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k-space Diagonal Preconditioner:
Speeding Up Iterative Reconstruction For Variable
Density Sampled Acquisitions Without Compromises
Frank Ong, Martin Uecker, and Michael Lustig
Speaker Name: Frank Ong
I have the following financial interest or relationship to disclose with regard to the subject
matter of this presentation:
Company Name: GE Healthcare
Type of Relationship: Research support
Declaration of
Financial Interests or Relationships
Variable Density Sampling [1]
• Enables auto-calibration parallel imaging
• Robust to motion by averaging in low frequency
Ref: [1] Tsai and Nishimura, MRM 2000
Challenge for Iterative Reconstruction
2D UTE radial compressed sensing recon.
• Takes many iterations to converge
• Blurring when not converged
• Goal: accelerate iterative recon.
convergence for variable density sampling
Iterative Reconstruction
• For each iteration n, we compute:
Image
Non-Cartesian SENSE
k-space signal
Regularization
Condition number determines convergence
• For variable density sampling, condition number is high, hence slow
convergence
Density Compensation in Iterative Recon.
• Empirically shown to accelerate convergence [5]
• Computationally simple and fast
• Sacrifices SNR for convergence [5-6]:
[1] Jackson et al., MRM 1991 [2] Meyer et al., MRM 1992 [3] Hoge et al., MRM 1997 [4] Pipe and Menon, MRM 1999, [5] Pruessmann et al., MRM 2001 [6] Sutton et al, TMI 2003
Density Compensation Operator
• Leverages density compensation in gridding recon. [1-4]
Preconditioning
• No SNR penalty and preserves objective function
• Advocated by many works [1-4]
• Theoretically and empirically shown to accelerate iterative convergence
• Need additional FFTs to compensate variable density in k-space
• Requires inner loops to incorporate preconditioner in regularization
Improved condition number
[1] Sutton et al, TMI 2003 [2] Ramani et al., TMI 2011 [3] Weller et al., TMI 2014 [4] Muckley et al., ISMRM 2016 p0521
• Need additional FFTs to compensate variable density in k-space
• Requires inner loops to incorporate preconditioner in regularization
Preconditioning
Improved condition number
Overall increases computational complexity
[1] Sutton et al, TMI 2003 [2] Ramani et al., TMI 2011 [3] Weller et al., TMI 2014 [4] Muckley et al., ISMRM 2016 p0521
• No SNR penalty and preserves objective function
• Advocated by many works [1-4]
• Theoretically and empirically shown to accelerate iterative convergence
Desired: k-space Preconditioning
Our contribution:
• Present a general k-space preconditioning method without inner loops using PDHG [2-3]
• Derive an L2-optimized k-space diagonal preconditioner
• Demonstrate in experiments convergence in ~10 iterations
[1] Trzasko et al., ISMRM 2014 p1535 [2] Chambolle and Pock, J Math Imaging Vis 2011 [3] Pock and Chambolle, ICCV 2011
Existing work:
• Recently Trzasko et al. [1] shows a k-space preconditioning method, but with inner
loops and off-the-shelf density compensation factor as preconditioner
Want computation efficiency of density compensation and SNR of preconditioning
k-space Preconditioning Formulation
[1] Boyd and Vandenberghe, Convex Optimization
Key observations:
• Dual variable lives in k-space
• Can precondition dual problem with density-compensation like operations!
Primal
Dual [1]
k-space Preconditioning Formulation
• Primal-dual hybrid gradient [1-2] solves the primal and dual problems together:
• Same per-iteration computational complexity as vanilla iterative recon.
• Can precondition in k-space to accelerate convergence
[1] Chambolle and Pock, J Math Imaging Vis 2011 [2] Pock and Chambolle, ICCV 2011
• We consider an L2-optimized diagonal preconditioner, a
commonly used design for preconditioners [1]:
L2-Optimized k-space Diagonal Preconditioner
[1] Chan SIAM J. Sci. And Stat. Comput. 1988
• Preconditioner calculation incorporates sensitivity maps
• Different from density compensation, each channel has different preconditioner
• Providing more degrees of freedom
L2-Optimized k-space Diagonal Preconditioner
Preconditioner of 2D variable density spiral trajectory with 8-channel sensitivity maps
Readout sample numbersLow frequency High frequency
FISTA [1] Primal-dual Hybrid Gradient [2]
Primal-dual Hybrid Gradient
w/ Proposed Precond.
L1-Wavelet Recon. Of 2D Variable Density Spiral
[1] Beck and Teboulle SIAM J Imaging Sciences 2009 [2] Chambolle and Pock, J Math Imaging Vis 2011
FISTA [1] Primal-dual Hybrid Gradient [2]
Primal-dual Hybrid Gradient
w/ Proposed Precond.
L1-Wavelet Recon. Of 2D Variable Density Spiral
[1] Beck and Teboulle SIAM J Imaging Sciences 2009 [2] Chambolle and Pock, J Math Imaging Vis 2011
FISTA Primal-dual Hybrid Gradient
Primal-dual Hybrid Gradient
w/ Proposed Precond.
L1-Wavelet Recon. Of 2D UTE Radial
FISTA Primal-dual Hybrid Gradient
Primal-dual Hybrid Gradient
w/ Proposed Precond.
L1-Wavelet Recon. Of 2D UTE Radial
Conclusion
• Accelerate iterative recon. convergence without:
• SNR penalty of density compensation
• Increased computations of existing preconditioners
• L2-optimized k-space diagonal preconditioner
• Different for each channel
• Experiments shows convergence at ~10 iterations

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General Phase Regularized MRI Reconstruction Using Phase Cycling

  • 1. k-space Diagonal Preconditioner: Speeding Up Iterative Reconstruction For Variable Density Sampled Acquisitions Without Compromises Frank Ong, Martin Uecker, and Michael Lustig
  • 2. Speaker Name: Frank Ong I have the following financial interest or relationship to disclose with regard to the subject matter of this presentation: Company Name: GE Healthcare Type of Relationship: Research support Declaration of Financial Interests or Relationships
  • 3. Variable Density Sampling [1] • Enables auto-calibration parallel imaging • Robust to motion by averaging in low frequency Ref: [1] Tsai and Nishimura, MRM 2000
  • 4. Challenge for Iterative Reconstruction 2D UTE radial compressed sensing recon. • Takes many iterations to converge • Blurring when not converged • Goal: accelerate iterative recon. convergence for variable density sampling
  • 5. Iterative Reconstruction • For each iteration n, we compute: Image Non-Cartesian SENSE k-space signal Regularization Condition number determines convergence • For variable density sampling, condition number is high, hence slow convergence
  • 6. Density Compensation in Iterative Recon. • Empirically shown to accelerate convergence [5] • Computationally simple and fast • Sacrifices SNR for convergence [5-6]: [1] Jackson et al., MRM 1991 [2] Meyer et al., MRM 1992 [3] Hoge et al., MRM 1997 [4] Pipe and Menon, MRM 1999, [5] Pruessmann et al., MRM 2001 [6] Sutton et al, TMI 2003 Density Compensation Operator • Leverages density compensation in gridding recon. [1-4]
  • 7. Preconditioning • No SNR penalty and preserves objective function • Advocated by many works [1-4] • Theoretically and empirically shown to accelerate iterative convergence • Need additional FFTs to compensate variable density in k-space • Requires inner loops to incorporate preconditioner in regularization Improved condition number [1] Sutton et al, TMI 2003 [2] Ramani et al., TMI 2011 [3] Weller et al., TMI 2014 [4] Muckley et al., ISMRM 2016 p0521
  • 8. • Need additional FFTs to compensate variable density in k-space • Requires inner loops to incorporate preconditioner in regularization Preconditioning Improved condition number Overall increases computational complexity [1] Sutton et al, TMI 2003 [2] Ramani et al., TMI 2011 [3] Weller et al., TMI 2014 [4] Muckley et al., ISMRM 2016 p0521 • No SNR penalty and preserves objective function • Advocated by many works [1-4] • Theoretically and empirically shown to accelerate iterative convergence
  • 9. Desired: k-space Preconditioning Our contribution: • Present a general k-space preconditioning method without inner loops using PDHG [2-3] • Derive an L2-optimized k-space diagonal preconditioner • Demonstrate in experiments convergence in ~10 iterations [1] Trzasko et al., ISMRM 2014 p1535 [2] Chambolle and Pock, J Math Imaging Vis 2011 [3] Pock and Chambolle, ICCV 2011 Existing work: • Recently Trzasko et al. [1] shows a k-space preconditioning method, but with inner loops and off-the-shelf density compensation factor as preconditioner Want computation efficiency of density compensation and SNR of preconditioning
  • 10. k-space Preconditioning Formulation [1] Boyd and Vandenberghe, Convex Optimization Key observations: • Dual variable lives in k-space • Can precondition dual problem with density-compensation like operations! Primal Dual [1]
  • 11. k-space Preconditioning Formulation • Primal-dual hybrid gradient [1-2] solves the primal and dual problems together: • Same per-iteration computational complexity as vanilla iterative recon. • Can precondition in k-space to accelerate convergence [1] Chambolle and Pock, J Math Imaging Vis 2011 [2] Pock and Chambolle, ICCV 2011
  • 12. • We consider an L2-optimized diagonal preconditioner, a commonly used design for preconditioners [1]: L2-Optimized k-space Diagonal Preconditioner [1] Chan SIAM J. Sci. And Stat. Comput. 1988
  • 13. • Preconditioner calculation incorporates sensitivity maps • Different from density compensation, each channel has different preconditioner • Providing more degrees of freedom L2-Optimized k-space Diagonal Preconditioner Preconditioner of 2D variable density spiral trajectory with 8-channel sensitivity maps Readout sample numbersLow frequency High frequency
  • 14. FISTA [1] Primal-dual Hybrid Gradient [2] Primal-dual Hybrid Gradient w/ Proposed Precond. L1-Wavelet Recon. Of 2D Variable Density Spiral [1] Beck and Teboulle SIAM J Imaging Sciences 2009 [2] Chambolle and Pock, J Math Imaging Vis 2011
  • 15. FISTA [1] Primal-dual Hybrid Gradient [2] Primal-dual Hybrid Gradient w/ Proposed Precond. L1-Wavelet Recon. Of 2D Variable Density Spiral [1] Beck and Teboulle SIAM J Imaging Sciences 2009 [2] Chambolle and Pock, J Math Imaging Vis 2011
  • 16. FISTA Primal-dual Hybrid Gradient Primal-dual Hybrid Gradient w/ Proposed Precond. L1-Wavelet Recon. Of 2D UTE Radial
  • 17. FISTA Primal-dual Hybrid Gradient Primal-dual Hybrid Gradient w/ Proposed Precond. L1-Wavelet Recon. Of 2D UTE Radial
  • 18. Conclusion • Accelerate iterative recon. convergence without: • SNR penalty of density compensation • Increased computations of existing preconditioners • L2-optimized k-space diagonal preconditioner • Different for each channel • Experiments shows convergence at ~10 iterations

Editor's Notes

  1. Variable density sampling is now commonly used in advanced Magnetic Resonance Imaging (MRI) methods. Most non-Cartesian Such sampling methods are robust to motion and enable the use of auto-calibration parallel imaging. Since natural images often have signals concentrated in low frequency, variable density sampling is also more adaptive to signal energy than uniform sampling, and is often used in compressed sensing MRI [4].
  2. On the other hand, iterative reconstruction from variable density sampling takes more iterations to converge compared to its uniform sampling counterpart. This is due to ill conditioning of the reconstruction problem, which often appear as image blurring. Shows the iteration progression fo a variable density reconstruction
  3. Concretely, we consider the following objective function for reconstruction:
  4. One common heuristic to compensate for the blurring in iterative reconstruction for non-Cartesian imaging is density compensation [5], which multiplies k-space samples with a density compensation factor. While this produces sharp images, it is known to increase reconstruction error, as densely sampled region is weighted down in data consistency.
  5. Preconditioners have the advantage of preserving the original objective function, and hence do not affect the reconstruction accuracy. However, most existing preconditioners [6]– [9] appear in the form of image convolution, which requires two additional fast Fourier transforms per iteration. Moreover, all of these works resulted in algorithms that require inner loops for non-Cartesian imaging, which further lengthen reconstruction time.
  6. Preconditioners have the advantage of preserving the original objective function, and hence do not affect the reconstruction accuracy. However, most existing preconditioners [6]– [9] appear in the form of image convolution, which requires two additional fast Fourier transforms per iteration. Moreover, all of these works resulted in algorithms that require inner loops for non-Cartesian imaging, which further lengthen reconstruction time.