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COVID-19: Biology, Transmission, and Detection
Bio-Rad Laboratories
April 16, 2020
2
Basic Biology of COVID-19
โ€ข Coronavirus
โ€ข Family of viruses that attack respiratory system in humans
โ€ข Often grouped into what is commonly called cold viruses
โ€ข Positive sense single stranded RNA genome of 29,891 nucleotides (1)
โ€ข 0.125 ฮผm in diameter (2)
โ€ข Major Structural Proteins:
o Spike Glycoprotein (S-Protein)
o Interacts with ACE2 for entry into host cell
o Membrane protein (M-Protein)
o Viral assembly and membrane curvature
o Envelope protein (E-Protein)
o Assembly, budding, envelope formation
o Nucleocapsid protein (N-Protein)
o RNA-binding protein
o Hemagglutin-esterase (HE)
o Assists in the S-protein-mediated entry into host cells.
3
ACE2
TMPRSS2
How does SARS-CoV-2 Infect Cells?
4
Spike Protein
ACE2
TMPRSS2
How does SARS-CoV-2 Infect Cells?
5
How does SARS-CoV-2 Infect Cells?
6
How does SARS-CoV-2 Infect Cells?
7
ACE2: A Double-Edged Sword
8
COVID-19 Disease Transmission
9
How do we Test for COVID-19?
10
Step 1: Sample Collection
Throat Swab
oropharyngeal
Nasal
Mid-turbinate
Anterior nares
nasopharyngeal
Real-Time PCR
11
Step 2: Preparing Sample for Detection
Get RNA from virus (RNA Extraction Kit)
Patient Sample
Lyse Bind Wash Elute
Sds
Proteinase K
Alcohol
+charged
surface
Alcohol Water
Or
12
RT-rtPCR - 2-3 hours
Reverse Transcriptase - real time Polymerase Chain
Reaction
1) Convert RNA to DNA using Reverse Transcriptase
13
Serology Testing
โ€ข Blood-based
Immunoassay Kits
โ€ข Tests blood, plasma
or serum samples
from patients to see
whether the body has
developed the
antibodies to fight the
virus.
โ€ข Can identify whether
an individual has been
exposed to Covid-19.
Image credit- shuttershock.com
14
How do Serology Tests Work?
โ— Real-time PCR tests indicate the presence of viral
material during infection.
โ— Serology tests indicate whether a person was infected
and recovered.
There are 3 types of Serology Tests:
โ— Rapid diagnostic test (RDT):
๏‚ง Qualitative. Similar to pregnancy test.
โ— Enzyme-linked immunosorbent assay (ELISA):
๏‚ง Qualitative or quantitative. Uses a plate coated with viral
protein of interest.
15
Serology Kits Coming Soon!
โ— Bio-Rad and many other Biotech companies are currently in
the process of developing a serology test to identify the
antibodies to Covid-19!
โ— These kits will allow further investigations into the outbreak
as well as Covid-19โ€™s attack rate.
โ— These tests are key to understanding Covid-19 and getting
back to normal!

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COVID-19: Biology, Transmission, and Detection

  • 1. 1 COVID-19: Biology, Transmission, and Detection Bio-Rad Laboratories April 16, 2020
  • 2. 2 Basic Biology of COVID-19 โ€ข Coronavirus โ€ข Family of viruses that attack respiratory system in humans โ€ข Often grouped into what is commonly called cold viruses โ€ข Positive sense single stranded RNA genome of 29,891 nucleotides (1) โ€ข 0.125 ฮผm in diameter (2) โ€ข Major Structural Proteins: o Spike Glycoprotein (S-Protein) o Interacts with ACE2 for entry into host cell o Membrane protein (M-Protein) o Viral assembly and membrane curvature o Envelope protein (E-Protein) o Assembly, budding, envelope formation o Nucleocapsid protein (N-Protein) o RNA-binding protein o Hemagglutin-esterase (HE) o Assists in the S-protein-mediated entry into host cells.
  • 4. 4 Spike Protein ACE2 TMPRSS2 How does SARS-CoV-2 Infect Cells?
  • 5. 5 How does SARS-CoV-2 Infect Cells?
  • 6. 6 How does SARS-CoV-2 Infect Cells?
  • 9. 9 How do we Test for COVID-19?
  • 10. 10 Step 1: Sample Collection Throat Swab oropharyngeal Nasal Mid-turbinate Anterior nares nasopharyngeal Real-Time PCR
  • 11. 11 Step 2: Preparing Sample for Detection Get RNA from virus (RNA Extraction Kit) Patient Sample Lyse Bind Wash Elute Sds Proteinase K Alcohol +charged surface Alcohol Water Or
  • 12. 12 RT-rtPCR - 2-3 hours Reverse Transcriptase - real time Polymerase Chain Reaction 1) Convert RNA to DNA using Reverse Transcriptase
  • 13. 13 Serology Testing โ€ข Blood-based Immunoassay Kits โ€ข Tests blood, plasma or serum samples from patients to see whether the body has developed the antibodies to fight the virus. โ€ข Can identify whether an individual has been exposed to Covid-19. Image credit- shuttershock.com
  • 14. 14 How do Serology Tests Work? โ— Real-time PCR tests indicate the presence of viral material during infection. โ— Serology tests indicate whether a person was infected and recovered. There are 3 types of Serology Tests: โ— Rapid diagnostic test (RDT): ๏‚ง Qualitative. Similar to pregnancy test. โ— Enzyme-linked immunosorbent assay (ELISA): ๏‚ง Qualitative or quantitative. Uses a plate coated with viral protein of interest.
  • 15. 15 Serology Kits Coming Soon! โ— Bio-Rad and many other Biotech companies are currently in the process of developing a serology test to identify the antibodies to Covid-19! โ— These kits will allow further investigations into the outbreak as well as Covid-19โ€™s attack rate. โ— These tests are key to understanding Covid-19 and getting back to normal!