This document discusses glycolipids, which are lipids that contain a carbohydrate component. Glycolipids are present on the surface of eukaryotic cell membranes and play important roles in cell-cell recognition and interactions, immune response, and cellular proliferation and growth. There are two main types of glycolipids - glycoglycerolipids, which contain a glycerol backbone, and glycosphingolipids, based on sphingolipids. Glycolipids perform functions like mediating cell-cell interactions through binding of complementary carbohydrates, initiating immune response through selectin binding, and determining blood types based on cell surface antigens.
What is Glycoprotein ?:
Glycoproteins are proteins that contain oligosaccharide chains (glycans) covalently attached to polypeptide side-chains.
This process is known as glycosylation.
The carbohydrate is attached to the protein during the following modifications: Co-translational modification & Post-translational modification.
In proteins that have segments extending extracellularly, the extracellular segments are often glycosylated.
What is Glycoprotein ?:
Glycoproteins are proteins that contain oligosaccharide chains (glycans) covalently attached to polypeptide side-chains.
This process is known as glycosylation.
The carbohydrate is attached to the protein during the following modifications: Co-translational modification & Post-translational modification.
In proteins that have segments extending extracellularly, the extracellular segments are often glycosylated.
Proteoglycans are protein chains that are covalently bonded at multiple sites to a class of polysaccharides, known as glycosaminoglycans.Glycosaminoglycans constitute 95% of proteins.Proteoglycans are synthesised in RE and transported to GA where they are modified in to various forms.Proteoglycans are major component of ECM and their role is depended on the type of GAGs they associate with.
Introduction-Cell wall and functions
Gram +ve and -ve cell wall
Bacterial cell wall - structure
Peptidoglycan-Composition and Structure
Types of polysaccharidesBacterial cell wall
Functions of polysaccharides in Bacterial cell wall
INTRODUCTION
STRUCTURE
TYPES OF BONDS
N-LINKED GLYCOSYLATION
O-LINKED GLYCOSYLATION
AMOUNT OF CARBOHYDRATES PRESENT IN GLYCOPROTEIN
BIOLOGICAL SIGNIFICANCE AND FUNCTION
I CELL DISEASE
BIOLOGICAL ADVANTAGE OF ADDING OLIGOSACCHARIDES TO PROTEIN
CONCLUSION
REFERENCES
Proteoglycans are protein chains that are covalently bonded at multiple sites to a class of polysaccharides, known as glycosaminoglycans.Glycosaminoglycans constitute 95% of proteins.Proteoglycans are synthesised in RE and transported to GA where they are modified in to various forms.Proteoglycans are major component of ECM and their role is depended on the type of GAGs they associate with.
Introduction-Cell wall and functions
Gram +ve and -ve cell wall
Bacterial cell wall - structure
Peptidoglycan-Composition and Structure
Types of polysaccharidesBacterial cell wall
Functions of polysaccharides in Bacterial cell wall
INTRODUCTION
STRUCTURE
TYPES OF BONDS
N-LINKED GLYCOSYLATION
O-LINKED GLYCOSYLATION
AMOUNT OF CARBOHYDRATES PRESENT IN GLYCOPROTEIN
BIOLOGICAL SIGNIFICANCE AND FUNCTION
I CELL DISEASE
BIOLOGICAL ADVANTAGE OF ADDING OLIGOSACCHARIDES TO PROTEIN
CONCLUSION
REFERENCES
Polysaccharides - Biochemistry for Msc StudentsKEVENLIAM
This note is based on polysaccharides and glycoprotein which is useful for MSc zoology students. All the points including the structure is being added.
Glycoprotein, lipoprotein, structure and functionKAUSHAL SAHU
INTRODUCTION
DEFINITION
STRUCTURE
TYPES OF BONDS
N-LINKED GLYCOSYLATION
O-LINKED GLYCOSYLATION
AMOUNT OF CARBOHYDRATES PRESENT IN GLYCOPROTEIN
BIOLOGICAL SIGNIFICANCE AND
FUNCTION
BIOLOGICAL ADVANTAGE OF ADDING OLIGOSACCHARIDES TO PROTEIN
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
40. GLYCOLIPIDS
• Glycolipids are lipids with a glycosidic (covalent) bond to a
carbohydrate.
• Their role is to keep the cell membrane stability and also to facilitate
cellular recognition.
• It is important in the immune response and also in the connections
which allow cells to connect to form tissues.
• Glycolipids are present on the surface of all the eukaryotic cell
membranes, extending out from the phospholipid bilayer into the
extracellular environment.
41. GLYCOLIPIDS - STRUCTURE
• A glycolipid is characterized by the appearance of the monosaccharide or
the oligosaccharide bound to the lipid moiety.
• Glycerolipids and sphingolipids, which have glycerol as well as
sphingosine backbones, are the most common lipids in the cellular
membranes.
• Fatty acids are linked to this backbone, giving the lipid a non-polar tail
and a polar head.
42. GLYCOLIPIDS
• The cell membrane's lipid bilayer is composed of two layers of lipids,
with the polar head groups forming the inner and also outer surface
areas of the membrane and the non-polar fatty acid tails forming the
inner part of the membrane.
• The ligand components of glycolipids are the saccharides that are
attached to the polar head groups of the outside of the cell and are
also polar, permitting them to be soluble in an aqueous environment
cellular membrane.
43. GLYCOLIPIDS
• A glycosidic bond, which is a covalent bond, is formed between the
lipids and the saccharide to form a glycoconjugate.
• A free hydroxyl group on the lipid’s backbone is bound by the sugar's
anomeric carbon.
• These saccharides have different structures depending on the
molecules to which they bind.
• TWO TYPES OF GLYCOLIPIDS
• 1. GLYCOGLYCEROLIPIDS
• 2. GLYCOSPHINGOLIPIDS
44. GLYCOGLYCEROLIPIDS
• Glycoglycerolipids: These are a type of glycolipid that consists of an
acetylated as well as non-acetylated glycerol lipid complex that has at
least one fatty acid.
• Glyceroglycolipids are commonly associated with photosynthesizing
membranes and the functions they serve.
• The carbohydrate attached determines the subcategory of
glyceroglycolipids.
45. GLYCOGLYCEROLIPIDS
• Galactolipids: They are lipid molecules that have a galactose
sugar connected to them.
• They're observed in chloroplast membranes and have
photosynthetic properties.
• Sulfolipids: They are lipids with a sulfur-containing substituent
in the sugar moiety.
• Sulfoquinovosyl diacylglycerols, which are associated with the
sulfur cycle in plants, are an important group.
46. GLYCOSHINGOLIPIDS
• Glycosphingolipids: These are a type of glycolipid that is based on
sphingolipids. Glycosphingolipids are primarily found in the nervous
system and are involved in cell signaling.
• Cerebrosides
• Gangliosides
• Globosides
• Glycophosphosphingolipids
• Glycophosphatidylinositols
47. GLYCOSPHINGOLIPIDS
• Cerebrosides: They are a type of glycosphingolipid found in neuronal
membranes.
• Galactocerebrosides: It is a cerebrosides that contain galactose as the
saccharide moiety.
• Glucocerebrosides: It is a cerebroside with glucose like that of the
saccharide moiety that is commonly found throughout non-neural
tissue.
• Sulfatides: It is a type of glycolipid that has a sulphate group within
carbohydrate and a ceramide lipid backbone. They play a variety of
biological roles, ranging from immune reaction to nervous system
signaling.
48. GLYCOSPHINGOLIPIDS
• Gangliosides: They are the most complex glycolipids found in
animals.
• They are composed of negatively charged oligosaccharides with
one or even more sialic acid residues; over 200 gangliosides
have been recognised.
• They are most plentiful in nerve cells.
• Globosides: They are glycosphingolipids that contain more or
one sugar as portion of a carbohydrate complex.
• They serve several functions; inability to degrade such
molecules results in Fabry disease.
49. GLYCOSPHINGOLIPIDS
• Glycophosphosphingolipids: They are complex
glycophospholipids found in microorganisms, yeasts, and crops,
in which they were originally known as "phytoglycolipids."
• They could be as complex as animals' negatively charged
gangliosides.
• Glycophosphatidylinositols: They are glycolipid subclass
described by a phosphatidylinositol lipid functional group bound
to a carbohydrate complex.
• They can bind to the C-terminus of a protein and have different
functions depending on which protein they are bound to.
50. GLYCOLIPIDS - FUNCTION
• Cell – Cell Interaction
• Glycolipid's primary function in the body is to act as a recognition
sequence for cell-cell interactions.
• The glycolipid saccharide will bind to a complementary carbohydrate
or a lectin (carbohydrate-binding protein) of a neighboring cell.
• The interaction of such cell surface markers serves as the foundation
for cell recognition and initiates cellular functions that make a
contribution to events such as regulatory, growth, and apoptosis.
51. GLYCOLIPIDS - FUNCTION
• IMMUNE RESPONSE
• The interaction among both leukocytes and endothelial cells throughout
inflammation is an example of how glycolipids function within the body.
• To initiate the immune response, selectins, a type of lectin located on the
surface of leukocytes as well as endothelial cells, bind to carbohydrates
attached to glycolipids.
• Because of this binding, leukocytes leave circulation as well as congregate
near the location of the inflammation.
• This is the first binding mechanism, followed either by the expression of
integrins, which establish stronger bonds but also allow leukocytes to
relocate to the inflammatory sites.
• Glycolipids are also involved in other responses, such as virus recognition
of host cells.
52. GLYCOLIPIDS - FUNCTION
• BLOOD TYPES
• Blood types are examples of how the glycolipids on the cell
membranes mediate cell-environment interactions.
• The oligosaccharide connected to a particular glycolipid on the surface
of the red blood cells, which behaves as an antigen, determines the
four major human blood types (A, B, AB, and O).
53. GLYCOLIPIDS - FUNCTION
• CELL PROLIFERATION
• Glycolipids have been shown to regulate cell growth through
connections with the growth factor receptors.
• Intracellular ceramide stimulates the DNA synthesis throughout
endothelial smooth muscle cells and platelet-derived growth
factor-induced mitogenesis.
• Glycosphingolipids are abundant in the cell membrane of cancer
cells, where antibodies trying to target these gangliosides cause
apoptosis. Treatment with the anti-ganglioside GD2 monoclonal
antibodies induces apoptosis in human lung cancer cells
expressing GD2.ell death mediator.