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Control of plant diseases
Amit Kumar Sahoo
II MSc Biosciences
15151
1
Breeding resistant varieties,
Control through protection(chemicals and environmental manipulation),
Legislation (Quarantine and regulatory measures),
Eradication.
What is a Plant disease?
Plant disease, an impairment of the normal state of a plant
that interrupts or modifies its vital functions.
2
The Big Picture
 Main purpose behind understanding pathogens and the diseases
they cause is so diseases can be controlled.
 For most crops, the goal is to save most of the plant population,
not selected individuals.
 Purpose of disease control is to prevent disease from exceeding
some level where profit or yield is significantly diminished.
3
Amit Kumar Sahoo
Plant Disease Triangle
4Host
Total Of all properties that affect susceptibility
Pathogen
Total of all properties of pathogen
(virulence, abundance, etc.)
Environment
Total of all conditions
That affect disease
 All three factors are necessary components of disease
 Area of triangle represents amount of disease
Amit Kumar Sahoo
Vanderplank’s Equivalence
Theorem
 Effects of host, pathogen and environment can be translated into
terms of the rate parameter of an epidemic.
 Changes in any component have an equivalent effect on disease.
 More-less susceptible host
 More-less aggressive pathogen
 More-less favorable environment
All affect amount of disease
5
Amit Kumar Sahoo
Disease Cycles 6
Survival Inoculation
Penetration
Infection
Disease
Pathogen
reduction
Dispersal
• Pathogens all go through a cycle with similar events.
• Knowing how particular pathogen go through their cycle is important
in developing management strategies.
Amit Kumar Sahoo
Basic principles of disease control:
Control strategies can be divided into two groups based on their effect on the
development of resistance to the control measure by the pathogen:
1. Eradicative control measures — designed to eliminate the entire pathogen
population - examples: pesticides, vertical or complete resistance - These tend
to select for resistant variants of the pathogen. Why? All individuals are
affected, so the pathogen must adapt or die.
2. Management control measures — designed to reduce the pathogen
population by destroying a portion of the population - examples: horizontal
or partial resistance, antagonism, cultural practices, quarantine - These do not
apply heavy selection pressure to the pathogen. Why? Portions of the
pathogen population remain unaffected, no pressure to adapt.
* Of the two, we prefer to use management strategies.
7
Amit Kumar Sahoo
Disease control
There are four basic types of control measures:
a. Biological control
b. Cultural control (includes physical control)
c. Legislative and regulatory control
d. Chemical control
8
Amit Kumar Sahoo
Biological control-I
Manipulation of biotic entities; host and antagonistic
microorganisms
1. Host resistance - control based on the genes and the
resistance mechanisms they control
a. Van der Plank described two types of resistance
(1960s; these are the "classics‘’):
i. Vertical resistance — resistance that is effective
against some, but not all, races of a pathogen; decreases the
effective amount of incoming inoculum (avirulent races can't
infect), but does not reduce the rate of disease development
(virulent races are not affected)
ii.Horizontal resistance — resistance that is effective against
all races of the pathogen; decreases the rate of disease
development for all races
9
10
11
Biological control-II
b. Resistance has been defined in many other ways since Van der
Plank, including systems based on: epidemiologic effects,
number of genes involved, how long the resistance lasts
under field conditions; additional terms you should be
familiar with are:
i. tolerance — plants are diseased, but they do not yield less
than healthy plants.
ii. induced resistance — a normally susceptible plant treated
with an avirulent strain of a pathogen gives a resistant
reaction when challenged later with a strain that is virulent.
Amit Kumar Sahoo
12
Biological control-III
2. Antagonists — control using microorganisms that inhibit the growth,
development, or reproduction of pathogens
Four types of activity:
1. Antibiosis — inhibition of pathogen through antibiotics produced by the
antagonist - examples: streptomycin (antibacterial, from actinomycete),
penicillin (antibacterial, from fungus)
2. Competition — two organisms attempt to utilize the same limiting
factors (nutrients, oxygen); supply not large enough to support both
antagonist and pathogen
3. Amensalism — antagonist makes the environment unsuitable for the
pathogen (modifies pH, temperature, moisture)
4. Parasitism & predation — antagonist directly attacks the pathogen
example: nematode-trapping fungi
Amit Kumar Sahoo
13
Control of insect vectors
 There are many examples in which losses by bacteria, viruses, and
mycoplasma-like disease agents can be reduced by controlling aphids,
leafhoppers, thrips, beetles, and other carriers of these agents.
14
Amit Kumar Sahoo
15
Cultural control-I
Cultural (physical) control — manipulation of the environment
There are many types of cultural control. Here are few selected examples:
1. Crop rotation — rotate crops and varieties over seasons to reduce
pathogen inoculum levels * This is probably the most widely employed
control measure in agriculture! example: rotate soybean with corn to
control soybean cyst nematode
2. Selection of planting date or planting location — choose a time/place
favorable for the host, rather than the pathogen: avoid pathogen or its
vector example: (time) plant cotton late to control damping-off caused
by Pythium (warm soil)
3. Seeding rate and canopy density — adjust within-row and between-row
spacing to open the canopy and reduce diseases that spread in the
humid, protected canopy environment
Amit Kumar Sahoo
16
Cultural control-II
Cultural (physical) control — manipulation of the environment
4. Irrigation
a. Pathogens can be spread in irrigation water or favored by wet soils-
example: late blight (Phytophthora)
b. Pathogens can be controlled by flooding - example: Fusarium wilt on
banana
5. Control insects and weeds — insects vector viruses and other
pathogens; weeds serve as alternate hosts for pathogens or vectors and
increase canopy density
6. Sanitation ~ keep area free of diseased plant material by pruning
diseased branches (fireblight), plowing under or burning debris,
washing and sterilizing harvesting and processing equipment (Rhizopus
soft rot); poor sanitation contributed to the late blight outbreak that
caused the Irish famine
7. Heat or refrigeration -- hot air, hot water, or steam treatments are used
to kill pathogens in seed or propagation materials; harvested fruits and
vegetables are kept refrigerated
Amit Kumar Sahoo
17
How are the tomatoes is in this photo
being watered? How does this help to reduce
disease?
Drip irrigation is used here. The water moves out into
the field in the blue pipes which, in turn, feed water
to small emitter lines that deliver water under the
plastic mulch right at the base of plants.
Because the foliage doesn't get wet, development
and spread of fungi and bacteria are much reduced.
What is the obvious
cultural control in this picture?
Mulching is the obvious answer. Of
course, there are many benefits to
be gained from mulching, including
weed control, soil moisture
optimization, and soil temperature
moderation. But mulches can serve
as a barrier between above-ground
plant parts and pathogens in the
soil. Also, by reducing weeds and
alternate hosts for pathogens, such
as several viruses, mulches help in
the battle against diseases.
Legislative and regulatory control
DISEASE MANAGEMENT: QUARANTINE
The prevention of pathogens entering new regions is known as exclusion, and
is achieved by quarantine or by treating propagating material (elimination)
before its introduction. If an outbreak of a disease occurs in a new area,
efforts are made to eradicate the pathogen from that area.
 Risk management aims to reduce the risk of introduction and
establishment of pest species, for example by fumigating biological
material when it enters the country.
Ways to do it-
 Sanitation
 Disease-Free Propagating Material
 Eradication
18
Amit Kumar Sahoo
19Chemical Control-I
Application of pesticides
Pesticide — chemical that kills a pest (fungicide, bactericide, nematicide,
etc.); fungicides as examples, since fungi are the largest group of plant
pathogens
Types of fungicides and selected examples:
1. Inorganic
a. Sulfur -- oldest known fungicide
b. Copper — oldest formulated fungicide is the Bordeaux mixture (downy
mildew of grape); still the most widely used copper fungicide in the world
2. Organic
a. Protective fungicides -- protect infection court
i. thiram (Thiram, Tersan) — seed and bulb treatment of vegetables
ii. dichloran (Botran) ~ used against Botrytis on vegetables and flowers
iii. azoxystrobin (Quadris) -- used against leaf spots and blights, fruit rots
Amit Kumar Sahoo
20Chemical Control-II
Types of fungicides and selected examples:
2. Organic
b. Systemic fungicides — are absorbed through foliage
or roots and are translocated upward through the
xylem; control already established pathogens and
protect against new infections
i. metalaxyl (Ridomil, Apron) -- controls oomycetes
ii. benomyl (Benlate) — broad-spectrum fungicide
iii. propiconazole (Tilt) — broad-spectrum fungicide
iv. aldicarb (Temik) – broad spectrum – bacteria, nematodes,
etc.
Amit Kumar Sahoo
21Chemical Control-III
Types of fungicides and selected examples:
1. Inorganic
2. Organic
3. Fumigant — highly volatile, small molecular weight
compounds with activity against a wide variety of
pathogens (not limited to fungi); dangerous to humans
example: methyl bromide; currently being pulled from market
due to danger to non target organisms, including humans
Amit Kumar Sahoo
Chemical Control-IV
 Antibiotics are chemical produced by microorganisms,
which destroy or injure living organisms, in particular,
bacteria.
 Streptomycin is effective against a few fruit pathogens,
such as blights and cankers, and cyclohexamine can be
used to control some fungal pathogens of crops,
particularly powdery mildews and rusts.
22
Amit Kumar Sahoo
23
ISSUES RELATED TO CHEMICAL
DISEASE MANAGEMENT
 The main concerns are the risk of poisoning humans or animals,
contamination of livestock products, harm to beneficial insects, and the
contamination of food products, waterways and soil.
 The main risk to humans is during the preparation or application of these
chemicals, when they can be inhaled, ingested or absorbed through the
skin, and upon consumption of plants or their products.
 For example, Copper and Sulphur sprays have the potential to affect a
broad range of organisms if they are washed off the leaves and
accumulate in the soil or are washed into the waterways.
24
Amit Kumar Sahoo
To sum up
 The control of diseases in crops is still largely dominated by the use of
fungicides, but with the increasing incidence of fungicide resistance, plus
mounting concern for the environment resulting from excessive
agrochemical use, the search for alternative, reliable methods of disease
control is gaining momentum.
 The purpose is to examine the development and exploitation (or potential
for exploitation) of a range of non-chemical approaches to disease control,
with a focus on the need for a greater understanding of crop ecology as
the basis for effective disease control in the field.
25
Amit Kumar Sahoo
References
 Martinelli, F., Scalenghe, R., Davino, S., Panno, S., Scuderi, G., Ruisi, P., Villa, P., Stroppiana, D., Boschetti, M.,
Goulart, L.R., Davis, C.E., Dandekar, A.M. (2014). "Advanced methods of plant disease detection. A
review". Agronomy for Sustainable Development. 35: 1–25. doi:10.1007/s13593-014-0246-1.
 "Plant Diseases - History Of Plant Pathology". Retrieved 5 February 2015.
 Agrios, George N. Plant Pathology. 3rd ed. New York: Academic Press, 1972. print.
 Jackson RW (editor). (2009). Plant Pathogenic Bacteria: Genomics and Molecular Biology. Caister Academic
Press. ISBN 978-1-904455-37-0.
 erec.ifas.ufl.edu/plant_pathology_guidelines/module_07.shtml
 www.apsnet.org › APS › Education › Introductory › Topics in Plant Pathology
26
Amit Kumar Sahoo
Thank You
Sairam
27
Amit Kumar Sahoo

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Control of plant diseases

  • 1. Control of plant diseases Amit Kumar Sahoo II MSc Biosciences 15151 1
  • 2. Breeding resistant varieties, Control through protection(chemicals and environmental manipulation), Legislation (Quarantine and regulatory measures), Eradication. What is a Plant disease? Plant disease, an impairment of the normal state of a plant that interrupts or modifies its vital functions. 2
  • 3. The Big Picture  Main purpose behind understanding pathogens and the diseases they cause is so diseases can be controlled.  For most crops, the goal is to save most of the plant population, not selected individuals.  Purpose of disease control is to prevent disease from exceeding some level where profit or yield is significantly diminished. 3 Amit Kumar Sahoo
  • 4. Plant Disease Triangle 4Host Total Of all properties that affect susceptibility Pathogen Total of all properties of pathogen (virulence, abundance, etc.) Environment Total of all conditions That affect disease  All three factors are necessary components of disease  Area of triangle represents amount of disease Amit Kumar Sahoo
  • 5. Vanderplank’s Equivalence Theorem  Effects of host, pathogen and environment can be translated into terms of the rate parameter of an epidemic.  Changes in any component have an equivalent effect on disease.  More-less susceptible host  More-less aggressive pathogen  More-less favorable environment All affect amount of disease 5 Amit Kumar Sahoo
  • 6. Disease Cycles 6 Survival Inoculation Penetration Infection Disease Pathogen reduction Dispersal • Pathogens all go through a cycle with similar events. • Knowing how particular pathogen go through their cycle is important in developing management strategies. Amit Kumar Sahoo
  • 7. Basic principles of disease control: Control strategies can be divided into two groups based on their effect on the development of resistance to the control measure by the pathogen: 1. Eradicative control measures — designed to eliminate the entire pathogen population - examples: pesticides, vertical or complete resistance - These tend to select for resistant variants of the pathogen. Why? All individuals are affected, so the pathogen must adapt or die. 2. Management control measures — designed to reduce the pathogen population by destroying a portion of the population - examples: horizontal or partial resistance, antagonism, cultural practices, quarantine - These do not apply heavy selection pressure to the pathogen. Why? Portions of the pathogen population remain unaffected, no pressure to adapt. * Of the two, we prefer to use management strategies. 7 Amit Kumar Sahoo
  • 8. Disease control There are four basic types of control measures: a. Biological control b. Cultural control (includes physical control) c. Legislative and regulatory control d. Chemical control 8 Amit Kumar Sahoo
  • 9. Biological control-I Manipulation of biotic entities; host and antagonistic microorganisms 1. Host resistance - control based on the genes and the resistance mechanisms they control a. Van der Plank described two types of resistance (1960s; these are the "classics‘’): i. Vertical resistance — resistance that is effective against some, but not all, races of a pathogen; decreases the effective amount of incoming inoculum (avirulent races can't infect), but does not reduce the rate of disease development (virulent races are not affected) ii.Horizontal resistance — resistance that is effective against all races of the pathogen; decreases the rate of disease development for all races 9
  • 10. 10
  • 11. 11 Biological control-II b. Resistance has been defined in many other ways since Van der Plank, including systems based on: epidemiologic effects, number of genes involved, how long the resistance lasts under field conditions; additional terms you should be familiar with are: i. tolerance — plants are diseased, but they do not yield less than healthy plants. ii. induced resistance — a normally susceptible plant treated with an avirulent strain of a pathogen gives a resistant reaction when challenged later with a strain that is virulent. Amit Kumar Sahoo
  • 12. 12 Biological control-III 2. Antagonists — control using microorganisms that inhibit the growth, development, or reproduction of pathogens Four types of activity: 1. Antibiosis — inhibition of pathogen through antibiotics produced by the antagonist - examples: streptomycin (antibacterial, from actinomycete), penicillin (antibacterial, from fungus) 2. Competition — two organisms attempt to utilize the same limiting factors (nutrients, oxygen); supply not large enough to support both antagonist and pathogen 3. Amensalism — antagonist makes the environment unsuitable for the pathogen (modifies pH, temperature, moisture) 4. Parasitism & predation — antagonist directly attacks the pathogen example: nematode-trapping fungi Amit Kumar Sahoo
  • 13. 13
  • 14. Control of insect vectors  There are many examples in which losses by bacteria, viruses, and mycoplasma-like disease agents can be reduced by controlling aphids, leafhoppers, thrips, beetles, and other carriers of these agents. 14 Amit Kumar Sahoo
  • 15. 15 Cultural control-I Cultural (physical) control — manipulation of the environment There are many types of cultural control. Here are few selected examples: 1. Crop rotation — rotate crops and varieties over seasons to reduce pathogen inoculum levels * This is probably the most widely employed control measure in agriculture! example: rotate soybean with corn to control soybean cyst nematode 2. Selection of planting date or planting location — choose a time/place favorable for the host, rather than the pathogen: avoid pathogen or its vector example: (time) plant cotton late to control damping-off caused by Pythium (warm soil) 3. Seeding rate and canopy density — adjust within-row and between-row spacing to open the canopy and reduce diseases that spread in the humid, protected canopy environment Amit Kumar Sahoo
  • 16. 16 Cultural control-II Cultural (physical) control — manipulation of the environment 4. Irrigation a. Pathogens can be spread in irrigation water or favored by wet soils- example: late blight (Phytophthora) b. Pathogens can be controlled by flooding - example: Fusarium wilt on banana 5. Control insects and weeds — insects vector viruses and other pathogens; weeds serve as alternate hosts for pathogens or vectors and increase canopy density 6. Sanitation ~ keep area free of diseased plant material by pruning diseased branches (fireblight), plowing under or burning debris, washing and sterilizing harvesting and processing equipment (Rhizopus soft rot); poor sanitation contributed to the late blight outbreak that caused the Irish famine 7. Heat or refrigeration -- hot air, hot water, or steam treatments are used to kill pathogens in seed or propagation materials; harvested fruits and vegetables are kept refrigerated Amit Kumar Sahoo
  • 17. 17 How are the tomatoes is in this photo being watered? How does this help to reduce disease? Drip irrigation is used here. The water moves out into the field in the blue pipes which, in turn, feed water to small emitter lines that deliver water under the plastic mulch right at the base of plants. Because the foliage doesn't get wet, development and spread of fungi and bacteria are much reduced. What is the obvious cultural control in this picture? Mulching is the obvious answer. Of course, there are many benefits to be gained from mulching, including weed control, soil moisture optimization, and soil temperature moderation. But mulches can serve as a barrier between above-ground plant parts and pathogens in the soil. Also, by reducing weeds and alternate hosts for pathogens, such as several viruses, mulches help in the battle against diseases.
  • 18. Legislative and regulatory control DISEASE MANAGEMENT: QUARANTINE The prevention of pathogens entering new regions is known as exclusion, and is achieved by quarantine or by treating propagating material (elimination) before its introduction. If an outbreak of a disease occurs in a new area, efforts are made to eradicate the pathogen from that area.  Risk management aims to reduce the risk of introduction and establishment of pest species, for example by fumigating biological material when it enters the country. Ways to do it-  Sanitation  Disease-Free Propagating Material  Eradication 18 Amit Kumar Sahoo
  • 19. 19Chemical Control-I Application of pesticides Pesticide — chemical that kills a pest (fungicide, bactericide, nematicide, etc.); fungicides as examples, since fungi are the largest group of plant pathogens Types of fungicides and selected examples: 1. Inorganic a. Sulfur -- oldest known fungicide b. Copper — oldest formulated fungicide is the Bordeaux mixture (downy mildew of grape); still the most widely used copper fungicide in the world 2. Organic a. Protective fungicides -- protect infection court i. thiram (Thiram, Tersan) — seed and bulb treatment of vegetables ii. dichloran (Botran) ~ used against Botrytis on vegetables and flowers iii. azoxystrobin (Quadris) -- used against leaf spots and blights, fruit rots Amit Kumar Sahoo
  • 20. 20Chemical Control-II Types of fungicides and selected examples: 2. Organic b. Systemic fungicides — are absorbed through foliage or roots and are translocated upward through the xylem; control already established pathogens and protect against new infections i. metalaxyl (Ridomil, Apron) -- controls oomycetes ii. benomyl (Benlate) — broad-spectrum fungicide iii. propiconazole (Tilt) — broad-spectrum fungicide iv. aldicarb (Temik) – broad spectrum – bacteria, nematodes, etc. Amit Kumar Sahoo
  • 21. 21Chemical Control-III Types of fungicides and selected examples: 1. Inorganic 2. Organic 3. Fumigant — highly volatile, small molecular weight compounds with activity against a wide variety of pathogens (not limited to fungi); dangerous to humans example: methyl bromide; currently being pulled from market due to danger to non target organisms, including humans Amit Kumar Sahoo
  • 22. Chemical Control-IV  Antibiotics are chemical produced by microorganisms, which destroy or injure living organisms, in particular, bacteria.  Streptomycin is effective against a few fruit pathogens, such as blights and cankers, and cyclohexamine can be used to control some fungal pathogens of crops, particularly powdery mildews and rusts. 22 Amit Kumar Sahoo
  • 23. 23
  • 24. ISSUES RELATED TO CHEMICAL DISEASE MANAGEMENT  The main concerns are the risk of poisoning humans or animals, contamination of livestock products, harm to beneficial insects, and the contamination of food products, waterways and soil.  The main risk to humans is during the preparation or application of these chemicals, when they can be inhaled, ingested or absorbed through the skin, and upon consumption of plants or their products.  For example, Copper and Sulphur sprays have the potential to affect a broad range of organisms if they are washed off the leaves and accumulate in the soil or are washed into the waterways. 24 Amit Kumar Sahoo
  • 25. To sum up  The control of diseases in crops is still largely dominated by the use of fungicides, but with the increasing incidence of fungicide resistance, plus mounting concern for the environment resulting from excessive agrochemical use, the search for alternative, reliable methods of disease control is gaining momentum.  The purpose is to examine the development and exploitation (or potential for exploitation) of a range of non-chemical approaches to disease control, with a focus on the need for a greater understanding of crop ecology as the basis for effective disease control in the field. 25 Amit Kumar Sahoo
  • 26. References  Martinelli, F., Scalenghe, R., Davino, S., Panno, S., Scuderi, G., Ruisi, P., Villa, P., Stroppiana, D., Boschetti, M., Goulart, L.R., Davis, C.E., Dandekar, A.M. (2014). "Advanced methods of plant disease detection. A review". Agronomy for Sustainable Development. 35: 1–25. doi:10.1007/s13593-014-0246-1.  "Plant Diseases - History Of Plant Pathology". Retrieved 5 February 2015.  Agrios, George N. Plant Pathology. 3rd ed. New York: Academic Press, 1972. print.  Jackson RW (editor). (2009). Plant Pathogenic Bacteria: Genomics and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-37-0.  erec.ifas.ufl.edu/plant_pathology_guidelines/module_07.shtml  www.apsnet.org › APS › Education › Introductory › Topics in Plant Pathology 26 Amit Kumar Sahoo

Editor's Notes

  1. Biological control of disease employs natural enemies of pests or pathogens to eradicate or control their population. This can involve the introduction of exotic species, or it can be a matter of harnessing whatever form of biological control exists naturally in the ecosystem in question. The induction of plant resistance using nonpathogenic or incompatible microorganisms is also a form of biological control.
  2. The selection of appropriate planting material can involve planting resistant cultivars, planting a number of mixed cultivars, using certified seed and ensuring that disease is not spread on vegetative propagating material or on equipment. The destruction of crop residues, which can harbour many pathogens, by burying, burning or removal is an important practice performed between cropping seasons.
  3. Burying crop residues can destroy some pathogens, if ploughed in deeply enough, but some pathogens can survive, and even benefit from this process if it serves to spread them throughout the field. Burning crop debris is a common practice, especially for cereal crops, and it is a successful method of destroying many pathogens. The elimination of living plants that carry pathogens can include both remnant or diseased crop plants and also wild plants or weeds that can act as alternative hosts between seasons. Some rusts, for example, cannot complete their life cycle in the absence of an alternate host, where they undergo sexual recombination. Removing alternate hosts can delay an outbreak, but often inoculum finds its way to crop plants via wind or another vector.