That takes a bit of detective work but we all have to be our own
policepersons.
Format and Software, etc…
 Style and format of research papers varies from subject
to subject (and indeed journal to journal)
 LyX front end and MikTeX backend are good tools for
windows.
 BibTex tools – Jabref or Endnote.
 Spellcheck, Grammatical Errors
 Avoid using MSWord.
 Journal Format mostly have templates, follow it before
submitting.
 Follow ‘Article’ or ‘elsarticle’ Template, for First drafting.
 Use double line space for all draft purpose.
 Put Date on draft article to keep it.
 Start writing while doing the study itself.
Some important Points
 Sentences should logically lead on from one to the next as
smoothly as walking.
 If you want to change the topic, no problem, but warn the
reader by key phrases like 'on the other hand', 'meanwhile', 'in
contrast to this', 'moreover' etc
 A shift of general topic is signaled by a new paragraph.
 Again, previous paragraphs are still active in the readers mind
so any very big shift should be excused by a suitable explanation
like 'Now we come to ...' or 'To conclude this section' or other
orientation signal. The signals could refer back to the
introduction and outline, or might indicate a surprise for the
reader.
 Avoid making sandwiches. You begin with one idea, move on to
another, and then move back to the first one.
Some important Points – contd…
 Validation status of assertions. Every assertion should have a
clear validation status.
 Some languages have long sentences with lots of commas, but
English does not have the grammar to support this. Rather,
sentences should be short and sharp. A shift of general topic is
signaled by a new paragraph.
 Again, previous paragraphs are still active in the readers mind
so any very big shift should be excused by a suitable explanation
like 'Now we come to ...' or 'To conclude this section' or other
orientation signal. The signals could refer back to the
introduction and outline, or might indicate a surprise for the
reader.
 Avoid making sandwiches. You begin with one idea, move on to
another, and then move back to the first one.
 'This' and 'it'. Beware of pronouns like 'this' and 'it'. Is it
absolutely clear and unambiguous what they refer back to?
Some important Points – contd…
 'Never' and 'only'. Beware of 'never' and 'only'. These are strong assertions
and unless you've really proven them it's best to water them down with
'appears to be' or 'it seems'. However, don't use 'probably'.
 Commas. Commas are especially important but hard to give rules for. Don't go
by where you pause when speaking
 Math symbols. Try not to begin or end a sentence with a math symbol. More
precisely, try to avoid math symbols clashing with textual punctuation.
 The exception to this is displayed equations, where the general rule is to put
commas and if necessary a final period, so that one can read through the
displayed equation like text.
 Is it defined? Check that all symbols and terminology are defined to some
extent before they are used.
 This can be done in a formal definition or more informally. One technique in
mathematical work is to put the term for an important concept in a different
font when its usage is being specified for the first time.
 This is especially important in the Preliminaries section, but applies
elsewhere also. On a smaller scale, make sure that any symbols are quietly
specified so that it is clear what they denote.
 Don't assume that your notation is obvious or standard, since others could
have grown up with different conventions.
References
 http://cgi.stanford.edu/~dept-ctl/cgi-
bin/tomprof/posting.php?ID=1176
 http://www.findaphd.com/student/study/stud
y-6.asp
 http://www.ruf.rice.edu/~bioslabs/tools/repor
t/reportform.html
 http://intqhc.oxfordjournals.org/content/16/3/
191.full
 http://www.columbia.edu/cu/biology/ug/resea
rch/paper.html
Question Time
 Your Time to post questions!

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Research article Writing - Requirements, some hints and suggestions

  • 1. RESEARCH ARTICLE WRITING Dr. Jeeva Sathya Theesar NSRG – IMS, Faculty of Science, University of Malaya Requirements, some hints and suggestions
  • 2. What we are going to learn out of this lecture  Structure of the research article  Formatting  Technical /Software Tools  Journal Finding and Formatting  Do’s and Don’ts  References Preparation
  • 3. Structure of Research Article  Creative writing of the manuscript is essential for presenting the research study  Research article follows the order: Introduction, Motivation, Preliminaries, Analysis, Discussion, and Conclusion – some journal may have different order  This order will increase the chance of publication of the manuscript  Readers want important aspects of study, not just stories
  • 4. Structure  The Title : instantly convey why your work stands out from all previous ones. Slightly enigmatic or 'catchy'.  The Abstract: KISS. Preview. Summary. The significance of a paper. It is the challenge part. Keep it concise while at the same time conveying the key results and ideas behind the paper. It must cover all aspects of paper in few lines. Decides fate of paper.  Keywords: For computer database searches. Search items you would want leading to your paper. Math Reviews/subject code. Four to five important words only.
  • 5. The Introduction Part - VVI  Many readers and (sad to say) quite possibly the referee will not get past the introduction. So it should be beautifully written with much care.  Up to a quarter of the manuscript might reasonably be taken up by the introduction and the preliminaries.  Most people find it easier once they get onto the mathematics itself.  You should try in the introduction to cover the following checklist.
  • 6. Writing Intro - Checklist  Literature: Survey the field so far. Make contacts with other aspects of the literature.  Try to connect or reference all the relevant players in the field.  This takes knowledge of the literature and above all a sense of historical perspective.  Who did really introduce the idea X that you are using and are giving him or her proper credit?  This can also be woven into the above by way of making it interesting.
  • 7. Writing Intro - Checklist – contd…  The motivation: This should recall to the reader why the kind of result mentioned already in the abstract would be interesting and important.  It also tells the reader what you think is the motivation, so that if he or she agrees with the way you are looking at the field, there's some probability that the paper will be useful for them.  Keep it as down to earth as possible.
  • 8. Writing Intro – Checklist – contd…  The results and strategy: The key behind the work. Don't just repeat the abstract.  Don't be ashamed or too proud to admit and reference the previous work ('the shoulders of giants') which inspired and led up to your result.  Put everything into perspective along with the existing literature and conveys how it is you succeeded where others failed.  What was the key idea which nobody else spotted? It should not reflect the actual historical progress of your research (which may have been long and winding) but rather based on how your thinking should have gone with the benefit of hindsight.  This is not quite the same as the shortest logical path (which would not be understood until after the paper is read), but rather involves an historical element with reference to works and ideas that the reader might already be familiar with.  Note that it's rare for a young person to do something totally out of the blue, and worrisome for a referee.
  • 9. Writing Intro - Checklist – contd…  Outline: The organization of the article: This should be brief but not simply a list.  State the goal and main achievement of each section.  Make it into a story whereby each section is logically a precursor to the next section.  What next?
  • 10. Preliminaries  This should include technical remarks on notation to be used.  You can recall elementary things in this section for clarity and completeness purpose. Give adequate references.  Here, the goal is to make enough concise explanations and precise definitions that the reader will be able to refer back to when reading the paper, without digressions or story-telling.  Anything in this section is 'safe' in the sense that the reader does not assume that this is your work. Indeed, the reader assumes it is not (and the referee can always make you delete it if it's too much).  (Just the opposite is true in later sections, where you should not repeat well-known results or if forced to do so, explain that it is `for completeness ...' and give completely unambiguous references to the literature).  So try to put most of what you will need here in the preliminaries.
  • 11. Data and Tools Used  Materials and Methods: People will want to read this material selectively. The reader may only be interested in one formula or part of a procedure.  This should be the easiest section to write, but many students misunderstand the purpose.  The objective is to document all specialized materials and general procedures, so that another individual may use some or all of the methods in another study or judge the scientific merit of your work.  It is not to be a step by step description of everything you did, nor is a methods section a set of instructions.  Materials and methods are not a set of instructions.  Omit all explanatory information and background - save it for the discussion.  Omit information that is irrelevant to a third party, such as what color ice bucket you used, or which individual logged in the data.
  • 12. Main Results - Analysis  Finally you get to explain your new results. Each section should begin with a recall of the goal and strategy of the section in case the reader forgot. Each section should have a main achievement (Of course it must be yours’).  It should contain only results that are new, no matter how logical it would be to mention the other results not proven by you (that would be OK in a book or thesis or review article, but research papers should only contain the incremental data).  No beautiful logical picture. Too bad. We all have a human weakness to think that what we spent hours figuring out for ourselves is partly ours. This is a demon to be resisted.  Previous work is previous work and don't be too proud to say you are using it, and whose it is you are using. You should ask yourself how would you feel if somebody developed your work and integrated it into theirs without being clear about your contribution.
  • 13. Main Results - Analysis  Results must be organized form. No blah blah story here.  Each of these should be an irreducible 'gem':  What is the use of putting trivial results?  Make it better than already proven results, to show that they were all needed and worthwhile.  Remarks: The end of the section is a good place to put any informal remarks. Anything you want to claim, assert or conjecture but which you haven't thought through formally to make a theorem/main result, can appear here. Things are easily forgiven at the ends of sections if the section already had good results in it.  These remarks could also lead onto the next section. But don't overdo that since the beginning of the next section is going to reintroduce itself anyway. I.e., if you're setting up the next section it should be in a subtle way that doesn't overlap with the official set-up which will appear there.
  • 14. Concluding Remarks  Concluding Remarks: A good intro and well-written paper does not need conclusions. But this is the place for comments that can be understood only now after your new results.  They are like informal results or consequences that you haven't worked out yet in detail. You can tell your ideas about these if you want in the form of expected directions for further work.  Bibliography: Do a computer search to make sure you have picked up all relevant recent work. Also, did you fairly reference the originators of all the works and ideas that you used?  Don't go by where you first read something (which might have been only pedagogical) but by where it was really discovered.  That takes a bit of detective work but we all have to be our own policepersons.
  • 15. Format and Software, etc…  Style and format of research papers varies from subject to subject (and indeed journal to journal)  LyX front end and MikTeX backend are good tools for windows.  BibTex tools – Jabref or Endnote.  Spellcheck, Grammatical Errors  Avoid using MSWord.  Journal Format mostly have templates, follow it before submitting.  Follow ‘Article’ or ‘elsarticle’ Template, for First drafting.  Use double line space for all draft purpose.  Put Date on draft article to keep it.  Start writing while doing the study itself.
  • 16. Some important Points  Sentences should logically lead on from one to the next as smoothly as walking.  If you want to change the topic, no problem, but warn the reader by key phrases like 'on the other hand', 'meanwhile', 'in contrast to this', 'moreover' etc  A shift of general topic is signaled by a new paragraph.  Again, previous paragraphs are still active in the readers mind so any very big shift should be excused by a suitable explanation like 'Now we come to ...' or 'To conclude this section' or other orientation signal. The signals could refer back to the introduction and outline, or might indicate a surprise for the reader.  Avoid making sandwiches. You begin with one idea, move on to another, and then move back to the first one.
  • 17. Some important Points – contd…  Validation status of assertions. Every assertion should have a clear validation status.  Some languages have long sentences with lots of commas, but English does not have the grammar to support this. Rather, sentences should be short and sharp. A shift of general topic is signaled by a new paragraph.  Again, previous paragraphs are still active in the readers mind so any very big shift should be excused by a suitable explanation like 'Now we come to ...' or 'To conclude this section' or other orientation signal. The signals could refer back to the introduction and outline, or might indicate a surprise for the reader.  Avoid making sandwiches. You begin with one idea, move on to another, and then move back to the first one.  'This' and 'it'. Beware of pronouns like 'this' and 'it'. Is it absolutely clear and unambiguous what they refer back to?
  • 18. Some important Points – contd…  'Never' and 'only'. Beware of 'never' and 'only'. These are strong assertions and unless you've really proven them it's best to water them down with 'appears to be' or 'it seems'. However, don't use 'probably'.  Commas. Commas are especially important but hard to give rules for. Don't go by where you pause when speaking  Math symbols. Try not to begin or end a sentence with a math symbol. More precisely, try to avoid math symbols clashing with textual punctuation.  The exception to this is displayed equations, where the general rule is to put commas and if necessary a final period, so that one can read through the displayed equation like text.  Is it defined? Check that all symbols and terminology are defined to some extent before they are used.  This can be done in a formal definition or more informally. One technique in mathematical work is to put the term for an important concept in a different font when its usage is being specified for the first time.  This is especially important in the Preliminaries section, but applies elsewhere also. On a smaller scale, make sure that any symbols are quietly specified so that it is clear what they denote.  Don't assume that your notation is obvious or standard, since others could have grown up with different conventions.
  • 19. References  http://cgi.stanford.edu/~dept-ctl/cgi- bin/tomprof/posting.php?ID=1176  http://www.findaphd.com/student/study/stud y-6.asp  http://www.ruf.rice.edu/~bioslabs/tools/repor t/reportform.html  http://intqhc.oxfordjournals.org/content/16/3/ 191.full  http://www.columbia.edu/cu/biology/ug/resea rch/paper.html
  • 20. Question Time  Your Time to post questions!