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January 1, 2012
     Letizia Mancino




                       Heidelberg           Jackson Lab                Mainz


                              Optics beyond the Abbe Limit:
                                    “Molecular Constellations“
                                                      C. Cremer
                                    Institute of Molecular Biology (IMB), Mainz/DE
Institut for Pharmacy & Molecular Biotechnology; Kirchhoff-Institute of Physics,
     University Heidelberg; Institute for Molecular Biophysics, The Jackson
                               Laboratory,ME/USA
                                    For more information see www.imb-mainz.de
Conventional Resolution           Localization Microscopy            From:
                                                                     C. Cremer et al.,
                                                                     Biotechnology J.
                                                                     6 (2011)




                     200 nm___


                                                                     From:
                                      All scale bars 500 nm          Y. Markaki et al.,
                                                                     CSH Symposia
                                                                     75 (2011)




                    100 nm

Above: Viruses; Below: 2 Protein types within a human cell nucleus. The crosses/circles
denote positions of single molecules (exciting wavelength 488 nm)
Principle of Spectrally Assigned Localization Microscopy
(SPDM): Optical Isolation of Diffraction Images of individual
Molecules: Determination of Gravity Centers

                                       3 point-like objects in x,y plane with
                                           next neigbour distances 50 nm
                                       a) Labelling with same spectral
                                          signature
                                       b)   Labeling with different unique
                                            spectral signatures B,G,R
                                       Computation (scalar Theory):
                                       NA = 1.4, λexc = 488 nm
                                       Optical Isolation by the
                                       “Supernova“ Mode: Induction of
                                       stochastically distributed short
                                       flashes of light emission by
Cremer et al. 1996, 1999, 2010, 2011   individual molecules
Present State of Superresolution Far Field Light Microscopy
realized @ C. Cremer Lab (December 2011)

- Optical Resolution OR (resolvable distance):
 OR ~ 5 nm (~ 1/100 λexc, from localization precision)
- Structural Resolution (imaging capability):
● Mean (2D) distance between individual molecules actually
detected: ~ 6 nm ( ~ 1/80 λexc)
● Density of individually detected Molecules : ~ 2,8 · 104/µm2
- Multicolor- Localization Microscopy:
● 2 – 3 different molecules types
● 3D single Molecule Resolution inside cells (best values): 3D
Observation Volume about 1*104 times smaller (i.e. 3D
resolution 104 times better) than in conventional Light
Microscopy (“Abbe-limit”)
Some recent references:
C. Cremer, Optics far Beyond the Diffraction Limit: From Focused Nanoscopy to
Spectrally Assigned Localization Microscopy. Springer Handbook of Lasers and Optics,
2nd edition (F. Träger, Edit.), in press.


Y. Markaki et al. (2011) Functional nuclear organization of transcription and DNA
replication: a topographical marriage between chromatin domains and the interchromatin
compartment. Cold Spring Harbor Symposia on Quantitative Biology 75: 1–18.
doi:10.1101/sqb.2010.75.042.

R. Kaufmann et al. (2011) Analysis of Her2/neu membrane protein clusters in breast
cancer cells using localisation microscopy. J. of Microscopy 242: 46–54.

G. Best et al. (2011) Structured illumination microscopy of autofluorescent aggregations
in human tissue. Micron 42: 330–335.

C. Cremer et al. (2011) Superresolution imaging of biological nanostructures by spectral
precision distance microscopy, Biotechnology 6: 1037–1051.

C. Cremer (2011) Lichtmikroskopie unterhalb des Abbe-Limits, Physik in Unserer Zeit 42:
21 – 29.

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Optics beyond the Abbe Limit

  • 1. January 1, 2012 Letizia Mancino Heidelberg Jackson Lab Mainz Optics beyond the Abbe Limit: “Molecular Constellations“ C. Cremer Institute of Molecular Biology (IMB), Mainz/DE Institut for Pharmacy & Molecular Biotechnology; Kirchhoff-Institute of Physics, University Heidelberg; Institute for Molecular Biophysics, The Jackson Laboratory,ME/USA For more information see www.imb-mainz.de
  • 2. Conventional Resolution Localization Microscopy From: C. Cremer et al., Biotechnology J. 6 (2011) 200 nm___ From: All scale bars 500 nm Y. Markaki et al., CSH Symposia 75 (2011) 100 nm Above: Viruses; Below: 2 Protein types within a human cell nucleus. The crosses/circles denote positions of single molecules (exciting wavelength 488 nm)
  • 3. Principle of Spectrally Assigned Localization Microscopy (SPDM): Optical Isolation of Diffraction Images of individual Molecules: Determination of Gravity Centers 3 point-like objects in x,y plane with next neigbour distances 50 nm a) Labelling with same spectral signature b) Labeling with different unique spectral signatures B,G,R Computation (scalar Theory): NA = 1.4, λexc = 488 nm Optical Isolation by the “Supernova“ Mode: Induction of stochastically distributed short flashes of light emission by Cremer et al. 1996, 1999, 2010, 2011 individual molecules
  • 4. Present State of Superresolution Far Field Light Microscopy realized @ C. Cremer Lab (December 2011) - Optical Resolution OR (resolvable distance): OR ~ 5 nm (~ 1/100 λexc, from localization precision) - Structural Resolution (imaging capability): ● Mean (2D) distance between individual molecules actually detected: ~ 6 nm ( ~ 1/80 λexc) ● Density of individually detected Molecules : ~ 2,8 · 104/µm2 - Multicolor- Localization Microscopy: ● 2 – 3 different molecules types ● 3D single Molecule Resolution inside cells (best values): 3D Observation Volume about 1*104 times smaller (i.e. 3D resolution 104 times better) than in conventional Light Microscopy (“Abbe-limit”)
  • 5. Some recent references: C. Cremer, Optics far Beyond the Diffraction Limit: From Focused Nanoscopy to Spectrally Assigned Localization Microscopy. Springer Handbook of Lasers and Optics, 2nd edition (F. Träger, Edit.), in press. Y. Markaki et al. (2011) Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. Cold Spring Harbor Symposia on Quantitative Biology 75: 1–18. doi:10.1101/sqb.2010.75.042. R. Kaufmann et al. (2011) Analysis of Her2/neu membrane protein clusters in breast cancer cells using localisation microscopy. J. of Microscopy 242: 46–54. G. Best et al. (2011) Structured illumination microscopy of autofluorescent aggregations in human tissue. Micron 42: 330–335. C. Cremer et al. (2011) Superresolution imaging of biological nanostructures by spectral precision distance microscopy, Biotechnology 6: 1037–1051. C. Cremer (2011) Lichtmikroskopie unterhalb des Abbe-Limits, Physik in Unserer Zeit 42: 21 – 29.