UNIT-5 Protein Engineering: Brief introduction to protein engineering,Use of ...Shyam Bass
UNIT-5 6th Sem B.PHARMA PHARMACEUTICAL BIOTECHNOLOGY)
Protein Engineering: Brief introduction to protein engineering, Use of microbes in industry, Production of enzymes-general considerations, Amylase, Catalase, peroxidase, Lipase Basic principles of genetic engineering
BY- SHYAM BASS
Protein engineering involves modifying protein structure using recombinant DNA technology or chemical treatment to improve function for use in medicine, industry, and agriculture. The objectives of protein engineering are to create superior enzymes for specific chemical production, produce enzymes in large quantities, and produce superior biological compounds. Protein engineering aims to alter properties like kinetic properties, thermostability, stability in nonaqueous solvents, substrate specificity, and cofactor requirements to meet industrial needs. Common methods for protein engineering include mutagenesis, selection, and recombinant DNA technology.
Pharmaceutical biotechnology is the application of biotechnology principles to develop drugs. It aims to design drugs tailored to an individual's genetics for maximum therapeutic effect. Key applications include recombinant DNA vaccines, drugs, and proteins. Advantages include pharmacogenomics to customize medicine based on genetics. Recombinant DNA and monoclonal antibodies also provide opportunities for new drug development and delivery approaches. Common biotechnology products are antibodies, proteins, and recombinant DNA products. Therapeutic uses include detecting and treating genetic diseases, cancer, AIDS, and autoimmune diseases.
Protein engineering is the process of developing useful or valuable proteins. It is a young discipline, with much research taking place into the understanding of protein folding and recognition for protein design principles
Introduction to Pharmaceutical BiotechnologyTheabhi.in
This document provides an introduction to biotechnology, including definitions of biotechnology, the historical background of biotechnology, and its applications. It discusses how biotechnology has been used since ancient times in practices like fermentation and more recently in areas like genetic engineering and drug development. The document also reviews the growth of the biotechnology industry in India and key government initiatives to support the sector.
PHARMACEUTICAL BIOTECHNOLOGY BY PHARM.ISA HASSAN ABUBAKARISAHASSANABUBAKAR68
PHARMACEUTICALS BIOTECHNOLOGY IS A BRANCH OF SCIENCE THAT INVOLVES THE USE OF RECOMBINANT DNA FOR THE EFFECTIVE MANUFACTURE OF SOME EFFECTIVE DRUGS OR MEDICINE,EXAMPLE LIKE RECOMBINANT DNA VACCINE,RECOMBINANT DNA DRUGS,RECOMBINANT DNA ENZYMES,RECOMBINANT DNA INSULIN,RECOMBINANT DNA YEAST E.T.C. NOWADAYS PHARMACEUTICAL INDUSTRIES USES THIS RECOMBINANT DNA IN THE PRODUCTION OF VARIOUS CATEGORIES OF MEDICINES.
PRESENTED BY ISA HASSAN ABUBAKAR FROM NIGERIA
The document provides an overview of protein engineering. It discusses the human organ system and how proteins are involved. It then covers basics of proteins and amino acids, as well as how proteins are manufactured in biological systems. The document outlines different levels of protein structure and the functions of proteins. It also summarizes the process from DNA to protein. Key aspects of protein engineering like objectives, rationale, challenges and approaches are described. The document is an introductory lecture on protein engineering.
Microbial biotransformation uses microorganisms like bacteria, fungi, and actinomycetes to modify organic compounds through enzymatic reactions. Key reactions include oxidation, reduction, hydrolysis, and others. These transformations are used commercially to produce pharmaceuticals, vitamins, antibiotics, and other chemicals. For example, microbes can hydroxylate steroids through oxidation or reduce ketones and aldehydes. Biotransformation offers advantages like selectivity and mild reaction conditions compared to chemical synthesis.
UNIT-5 Protein Engineering: Brief introduction to protein engineering,Use of ...Shyam Bass
UNIT-5 6th Sem B.PHARMA PHARMACEUTICAL BIOTECHNOLOGY)
Protein Engineering: Brief introduction to protein engineering, Use of microbes in industry, Production of enzymes-general considerations, Amylase, Catalase, peroxidase, Lipase Basic principles of genetic engineering
BY- SHYAM BASS
Protein engineering involves modifying protein structure using recombinant DNA technology or chemical treatment to improve function for use in medicine, industry, and agriculture. The objectives of protein engineering are to create superior enzymes for specific chemical production, produce enzymes in large quantities, and produce superior biological compounds. Protein engineering aims to alter properties like kinetic properties, thermostability, stability in nonaqueous solvents, substrate specificity, and cofactor requirements to meet industrial needs. Common methods for protein engineering include mutagenesis, selection, and recombinant DNA technology.
Pharmaceutical biotechnology is the application of biotechnology principles to develop drugs. It aims to design drugs tailored to an individual's genetics for maximum therapeutic effect. Key applications include recombinant DNA vaccines, drugs, and proteins. Advantages include pharmacogenomics to customize medicine based on genetics. Recombinant DNA and monoclonal antibodies also provide opportunities for new drug development and delivery approaches. Common biotechnology products are antibodies, proteins, and recombinant DNA products. Therapeutic uses include detecting and treating genetic diseases, cancer, AIDS, and autoimmune diseases.
Protein engineering is the process of developing useful or valuable proteins. It is a young discipline, with much research taking place into the understanding of protein folding and recognition for protein design principles
Introduction to Pharmaceutical BiotechnologyTheabhi.in
This document provides an introduction to biotechnology, including definitions of biotechnology, the historical background of biotechnology, and its applications. It discusses how biotechnology has been used since ancient times in practices like fermentation and more recently in areas like genetic engineering and drug development. The document also reviews the growth of the biotechnology industry in India and key government initiatives to support the sector.
PHARMACEUTICAL BIOTECHNOLOGY BY PHARM.ISA HASSAN ABUBAKARISAHASSANABUBAKAR68
PHARMACEUTICALS BIOTECHNOLOGY IS A BRANCH OF SCIENCE THAT INVOLVES THE USE OF RECOMBINANT DNA FOR THE EFFECTIVE MANUFACTURE OF SOME EFFECTIVE DRUGS OR MEDICINE,EXAMPLE LIKE RECOMBINANT DNA VACCINE,RECOMBINANT DNA DRUGS,RECOMBINANT DNA ENZYMES,RECOMBINANT DNA INSULIN,RECOMBINANT DNA YEAST E.T.C. NOWADAYS PHARMACEUTICAL INDUSTRIES USES THIS RECOMBINANT DNA IN THE PRODUCTION OF VARIOUS CATEGORIES OF MEDICINES.
PRESENTED BY ISA HASSAN ABUBAKAR FROM NIGERIA
The document provides an overview of protein engineering. It discusses the human organ system and how proteins are involved. It then covers basics of proteins and amino acids, as well as how proteins are manufactured in biological systems. The document outlines different levels of protein structure and the functions of proteins. It also summarizes the process from DNA to protein. Key aspects of protein engineering like objectives, rationale, challenges and approaches are described. The document is an introductory lecture on protein engineering.
Microbial biotransformation uses microorganisms like bacteria, fungi, and actinomycetes to modify organic compounds through enzymatic reactions. Key reactions include oxidation, reduction, hydrolysis, and others. These transformations are used commercially to produce pharmaceuticals, vitamins, antibiotics, and other chemicals. For example, microbes can hydroxylate steroids through oxidation or reduce ketones and aldehydes. Biotransformation offers advantages like selectivity and mild reaction conditions compared to chemical synthesis.
Protein engineering and its techniques himanshuhimanshu kamboj
b pharma 6th sem
pharmaceutical biotechnology
Protein engineering
Objectives of protein engineering
Rationale of protein engineering
Protein engineering methods
Rational design -site-directed mutagenesis methods
Advantages and disadvantages of rational design
Directed evolution -random mutagenesis
Advantages and disadvantages of directed evolution
Peptidomimetics
Classification of peptidomimetics
Advantages and disadvantages of peptidomimetics
Flow cytometry
Instrumentation
Principle
components
Biosensors working and application in pharmaceutical industryShivraj Jadhav
Biosensors convert biological responses into electrical signals and were pioneered by Professor Leland C. Clark. They should provide accurate, precise, reproducible results using cheap, small, portable devices operable by semi-skilled users. Biosensors contain bioreceptors, transducers, signal processors and displays. Depending on the transducer, examples include electrochemical, amperometric, potentiometric, conductometric, thermometric, optical and piezoelectric biosensors. Biosensors have wide applications in medicine such as glucose monitoring, infectious disease diagnosis, and detection of cardiac markers.
Objective:
To create a superior enzymes to catalyze the production of high value specific chemicals.
To produce enzyme in large quantities.
Eliminate the need for co factor in enzymatic reaction.
Change substrate binding sites to increase specificity.
Change the thermal tolerance and pH stability.
Increase protein resistance to proteases.
To produce biological compounds.
Investigate how desired mutations can be introduced into a cloned gene
This document discusses protein engineering and methods to improve protein stability. It begins by defining protein engineering as modifying protein structure using recombinant DNA technology or chemical treatment to achieve desirable functions. The objectives of protein engineering are outlined, such as creating superior enzymes for industrial use. Methods of protein engineering discussed include mutagenesis and gene modification techniques. Strategies to increase protein stability through additions like disulfide bonds or changes to amino acids are also presented. The document provides examples of protein engineering applications in medicine, industry and agriculture.
This document discusses microbial biotransformation of steroids. It begins with an introduction and definitions of biotransformation. It then covers the history of microbial steroid transformations, advantages of biotransformation, and the phases and requirements of the process. Methods used like oxidation and halogenation are described. Examples of microbial hydroxylation and epoxidation reactions are given. The procedure for carrying out biotransformations is outlined, including using nutritionally rich media, solvent extraction of products, and analytical techniques for structure elucidation. Microbial biotransformations are shown to be useful for producing industrial compounds like steroids and antibiotics.
Biotechnology is the use of living organisms to develop products and technologies. Pharmaceutical biotechnology applies biotechnology principles to develop drugs. The majority of current drugs are biologics such as antibodies, nucleic acids, and vaccines. Biotechnology methods are important in drug research and development, with key applications in oncology, metabolic disorders, and musculoskeletal disorders. Examples of biotech drugs include insulin for diabetes, gene therapy to replace mutated genes, clotting factors for hemophilia, human serum albumin for burns treatment, and engineered enzymes for enzyme deficiencies.
An immobilized enzyme is an enzyme that has had its movement restricted by attaching it to a solid support. There are several reasons to immobilize enzymes, including protection from degradation, ability to reuse the enzyme for multiple reactions at a lower cost, and easy separation of products from enzymes. Common methods for immobilization include adsorption, entrapment, covalent binding, and cross-linking. Each method has advantages and disadvantages related to stability, activity loss, and reusability of the immobilized enzyme.
The document discusses microbial biotransformation, which refers to biological processes in which microorganisms convert organic compounds into structurally modified reusable products through enzymatic reactions. It notes that biotransformation has several advantages over chemical synthesis, including specificity, mild reaction conditions, and reduced waste. Common biotransformation reactions include oxidation, reduction, hydrolysis, and isomerization. Examples of applications include producing steroids like testosterone and cortisone through microbial transformation, as well as transforming antibiotics, fatty acids, and degrading pollutants.
Use of microbes in industry. Production of enzymes-General consideration-Amyl...Steffi Thomas
Industrial uses of microbes, properties of useful industrial microbes, various industrial products, production of enzymes-general consideration-amylase, catalase, peroxidase, lipase, protease, penicillinase, procedure for culturing bacteria and inoculum preparation, submerged fermentation and solid state fermentation, uses of different enzymes
The document discusses protein engineering and techniques used for it. Protein engineering involves altering cloned DNA to modify protein properties. It merges molecular biology, protein chemistry, and other disciplines. Techniques include genetic modifications like site-directed mutagenesis and chemical modifications. Site-directed mutagenesis allows specific changes to the DNA base using methods like oligonucleotide primers and PCR. This allows investigation of protein function and commercial applications like creating detergent-stable enzymes. Protein engineering has applications in increasing stability, activity and investigating protein properties.
The document discusses various approaches used in drug design, including quantitative structure activity relationship (QSAR) analysis. QSAR uses physicochemical parameters like partition coefficient, electronic parameters, and steric parameters to develop mathematical models correlating a drug molecule's structure to its biological activity. The goal is to predict activity for new compounds and guide drug design. Parameters commonly used in QSAR include log P for hydrophobicity, Hammett constants for electronics, and Taft constants for sterics. Methods involve Hansch analysis, Free Wilson models, and other statistical techniques.
THE DRUG DESIGN AND DEVELOPMENT BASED ON DRUG DISCOVERY ,HERE ITS NEED RATIONALE ARE EXPLAINED ALSO QSAR, MOLECULAR DOCKING ITS HISTORY NEED, STRUCTURE BASED DRUG DESIGN IN EASY WAY WE HAVE MENTIONED. THIS WILL MAKE READERS EASY TO COLLECT DATA AT A PLACE ALL OVER THIS IS FOR PHARMA STUDENTS, ACADEMICS, PROFESSIONL AND OST USEFUL FOR RESEARCHERS.
THANK YOU
HOPE YOU WILL LIKE AND SHARE
genetic engineering, principles, b pharma 6th sem, biotechnology
What is a gene ?
Definition
History
Process
Molecular tools of genetic engineering
Restriction enzymes
History of restriction enzyme
Mechanism of action
Types of restriction enzymes
Application of restriction enzymes
Blunt ends
Sticky ends
transgenic
cisgenic.
knockout organism.
Host organism vector
TRANSGENIC PLANTS
DOLLY THE SHIP
TRANSGENIC ANIMALS
Polypeptide antibiotics are a diverse class of natural antibiotics composed of amino acids joined by amide bonds. They are low molecular weight cationic polypeptides that act as powerful bactericidal agents against both gram-positive and gram-negative bacteria. Examples include gramicidin, bacitracin, polymyxin-B, and colistin. These antibiotics act by disrupting bacterial membranes through detergent-like and pseudophore formation mechanisms, leading to ion leakage and inactivation of endotoxins. In addition, chloramphenicol, vancomycin, and novobiocin are classified as miscellaneous antibiotics that have bactericidal properties through inhibition of protein synthesis or bacterial cell wall synthesis.
UNIT-1 Introduction to biotechnology and enzyme immobilisation Brief introduc...Shyam Bass
(6th Sem B.Pharma Pharmaceutical Biotechnology)
UNIT-1 Introduction to biotechnology and enzyme immobilization Brief introduction to biotechnology, Enzyme biotechnology- methods of enzyme immobilization and applications, biosensors- working and applications of biosensors in pharmaceutical industries
This document discusses enzyme biotechnology and methods of enzyme immobilization. It begins by defining enzymes and their function in cells. It then describes the different methods of immobilizing enzymes, including adsorption, covalent bonding, entrapment, cross-linking/copolymerization, and encapsulation. The advantages and disadvantages of each method are provided. Overall, the document provides an overview of enzyme biotechnology with a focus on immobilization techniques.
Enzyme definition, Enzyme immobilization introduction , Enzyme immobilization definition, Explanation about support/ matrix, Examples about immobilized enzymes and their product, Advantages of immobilization, Applications of immobilization, Methods of immobilization in different categories like Adsorption method, Covalent bonding method, Entrapment method, Co polymerization /Cross linking method, Encapsulation method, Applications of immobilized enzymes, Diagrammatic explanation about methods of immobilization.
This document discusses various applications of protein engineering in different industries and fields. It describes how protein engineering is used in the food industry to modify enzymes like proteases, amylases, and lipases to improve their properties. It also discusses applications in environmental remediation, medicine like cancer treatment, biopolymer production, nanobiotechnology, and redox proteins. The document provides an overview of the wide range of uses of protein engineering across diverse domains.
This document discusses metabolic engineering. Metabolic engineering modifies cellular properties through recombinant DNA technology to alter metabolic pathways for production of chemicals, fuels, pharmaceuticals and medicine. It requires overexpression or downregulation of proteins in pathways so cells produce new products. The first step is understanding the host cell environment for genetic modifications, and the effect of modifications on growth should be examined. Genetic manipulation may negatively impact metabolic burden. Metabolic engineering is used to produce various compounds through methods like eliminating competing pathways, expressing foreign enzymes, and optimizing cofactors like NAD+/NADH.
Protein engineering and its techniques himanshuhimanshu kamboj
b pharma 6th sem
pharmaceutical biotechnology
Protein engineering
Objectives of protein engineering
Rationale of protein engineering
Protein engineering methods
Rational design -site-directed mutagenesis methods
Advantages and disadvantages of rational design
Directed evolution -random mutagenesis
Advantages and disadvantages of directed evolution
Peptidomimetics
Classification of peptidomimetics
Advantages and disadvantages of peptidomimetics
Flow cytometry
Instrumentation
Principle
components
Biosensors working and application in pharmaceutical industryShivraj Jadhav
Biosensors convert biological responses into electrical signals and were pioneered by Professor Leland C. Clark. They should provide accurate, precise, reproducible results using cheap, small, portable devices operable by semi-skilled users. Biosensors contain bioreceptors, transducers, signal processors and displays. Depending on the transducer, examples include electrochemical, amperometric, potentiometric, conductometric, thermometric, optical and piezoelectric biosensors. Biosensors have wide applications in medicine such as glucose monitoring, infectious disease diagnosis, and detection of cardiac markers.
Objective:
To create a superior enzymes to catalyze the production of high value specific chemicals.
To produce enzyme in large quantities.
Eliminate the need for co factor in enzymatic reaction.
Change substrate binding sites to increase specificity.
Change the thermal tolerance and pH stability.
Increase protein resistance to proteases.
To produce biological compounds.
Investigate how desired mutations can be introduced into a cloned gene
This document discusses protein engineering and methods to improve protein stability. It begins by defining protein engineering as modifying protein structure using recombinant DNA technology or chemical treatment to achieve desirable functions. The objectives of protein engineering are outlined, such as creating superior enzymes for industrial use. Methods of protein engineering discussed include mutagenesis and gene modification techniques. Strategies to increase protein stability through additions like disulfide bonds or changes to amino acids are also presented. The document provides examples of protein engineering applications in medicine, industry and agriculture.
This document discusses microbial biotransformation of steroids. It begins with an introduction and definitions of biotransformation. It then covers the history of microbial steroid transformations, advantages of biotransformation, and the phases and requirements of the process. Methods used like oxidation and halogenation are described. Examples of microbial hydroxylation and epoxidation reactions are given. The procedure for carrying out biotransformations is outlined, including using nutritionally rich media, solvent extraction of products, and analytical techniques for structure elucidation. Microbial biotransformations are shown to be useful for producing industrial compounds like steroids and antibiotics.
Biotechnology is the use of living organisms to develop products and technologies. Pharmaceutical biotechnology applies biotechnology principles to develop drugs. The majority of current drugs are biologics such as antibodies, nucleic acids, and vaccines. Biotechnology methods are important in drug research and development, with key applications in oncology, metabolic disorders, and musculoskeletal disorders. Examples of biotech drugs include insulin for diabetes, gene therapy to replace mutated genes, clotting factors for hemophilia, human serum albumin for burns treatment, and engineered enzymes for enzyme deficiencies.
An immobilized enzyme is an enzyme that has had its movement restricted by attaching it to a solid support. There are several reasons to immobilize enzymes, including protection from degradation, ability to reuse the enzyme for multiple reactions at a lower cost, and easy separation of products from enzymes. Common methods for immobilization include adsorption, entrapment, covalent binding, and cross-linking. Each method has advantages and disadvantages related to stability, activity loss, and reusability of the immobilized enzyme.
The document discusses microbial biotransformation, which refers to biological processes in which microorganisms convert organic compounds into structurally modified reusable products through enzymatic reactions. It notes that biotransformation has several advantages over chemical synthesis, including specificity, mild reaction conditions, and reduced waste. Common biotransformation reactions include oxidation, reduction, hydrolysis, and isomerization. Examples of applications include producing steroids like testosterone and cortisone through microbial transformation, as well as transforming antibiotics, fatty acids, and degrading pollutants.
Use of microbes in industry. Production of enzymes-General consideration-Amyl...Steffi Thomas
Industrial uses of microbes, properties of useful industrial microbes, various industrial products, production of enzymes-general consideration-amylase, catalase, peroxidase, lipase, protease, penicillinase, procedure for culturing bacteria and inoculum preparation, submerged fermentation and solid state fermentation, uses of different enzymes
The document discusses protein engineering and techniques used for it. Protein engineering involves altering cloned DNA to modify protein properties. It merges molecular biology, protein chemistry, and other disciplines. Techniques include genetic modifications like site-directed mutagenesis and chemical modifications. Site-directed mutagenesis allows specific changes to the DNA base using methods like oligonucleotide primers and PCR. This allows investigation of protein function and commercial applications like creating detergent-stable enzymes. Protein engineering has applications in increasing stability, activity and investigating protein properties.
The document discusses various approaches used in drug design, including quantitative structure activity relationship (QSAR) analysis. QSAR uses physicochemical parameters like partition coefficient, electronic parameters, and steric parameters to develop mathematical models correlating a drug molecule's structure to its biological activity. The goal is to predict activity for new compounds and guide drug design. Parameters commonly used in QSAR include log P for hydrophobicity, Hammett constants for electronics, and Taft constants for sterics. Methods involve Hansch analysis, Free Wilson models, and other statistical techniques.
THE DRUG DESIGN AND DEVELOPMENT BASED ON DRUG DISCOVERY ,HERE ITS NEED RATIONALE ARE EXPLAINED ALSO QSAR, MOLECULAR DOCKING ITS HISTORY NEED, STRUCTURE BASED DRUG DESIGN IN EASY WAY WE HAVE MENTIONED. THIS WILL MAKE READERS EASY TO COLLECT DATA AT A PLACE ALL OVER THIS IS FOR PHARMA STUDENTS, ACADEMICS, PROFESSIONL AND OST USEFUL FOR RESEARCHERS.
THANK YOU
HOPE YOU WILL LIKE AND SHARE
genetic engineering, principles, b pharma 6th sem, biotechnology
What is a gene ?
Definition
History
Process
Molecular tools of genetic engineering
Restriction enzymes
History of restriction enzyme
Mechanism of action
Types of restriction enzymes
Application of restriction enzymes
Blunt ends
Sticky ends
transgenic
cisgenic.
knockout organism.
Host organism vector
TRANSGENIC PLANTS
DOLLY THE SHIP
TRANSGENIC ANIMALS
Polypeptide antibiotics are a diverse class of natural antibiotics composed of amino acids joined by amide bonds. They are low molecular weight cationic polypeptides that act as powerful bactericidal agents against both gram-positive and gram-negative bacteria. Examples include gramicidin, bacitracin, polymyxin-B, and colistin. These antibiotics act by disrupting bacterial membranes through detergent-like and pseudophore formation mechanisms, leading to ion leakage and inactivation of endotoxins. In addition, chloramphenicol, vancomycin, and novobiocin are classified as miscellaneous antibiotics that have bactericidal properties through inhibition of protein synthesis or bacterial cell wall synthesis.
UNIT-1 Introduction to biotechnology and enzyme immobilisation Brief introduc...Shyam Bass
(6th Sem B.Pharma Pharmaceutical Biotechnology)
UNIT-1 Introduction to biotechnology and enzyme immobilization Brief introduction to biotechnology, Enzyme biotechnology- methods of enzyme immobilization and applications, biosensors- working and applications of biosensors in pharmaceutical industries
This document discusses enzyme biotechnology and methods of enzyme immobilization. It begins by defining enzymes and their function in cells. It then describes the different methods of immobilizing enzymes, including adsorption, covalent bonding, entrapment, cross-linking/copolymerization, and encapsulation. The advantages and disadvantages of each method are provided. Overall, the document provides an overview of enzyme biotechnology with a focus on immobilization techniques.
Enzyme definition, Enzyme immobilization introduction , Enzyme immobilization definition, Explanation about support/ matrix, Examples about immobilized enzymes and their product, Advantages of immobilization, Applications of immobilization, Methods of immobilization in different categories like Adsorption method, Covalent bonding method, Entrapment method, Co polymerization /Cross linking method, Encapsulation method, Applications of immobilized enzymes, Diagrammatic explanation about methods of immobilization.
This document discusses various applications of protein engineering in different industries and fields. It describes how protein engineering is used in the food industry to modify enzymes like proteases, amylases, and lipases to improve their properties. It also discusses applications in environmental remediation, medicine like cancer treatment, biopolymer production, nanobiotechnology, and redox proteins. The document provides an overview of the wide range of uses of protein engineering across diverse domains.
This document discusses metabolic engineering. Metabolic engineering modifies cellular properties through recombinant DNA technology to alter metabolic pathways for production of chemicals, fuels, pharmaceuticals and medicine. It requires overexpression or downregulation of proteins in pathways so cells produce new products. The first step is understanding the host cell environment for genetic modifications, and the effect of modifications on growth should be examined. Genetic manipulation may negatively impact metabolic burden. Metabolic engineering is used to produce various compounds through methods like eliminating competing pathways, expressing foreign enzymes, and optimizing cofactors like NAD+/NADH.
Protein engineering is a branch of biotechnology that modifies protein structure using genetic engineering techniques. The goals of protein engineering include developing proteins with useful functions for medicine, industry, and agriculture by making targeted changes to amino acids based on a protein's 3D structure. Common methods for protein engineering include site-directed mutagenesis and evolutionary methods involving random mutagenesis and selection. Proteome analysis studies all the proteins expressed by a genome at a given time using techniques like protein isolation, separation by SDS-PAGE or IEF, and identification through mass spectrometry.
4 . Brief introduction to protein engineering.pptxHarshadaa bafna
Protein engineering involves modifying protein structures using recombinant DNA technology or chemical treatment to achieve desired functions. It aims to develop useful proteins for applications in medicine, industry, and agriculture. Key techniques include rational design, site-directed mutagenesis to introduce specific amino acid changes, and chemical modification to alter functional groups or replace parts of proteins. The goal is to create proteins with increased stability, catalytic efficiency, and other improved properties for uses such as cancer treatment, producing therapeutic proteins, and applications in the food and detergent industries.
Utility of enzymes for the production of drugs 1 (1).pptxAnnie Annie
The document discusses the use of enzymes for drug synthesis. Enzymes are useful biocatalysts that can carry out reactions under mild conditions and with high selectivity and efficiency. This makes them preferable for producing drugs over conventional chemical methods. Some benefits of using enzymes include producing specific stereoisomers, working under mild pH and temperature conditions, and being derived from renewable resources. Examples are given of enzymes used in synthesizing various classes of drugs like antibiotics, antivirals, and anti-cancer agents.
This project report summarizes research conducted at the Central Science Laboratory (CSL) in the UK on assessing genetic variability and purifying bioactive proteins from oilseed rape (OSR) meal. The research was jointly funded by the European Commission and Home Grown Cereals Authority (HGCA) as part of a larger EU project involving 14 partners.
The studies at CSL showed that DNA fingerprinting, particularly microsatellite analysis, could be used to estimate genetic variability in protein composition among OSR varieties. Research also involved isolating and characterizing antifungal and proteinase inhibitor proteins from OSR meal that have potential applications in plant protection.
The overall EU project aimed to explore value-added uses for OS
Protein engineering is the process of designing new proteins or enzymes with desirable functions. It involves modifying amino acid sequences through methods like site-directed and random mutagenesis, as well as recombinant DNA technology. The goal is to produce proteins in large quantities, or create enzymes with improved properties like thermal stability, activity in non-aqueous solvents, or altered substrate binding. Protein engineering has applications in pharmaceuticals, food/detergent industries, environmental remediation, and other areas.
4th year class ppt bio.2014 final .pdfasmamawbelew
Here are the key points about immobilized enzymes:
- Enzymes are normally soluble in water, making it difficult to separate and reuse them in batch processes.
- Immobilization involves attaching or confining enzymes to an insoluble support or carrier material to localize them.
- This allows enzymes to be easily separated from reaction mixtures and reused multiple times.
- Common support materials include membranes, gels, polymers, and inorganic materials like silica.
- The method of immobilization depends on the support used but may involve adsorption, covalent binding, cross-linking, or entrapment.
- Immobilization can improve enzyme stability and allow continuous operation of biocataly
This document discusses the key concepts and goals of industrial microbiology and biotechnology. It explains that these fields involve using microorganisms to achieve specific aims, such as producing antibiotics, amino acids, organic acids, and other useful products. The document outlines various techniques for genetically manipulating microorganisms, preserving strains, growing microbes in controlled environments, and utilizing microbial communities in natural environments for applications like biodegradation. The overall aim is to discuss how microbes can be utilized and manipulated for industrial and biotechnological processes.
Protein Engineering.pptx Biotechnology classrakeshbarik8
Protein engineering involves modifying protein structure using recombinant DNA technology or chemical treatment to produce desirable functions. The objectives of protein engineering are to create superior enzymes for specific applications, produce enzymes and biological compounds in large quantities, and create compounds superior to natural ones. Protein engineering aims to alter properties like kinetic properties, thermostability, pH and temperature tolerance, substrate specificity, and molecular weight to optimize enzymes for industrial uses. Key methods for protein engineering include mutagenesis, gene modification using oligonucleotides or de novo gene synthesis, and chemical modification like PEG conjugation. Several proteins have been successfully engineered including insulin and cytochrome c.
This seminar discusses protein engineering, which modifies protein structure using recombinant DNA or chemical treatment. The objectives are to create superior enzymes for industrial chemical production and drugs. Proteins must be robust, stable under industrial conditions, and efficiently use non-natural substrates. Protein engineering aims to alter properties like kinetics, thermostability, pH and substrate optimization. It involves studying protein structures, using mutagenesis, selection and recombinant DNA to achieve desired functions.
Designing of drug delivery system for biotechnology products considering stab...Smaranika Rahman
"Where there is life, there is DNA, where there is DNA, there is biotechnology." Biotechnology, as the word suggests, is combination of biology and technology. So the importance of biotechnology and biotechnology products in our life is increasing day by day. That's why we have to produce biotechnology products in a safer manner and also maintain that through it's shelf-life.We have also research on improving methods of improving it's stability. In this topic, I also tried to discuss bioinformatic-driven strategies that are used to predict structural changes that can be applied to wild type proteins in order to produce more stable variants. The most commonly employed techniques PEGylation, stochastic approaches, empirical or systematic rational design strategies.
Drug delivery system for biotech product considering stability aspects and mo...zobaida mostarin nishi
Drug delivery is becoming a whole interdisciplinary and
an independent field of research and is gaining the attention of
pharmaceutical makers, medical doctors, and industry. A
targeted and safe drug delivery could improve the performance
of some classical medicines already on the market and,
moreover, will have implications for the development and
the success of new therapeutic strategies, such as peptide and
protein delivery, glycoprotein administration, gene therapy and
RNA interference.
Strain improvement in microbial genetics .pptxHamdiMichaelCC
Strain improvement involves manipulating microbial strains to enhance their metabolic capacities for biotechnology applications. Targets of strain improvement include rapid growth, genetic stability, non-toxicity, large cell size, ability to use cheaper substrates, increased productivity, and reduced cultivation costs. Traditional methods of strain improvement include mutagenesis, classical genetics, and rational selection. Modern techniques utilize genetic engineering and recombinant DNA technology to introduce desired mutations for traits like increased thermostability or altered substrate range.
This document discusses metabolic engineering and summarizes key points about manipulating metabolic pathways in organisms. Metabolic engineering involves genetically modifying organisms to modulate their metabolism and produce desired products. It can be done by directly manipulating genes encoding enzymes in pathways or indirectly altering regulatory pathways. The document outlines several approaches to metabolic engineering, including overexpressing rate-limiting enzymes, inhibiting competing pathways, and expressing heterologous genes from other organisms. It also summarizes applications of metabolic engineering for producing amino acids, antibiotics, and manipulating plant metabolism to create foods with improved nutrients or biofuel properties.
This document discusses the industrial production of recombinant therapeutics in Escherichia coli and its recent advancements. It notes that around 30% of approved recombinant proteins are produced in E. coli due to its well-characterized genetics and ability to rapidly produce high yields. Recent advancements include E. coli's increased ability to produce antibody fragments and the FDA's approval of antibody fragments produced in E. coli. The document also discusses considerations for recombinant protein expression in E. coli, including host strains, vectors, translation, secretion, fermentation processes, and scale up.
This document summarizes four research articles from the Office of Biological and Environmental Research.
The first article compares pretreatment processes using two ionic liquids to pretreat aspen and maple biomass for biofuel production. It finds one ionic liquid increased crystallinity while the other reduced it.
The second isolates five new Pseudomonas strains from soil that can metabolize pentose sugars, with genomes sequenced. This expands options for converting biomass into fuels and chemicals.
The third engineers poplar trees to produce less lignin using a bacterial enzyme, making the biomass easier to break down into sugars for biofuels. It reduces lignin by up to 30% while incorporating cleavable bonds into the lignin.
Meta-genomics is the application of modern genomics techniques to the study of communities of microbial organisms directly in their natural environments, bypassing the need for isolation and lab cultivation of individual species”
This document discusses protein engineering and the production of enzymes. It provides an overview of protein engineering, including its objectives and basic steps. Specific enzymes discussed include amylase, catalase, and lipase. The production processes for amylase and catalase are described. Microbes commonly used in industry such as Bacillus species are also mentioned for their role in producing enzymes like amylase, lipase, and proteases.
Similar to Objectives Of Protein Engineerihg BY Akash Das (20)
Anti-Universe And Emergent Gravity and the Dark UniverseSérgio Sacani
Recent theoretical progress indicates that spacetime and gravity emerge together from the entanglement structure of an underlying microscopic theory. These ideas are best understood in Anti-de Sitter space, where they rely on the area law for entanglement entropy. The extension to de Sitter space requires taking into account the entropy and temperature associated with the cosmological horizon. Using insights from string theory, black hole physics and quantum information theory we argue that the positive dark energy leads to a thermal volume law contribution to the entropy that overtakes the area law precisely at the cosmological horizon. Due to the competition between area and volume law entanglement the microscopic de Sitter states do not thermalise at sub-Hubble scales: they exhibit memory effects in the form of an entropy displacement caused by matter. The emergent laws of gravity contain an additional ‘dark’ gravitational force describing the ‘elastic’ response due to the entropy displacement. We derive an estimate of the strength of this extra force in terms of the baryonic mass, Newton’s constant and the Hubble acceleration scale a0 = cH0, and provide evidence for the fact that this additional ‘dark gravity force’ explains the observed phenomena in galaxies and clusters currently attributed to dark matter.
Microbial interaction
Microorganisms interacts with each other and can be physically associated with another organisms in a variety of ways.
One organism can be located on the surface of another organism as an ectobiont or located within another organism as endobiont.
Microbial interaction may be positive such as mutualism, proto-cooperation, commensalism or may be negative such as parasitism, predation or competition
Types of microbial interaction
Positive interaction: mutualism, proto-cooperation, commensalism
Negative interaction: Ammensalism (antagonism), parasitism, predation, competition
I. Mutualism:
It is defined as the relationship in which each organism in interaction gets benefits from association. It is an obligatory relationship in which mutualist and host are metabolically dependent on each other.
Mutualistic relationship is very specific where one member of association cannot be replaced by another species.
Mutualism require close physical contact between interacting organisms.
Relationship of mutualism allows organisms to exist in habitat that could not occupied by either species alone.
Mutualistic relationship between organisms allows them to act as a single organism.
Examples of mutualism:
i. Lichens:
Lichens are excellent example of mutualism.
They are the association of specific fungi and certain genus of algae. In lichen, fungal partner is called mycobiont and algal partner is called
II. Syntrophism:
It is an association in which the growth of one organism either depends on or improved by the substrate provided by another organism.
In syntrophism both organism in association gets benefits.
Compound A
Utilized by population 1
Compound B
Utilized by population 2
Compound C
utilized by both Population 1+2
Products
In this theoretical example of syntrophism, population 1 is able to utilize and metabolize compound A, forming compound B but cannot metabolize beyond compound B without co-operation of population 2. Population 2is unable to utilize compound A but it can metabolize compound B forming compound C. Then both population 1 and 2 are able to carry out metabolic reaction which leads to formation of end product that neither population could produce alone.
Examples of syntrophism:
i. Methanogenic ecosystem in sludge digester
Methane produced by methanogenic bacteria depends upon interspecies hydrogen transfer by other fermentative bacteria.
Anaerobic fermentative bacteria generate CO2 and H2 utilizing carbohydrates which is then utilized by methanogenic bacteria (Methanobacter) to produce methane.
ii. Lactobacillus arobinosus and Enterococcus faecalis:
In the minimal media, Lactobacillus arobinosus and Enterococcus faecalis are able to grow together but not alone.
The synergistic relationship between E. faecalis and L. arobinosus occurs in which E. faecalis require folic acid
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Leonel Morgado
Current descriptions of immersive learning cases are often difficult or impossible to compare. This is due to a myriad of different options on what details to include, which aspects are relevant, and on the descriptive approaches employed. Also, these aspects often combine very specific details with more general guidelines or indicate intents and rationales without clarifying their implementation. In this paper we provide a method to describe immersive learning cases that is structured to enable comparisons, yet flexible enough to allow researchers and practitioners to decide which aspects to include. This method leverages a taxonomy that classifies educational aspects at three levels (uses, practices, and strategies) and then utilizes two frameworks, the Immersive Learning Brain and the Immersion Cube, to enable a structured description and interpretation of immersive learning cases. The method is then demonstrated on a published immersive learning case on training for wind turbine maintenance using virtual reality. Applying the method results in a structured artifact, the Immersive Learning Case Sheet, that tags the case with its proximal uses, practices, and strategies, and refines the free text case description to ensure that matching details are included. This contribution is thus a case description method in support of future comparative research of immersive learning cases. We then discuss how the resulting description and interpretation can be leveraged to change immersion learning cases, by enriching them (considering low-effort changes or additions) or innovating (exploring more challenging avenues of transformation). The method holds significant promise to support better-grounded research in immersive learning.
Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...PsychoTech Services
A proprietary approach developed by bringing together the best of learning theories from Psychology, design principles from the world of visualization, and pedagogical methods from over a decade of training experience, that enables you to: Learn better, faster!
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...Scintica Instrumentation
Targeting Hsp90 and its pathogen Orthologs with Tethered Inhibitors as a Diagnostic and Therapeutic Strategy for cancer and infectious diseases with Dr. Timothy Haystead.
Authoring a personal GPT for your research and practice: How we created the Q...Leonel Morgado
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...Sérgio Sacani
Context. With a mass exceeding several 104 M⊙ and a rich and dense population of massive stars, supermassive young star clusters
represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions
among stars.
Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate
the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars.
The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun.
Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically,
the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec.
Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within
and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation
were carried out using the ACIS-Extract software.
Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a
photon flux threshold of approximately 2 × 10−8 photons cm−2
s
−1
. The X-ray sources exhibit a highly concentrated spatial distribution,
with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known
massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217.
Discovery of An Apparent Red, High-Velocity Type Ia Supernova at 𝐳 = 2.9 wi...Sérgio Sacani
We present the JWST discovery of SN 2023adsy, a transient object located in a host galaxy JADES-GS
+
53.13485
−
27.82088
with a host spectroscopic redshift of
2.903
±
0.007
. The transient was identified in deep James Webb Space Telescope (JWST)/NIRCam imaging from the JWST Advanced Deep Extragalactic Survey (JADES) program. Photometric and spectroscopic followup with NIRCam and NIRSpec, respectively, confirm the redshift and yield UV-NIR light-curve, NIR color, and spectroscopic information all consistent with a Type Ia classification. Despite its classification as a likely SN Ia, SN 2023adsy is both fairly red (
�
(
�
−
�
)
∼
0.9
) despite a host galaxy with low-extinction and has a high Ca II velocity (
19
,
000
±
2
,
000
km/s) compared to the general population of SNe Ia. While these characteristics are consistent with some Ca-rich SNe Ia, particularly SN 2016hnk, SN 2023adsy is intrinsically brighter than the low-
�
Ca-rich population. Although such an object is too red for any low-
�
cosmological sample, we apply a fiducial standardization approach to SN 2023adsy and find that the SN 2023adsy luminosity distance measurement is in excellent agreement (
≲
1
�
) with
Λ
CDM. Therefore unlike low-
�
Ca-rich SNe Ia, SN 2023adsy is standardizable and gives no indication that SN Ia standardized luminosities change significantly with redshift. A larger sample of distant SNe Ia is required to determine if SN Ia population characteristics at high-
�
truly diverge from their low-
�
counterparts, and to confirm that standardized luminosities nevertheless remain constant with redshift.
Discovery of An Apparent Red, High-Velocity Type Ia Supernova at 𝐳 = 2.9 wi...
Objectives Of Protein Engineerihg BY Akash Das
1. Objectives Of Protein Engineering
With Examples
By, Suman Kr Bhunia (BWU/BRI/19/002)
Arghya Patra (BWU/BRI/19/004)
Akash Das (BWU/BRI/19/005)
Paper Code- GEBT-301
2. Protein engineering can be defined as the
modification of protein structure with
recombinant DNA technology or chemical
treatment to get a desirable function for better
use in medicine, industry and agriculture.
Fig- 1: Image of Simple Illustration of Protein Engineering
3. There are many importance of protein engineering
like-
a) Protein Engineering is important to create a
superior enzyme to catalyze the production of high
value specific chemicals.
b) It is also important to produce enzyme in large
quantities.
c) In case of production of biological compounds
(include synthetic peptide, storage protein, and
synthetic drugs) superior to natural one, protein
engineering have an important role.
4. There are many techniques of protein engineering like-
Name Of The Techniques Of Protein Engineering
01. Rational design
02. Site-directed mutagenesis
03. Evolutionary methods/directed Evolution
04. Random mutagenesis
05. DNA shuffling
06. Molecular dynamics
07. Homology modeling
08. Computational methods
09. Designed divergent evolution
10. Mechanical engineering of elastomeric proteins
5. • The use of protein engineering for cancer treatment studies
is a major area of interest. Pretargeted
radioimmunotherapy has been discussed as a potential
cancer treatment.
• The use of novel antibodies as anticancer agents is also an
important field of application and protein engineering
methods are used to modify antibodies to target cancer cells
for clinical applications.
Fig- 2: Image of Explanation of Pretargeted Radioimmunotherapy
6. • Pharmacokinetic properties of antibodies have been
improved by protein engineering and antibody variants
of different size and antigen binding sites have been
produced for the ultimate use as imaging probes
specific to target tissues.
• Molecular imaging tools based on antibodies will find
more applications in the future regarding diagnosis and
treatment of cancer and other complex diseases.
Fig- 3: Explanation of Molecular Imaging
7. • Important application area of protein engineering
regarding food industry is the wheat gluten proteins.
Their heterologous expression and protein
engineering has been studied using a variety Of
expression systems, such as E.coli, veasts or
cultured insect cells.
Fig- 4: Image of bread Fig- 5: Image of chesse
8. • Food industry makes use of a variety of food-
processing enzymes, such as amylases and lipases,
the properties of which are improved using recombinant
DNA technology and protein engineering. The deletion
of native genes encoding extracellular proteases, for
example, increased enzyme production yields of
microbial hosts.
• Some large groups of enzymes like Proteases,
Amylases and Lipases are important for food as they
have a broad range of industrial applications.
• Proteases are used in several applications of food
industry regarding low allergenic infant formulas, milk
clotting and flavors. Lipases are used in many
applications of food industry like in cheese flavoring
applications.
9. • Applications For Biopolymer Production Industry:
Protein engineering applications for biopolymer
production are also promising. Particularly, peptides are
becoming increasingly important as biomaterials because
of their specific physical, chemical and biological
properties.
There are many uses in commercial industry of protein engineering
like-
Fig- 6: Image of Preparation of Biopolymer
10. • Applications For Nanobiotech Industry:
Nanobiotechnology applications of protein engineering are becoming
increasingly important. The synthesis and assembly of
nanotechnological systems into functional structures and devices has
been difficult and limiting their potential applications for a long time.
• Applications For Redox Proteins And Enzymes Industry:
Improvement of redox proteins and enzymes by protein engineering
is also an important application field. Such proteins and enzymes can
be modified to be used in nanodevices for nanobiotechnology
applications.
Fig- 7: Image of Explanation of Nanoboitech Fig- 8: Image of Redox Proteins
11. • Environmental applications of enzyme and protein engineering are
also another important field.
• Genetic methods and strategies for designing microorganisms to
eliminate environmental pollutants and included gene expression
regulation to provide high catalytic activity under environmental
stress conditions, such as the presence of a toxic compound, rational
changes introduced in regulatory proteins that control catabolic
activities, creation of new metabolic routes and combinations.
• Many organic pollutants such as phenols, azo dyes ,
organophosphorus pesticides and polycyclic aromatic hydrocarbons
can be detoxified using enzymatic oxidation.
Fig- 9: Images of G.M Bacteria
12. • Thermostability :
Several structural parameters contribute to the
thermostability of a lipase, primarily polarity of enzyme
surfaces such as the lid domain. Since there are many
candidate amino acid sites for possible mutations, as
compared to rational design, directed evolution is
generally more efficient in exploring all potential mutants.
Specific examples of how various protein engineering
techniques has been used to improve thermostability, organic
solvent stability and substrate specificity of lipases-
Fig- 10: Enhancing The Thermostability Of Rhizopus Oryzae Lipase
13. • Stability in Organic Solvent:
Most hydrophilic and hydrophobic residues face towards
the core and the surface, respectively, a change in surface
hydrophobicity would influence lipase contact with
solvents. Therefore, modifications of surface residues of
lipases, particularly in the loop region, can lead to
improved enzyme stability in organic solvents. For this,
similar to the case of thermostability, it appears that
directed evolution may be more efficient than the rational
design method.
• Catalytic Activity and Substrate Specificity:
Designing regions of lid and substrate-binding site has
proven to be effective to modify the activity of lipase,
suggesting that site-directed mutagenesis method is an
efficient approach.