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APPLICATIONOFCOMPUTERSINEPIDEMIOLOGY(CM7.9)
Dr ANJALI MALL
ASSISTANT PROFESSOR
DEPARTMENT OF COMMUNITY MEDICINE
Specific Learning Objectives—(60mts)
At the end of the topic, the student should be able to tell
1. Introduction and a brief history(5mts)
2. Enumerate various use of computers in epidemiology(5mts)
3. Describe the uses in detail. (25mts)
4. Challenges faced during the application (5mts)
5. Problems and constraints(10mts)
6. Limitations of computer use(10mts)
C
1. INTRODUCTION
AND BRIEF HISTORY
Introduction –History
Introduction-History-cont.
Introduction –History cont.-15th August
2020
C
2. VARIOUS USES OF COMPUTERS IN
EPIDEMIOLOGY AND HEALTH –
ENUMERATE
Health Management
Information System
Developing Databases
For Epidemiological
Research
Statistical Analysis Of
Epidemiological And
Health Research Data
Disease Surveillance Telemedicine
Electronic Medical
Records
Geographic
Information System
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3.DESCRIPTION OF VARIOUS
USES
1. HEALTH MANAGEMENT
INFORMATION SYSTEM
DEFINITION: a tool that helps in
gathering, aggregating, analysing,
using the information generated for
taking actions to improve the
performance of health systems.
Domains/fields of health information
system
•It includes demography, vital statistics, health system
input, output, health determinants, health economics,
health status, health infrastructure, resources and
outcome, financial statistics, environmental health
statistics.
Information -process
Data collection
Resources
Data transmission
Management
Data processing
Organizational rules
Data analysis
Information for use in
planning and management
Sources of HMIS
• Census
• Registration of vital events( birth, death, marriage etc)
• Notification of diseases and disease registers.
• Records and reports of hospitals
• Statistics regarding environmental health.
• Statistics regarding health resources and services.
Sources of HMIS
• Sample survey( national sample survey organization)
• Population survey
• Statistics regarding efforts to check epidemiological diseases and
research in this field.
• School record
• Economic planning
• Plans of social security
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HMIS-HEALTH MANAGEMENT INFORMATION
SYSTEM (NHP.GOV.IN)
2. DEVELOPING DATABASES
FOR EPIDEMIOLOGICAL
RESEARCH
Modern medical and epidemiological research is
heavily dependent on computers for entering,
correcting, validating and storing the research for
further analysis.
Usually, database applications such
as “EXCEL” are used.
Some statistical applications have an
inbuilt capability to enter and store
the data.
Various databases used in epidemiology
Support of Survey and Questionnaire Data Collection
•Epi info (CDC, Atlanta, GA)
•Microsoft Access((Microsoft
Corp., Redmond, WA)
•REDCap (Vanderbilt University,
Nashville, TN)
•Google form
•Free public- domain suite of software tools designed and maintained by CDC for public health
practitioners and researchers
•Easy to set up; can be used to support mobile data collection also Web- based and cloud- optimized
components for data collection
•Contains customizable data entry forms and database construction
•Enables data analyses with epidemiologic statistics, maps, and graphs for public health professionals
who lack an IT background
•Used in outbreak investigations and for developing small- to- mid– sized disease surveillance systems
•Useful for public health field investigators to know and use because of its capabilities
•Available for free download at http://www.cdc.gov/epiinfo
Microsoft Acesss
Microsoft Access (Microsoft
Corp., Redmond, WA) •Database management system and
part of the Microsoft Office suite
•Makes data easy to store and
manipulate
•Limitation: single- user data entry
•Additional information available
at https://www.microsoft.com/en-
us/external icon
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3.STATISTICALANALYSISOFEPIDEMIOLOGICALANDHEALTH
RESEARCHDATA
To analyze the voluminous data, statistical software is
available e.g., EPI Info, SPSS, STATA etc.
Applications for Analysis, Visualization, and Reporting (AVR)
SAS (Statistical Analysis System; SAS Institute, Inc.,
Cary, NC)
•Statistical analysis software suite for advanced
analytics, multivariate analyses, business
intelligence, data management, and predictive
analytics
•Highly powerful software application
•Additional information available
at https://www.sas.com/en_
us/home.htmlexternal icon
Applications for Analysis, Visualization, and Reporting (AVR)
SPSS (IBM Corporation,
Armonk, NY)
Additional information available
at http://www.ibm.com/spssext
ernal icon
• Analytic software widely used in social
science studies
•In addition to statistical analysis, features
data management (e.g., selecting cases,
reshaping files, or creating derived data)
and data documentation (e.g., metadata
dictionary stored in the data file)
Applications for Analysis, Visualization, and Reporting (AVR)
ESSENCE (Electronic Surveillance System for the
Early Notification of Community-based Epidemics)
Additional information about the National
Syndromic Surveillance Program and ESSENCE is
available
at https://www.cdc.gov/nssp/news.ht
ml#ISDS
•Syndromic surveillance system
operational in many jurisdictions and
nationally as part of CDC’s National
Syndromic Surveillance Program
•Developed by the Johns Hopkins
University Applied Physics Laboratory
•Enhancements developed through a
collaboration among CDC, state and local
health departments, and the Applied
Physics Laboratory
Applications for Analysis, Visualization, and Reporting
(AVR)
HealthMap (Boston Children’s Hospital,
Boston, MA)
Available for use
at http://www.healthmap.orgexter
nal icon
• Free mapping utility
•Uses informal Internet sources (e.g., online news
aggregators, eyewitness reports, expert- curated
discussions, and validated official reports) for
disease outbreak monitoring and real- time
surveillance of emerging public health threats to
achieve a unified and comprehensive view of the
current global state of infectious diseases
4. DISEASE
SURVEILLANCE
Computer-based surveillance help in:
• Rapid transmission
• Monitoring progress
• Analysis of morbidity data
E.g., IDSP in which data are transmitted by state
health department computers to central surveillance
units through electronic mail for rapid analysis and
display of results and for prevention of outbreaks.
5. TELEMEDICINE
DEFINITION: Delivery of healthcare services,
by healthcare professionals using information and
communication technologies for the exchange of
valid information of diagnosis, treatment and
prevention of diseases
• Good alternative for delivering healthcare for
rural and geographically distant population.
SUPPORT
In India, telemedicine programs are being actively supported by:
• Department of Information Technology (DIT)
• Indian Space Research Organization
• NEC Telemedicine program for North-Eastern states
• Apollo Hospitals
• Asia Heart Foundation
• State governments
• Telemedicine technology also supported by some other private organizations
Evolution of Telemedicine
Point to
Point
• One patient
connected to one
doctor
• Within same
hospital
Point to
Multi
Point
•One patient end at a
time connected to
many specialist doctors
•Within the same
hospital
Multipoint
to
Multipoint
•Several patient ends
connectedto several
different specialist
doctors
•At different hospitals, in
different geographical
distances
Telemedicine :
ways of
communication
The telemedicine system consists:
• TELEMEDICINE PLATFORM - computer
or even digital mobile phone
• TELEMEDICINE SOFTWARE - for
capturing of patient’s information including
images, at both patient’s and doctor’s end
along with availability of communication
media.
6.ELECTRONIC MEDICAL RECORDS(EMR)
EMR is a secure and
confidential method of
keeping medical records, as
compared to hardcopies of
paper-based medical records.
Ensures completeness, quick retrieval, much less
space requirement, as well as fast retrieval of
specific data for research, besides allowing for
tracking specific patients.
E.g., recently initiated
MCTS- Mother and Child
tracking system is a good
example of electronic health
record system
Electronic Medical transfer –proposed(India)
7.GEOGRAPHIC INFORMATION SYSTEM (GIS)
• DEFINITION: Automated systems of software and hardware for the capture,
storage, retrieval, analysis and display of spatial and non-spatial data.
• GIS is a computer-based information system that is used to digitally represent
and analyze the geographic features present on the earth’s surface and the
events that are taking place on it.
• It utilizes various techniques such as cartography, statistical analysis, and
database technology, utilizing information from digital maps, global
positioning surveys, census data, and data from other sectors.
• Presently, GIS is being utilized for the prevention and control of vector-borne
diseases.
Application –Example
Examples of e-Health India
• National Health Portal of India, Gateway to Authentic Health
Information (nhp.gov.in)
• Pradhan Mantri Surakshit Matritva Abhiyan | PMSMA (nhp.gov.in)
• Nikshay
• Official Website Ayushman Bharat | HWC (nhp.gov.in)
Challenges faced during application of
computer in Epidemiology
C
4. CHALLENGES FACED
C
5. PROBLEMS AND
CONSTRAINTS IN INDIA
Problems or constraints in India
1. Structural
• Multiplicity of institutions and departments
• Fragmentation of data.
• Lack of infrastructural facilities for storage and
maintenance of records.
Problems or constraints-cont.
2. Procedural
• Excessive information
• Encryption/hidden issues
• Exhaustive information, seldom used.
• Overburden of collection and recording of data along with General
health care.
• Incomplete, unreliable and intentionally managed information.
Problems or constraints-cont.
2. Procedural
• Repetition of general information
• Inappropriate forms/cards/reports
• Less interest of users in information
• Time consuming procedure
• Confusing coding, long list of indices
• Absence of feedback to information suppliers.
Problems or constraints.-cont.
3. Related to content
• Mostly service utilization statistics.
• Only summarized information reaches at higher level.
• Less emphasis on socioeconomic information.
• no user friendly
Problems or constraints –cont.
4. Related to human resource
• Absence or lack of skilled medical record professionals
• Lack of opportunity for in service training for the staff.
• Health care providers/nurses/biomedical trained persons
are collecting and preparing data.
• Lack of motivation/extra incentives
Problems or constraints-cont.
5. Technological
• Much manual paper based system.
• Absence or lack of computerized data base
system
C
6. LIMITATIONS
Limitations
Limitations
References
1. PVD Shetty,M Khapre –Short notes in Community Medicine, third edition
2. K Park –Park textbook of preventive and Social Medicine,24th edition
3. geographicinformationsysteminpublichealthbikram-190426111355.pdf
4. Health Services and Outcomes Research Methodology (2021) 21:339–362 Standard
electronic health record (EHR) framework for Indian healthcare system |
SpringerLink
5. Application of GIS in public health in India: A literature-based review, analysis, and
recommendations - PubMed (nih.gov) Indian J Public Health. 2016 Jan-
Mar;60(1):51-8. doi: 10.4103/0019-557X.177308.
C
THANK YOU

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APPLICATION OF COMPUTERS IN EPIDEMIOLOGY AND PUBLIC HEALTH - ANJALI MAM.pptx

  • 2. Specific Learning Objectives—(60mts) At the end of the topic, the student should be able to tell 1. Introduction and a brief history(5mts) 2. Enumerate various use of computers in epidemiology(5mts) 3. Describe the uses in detail. (25mts) 4. Challenges faced during the application (5mts) 5. Problems and constraints(10mts) 6. Limitations of computer use(10mts)
  • 7. C 2. VARIOUS USES OF COMPUTERS IN EPIDEMIOLOGY AND HEALTH – ENUMERATE
  • 8. Health Management Information System Developing Databases For Epidemiological Research Statistical Analysis Of Epidemiological And Health Research Data Disease Surveillance Telemedicine Electronic Medical Records Geographic Information System
  • 10. 1. HEALTH MANAGEMENT INFORMATION SYSTEM DEFINITION: a tool that helps in gathering, aggregating, analysing, using the information generated for taking actions to improve the performance of health systems.
  • 11. Domains/fields of health information system •It includes demography, vital statistics, health system input, output, health determinants, health economics, health status, health infrastructure, resources and outcome, financial statistics, environmental health statistics.
  • 12. Information -process Data collection Resources Data transmission Management Data processing Organizational rules Data analysis Information for use in planning and management
  • 13. Sources of HMIS • Census • Registration of vital events( birth, death, marriage etc) • Notification of diseases and disease registers. • Records and reports of hospitals • Statistics regarding environmental health. • Statistics regarding health resources and services.
  • 14. Sources of HMIS • Sample survey( national sample survey organization) • Population survey • Statistics regarding efforts to check epidemiological diseases and research in this field. • School record • Economic planning • Plans of social security
  • 16. 2. DEVELOPING DATABASES FOR EPIDEMIOLOGICAL RESEARCH Modern medical and epidemiological research is heavily dependent on computers for entering, correcting, validating and storing the research for further analysis. Usually, database applications such as “EXCEL” are used. Some statistical applications have an inbuilt capability to enter and store the data.
  • 17. Various databases used in epidemiology Support of Survey and Questionnaire Data Collection •Epi info (CDC, Atlanta, GA) •Microsoft Access((Microsoft Corp., Redmond, WA) •REDCap (Vanderbilt University, Nashville, TN) •Google form
  • 18.
  • 19. •Free public- domain suite of software tools designed and maintained by CDC for public health practitioners and researchers •Easy to set up; can be used to support mobile data collection also Web- based and cloud- optimized components for data collection •Contains customizable data entry forms and database construction •Enables data analyses with epidemiologic statistics, maps, and graphs for public health professionals who lack an IT background •Used in outbreak investigations and for developing small- to- mid– sized disease surveillance systems •Useful for public health field investigators to know and use because of its capabilities •Available for free download at http://www.cdc.gov/epiinfo
  • 20. Microsoft Acesss Microsoft Access (Microsoft Corp., Redmond, WA) •Database management system and part of the Microsoft Office suite •Makes data easy to store and manipulate •Limitation: single- user data entry •Additional information available at https://www.microsoft.com/en- us/external icon
  • 21. C 3.STATISTICALANALYSISOFEPIDEMIOLOGICALANDHEALTH RESEARCHDATA To analyze the voluminous data, statistical software is available e.g., EPI Info, SPSS, STATA etc.
  • 22. Applications for Analysis, Visualization, and Reporting (AVR) SAS (Statistical Analysis System; SAS Institute, Inc., Cary, NC) •Statistical analysis software suite for advanced analytics, multivariate analyses, business intelligence, data management, and predictive analytics •Highly powerful software application •Additional information available at https://www.sas.com/en_ us/home.htmlexternal icon
  • 23. Applications for Analysis, Visualization, and Reporting (AVR) SPSS (IBM Corporation, Armonk, NY) Additional information available at http://www.ibm.com/spssext ernal icon • Analytic software widely used in social science studies •In addition to statistical analysis, features data management (e.g., selecting cases, reshaping files, or creating derived data) and data documentation (e.g., metadata dictionary stored in the data file)
  • 24. Applications for Analysis, Visualization, and Reporting (AVR) ESSENCE (Electronic Surveillance System for the Early Notification of Community-based Epidemics) Additional information about the National Syndromic Surveillance Program and ESSENCE is available at https://www.cdc.gov/nssp/news.ht ml#ISDS •Syndromic surveillance system operational in many jurisdictions and nationally as part of CDC’s National Syndromic Surveillance Program •Developed by the Johns Hopkins University Applied Physics Laboratory •Enhancements developed through a collaboration among CDC, state and local health departments, and the Applied Physics Laboratory
  • 25. Applications for Analysis, Visualization, and Reporting (AVR) HealthMap (Boston Children’s Hospital, Boston, MA) Available for use at http://www.healthmap.orgexter nal icon • Free mapping utility •Uses informal Internet sources (e.g., online news aggregators, eyewitness reports, expert- curated discussions, and validated official reports) for disease outbreak monitoring and real- time surveillance of emerging public health threats to achieve a unified and comprehensive view of the current global state of infectious diseases
  • 26. 4. DISEASE SURVEILLANCE Computer-based surveillance help in: • Rapid transmission • Monitoring progress • Analysis of morbidity data E.g., IDSP in which data are transmitted by state health department computers to central surveillance units through electronic mail for rapid analysis and display of results and for prevention of outbreaks.
  • 27.
  • 28. 5. TELEMEDICINE DEFINITION: Delivery of healthcare services, by healthcare professionals using information and communication technologies for the exchange of valid information of diagnosis, treatment and prevention of diseases • Good alternative for delivering healthcare for rural and geographically distant population.
  • 29.
  • 30.
  • 31. SUPPORT In India, telemedicine programs are being actively supported by: • Department of Information Technology (DIT) • Indian Space Research Organization • NEC Telemedicine program for North-Eastern states • Apollo Hospitals • Asia Heart Foundation • State governments • Telemedicine technology also supported by some other private organizations
  • 32. Evolution of Telemedicine Point to Point • One patient connected to one doctor • Within same hospital Point to Multi Point •One patient end at a time connected to many specialist doctors •Within the same hospital Multipoint to Multipoint •Several patient ends connectedto several different specialist doctors •At different hospitals, in different geographical distances Telemedicine : ways of communication
  • 33. The telemedicine system consists: • TELEMEDICINE PLATFORM - computer or even digital mobile phone • TELEMEDICINE SOFTWARE - for capturing of patient’s information including images, at both patient’s and doctor’s end along with availability of communication media.
  • 34. 6.ELECTRONIC MEDICAL RECORDS(EMR) EMR is a secure and confidential method of keeping medical records, as compared to hardcopies of paper-based medical records. Ensures completeness, quick retrieval, much less space requirement, as well as fast retrieval of specific data for research, besides allowing for tracking specific patients. E.g., recently initiated MCTS- Mother and Child tracking system is a good example of electronic health record system
  • 35. Electronic Medical transfer –proposed(India)
  • 36. 7.GEOGRAPHIC INFORMATION SYSTEM (GIS) • DEFINITION: Automated systems of software and hardware for the capture, storage, retrieval, analysis and display of spatial and non-spatial data. • GIS is a computer-based information system that is used to digitally represent and analyze the geographic features present on the earth’s surface and the events that are taking place on it. • It utilizes various techniques such as cartography, statistical analysis, and database technology, utilizing information from digital maps, global positioning surveys, census data, and data from other sectors. • Presently, GIS is being utilized for the prevention and control of vector-borne diseases.
  • 37.
  • 38.
  • 39.
  • 40.
  • 41.
  • 43. Examples of e-Health India • National Health Portal of India, Gateway to Authentic Health Information (nhp.gov.in) • Pradhan Mantri Surakshit Matritva Abhiyan | PMSMA (nhp.gov.in) • Nikshay • Official Website Ayushman Bharat | HWC (nhp.gov.in)
  • 44. Challenges faced during application of computer in Epidemiology
  • 47. Problems or constraints in India 1. Structural • Multiplicity of institutions and departments • Fragmentation of data. • Lack of infrastructural facilities for storage and maintenance of records.
  • 48. Problems or constraints-cont. 2. Procedural • Excessive information • Encryption/hidden issues • Exhaustive information, seldom used. • Overburden of collection and recording of data along with General health care. • Incomplete, unreliable and intentionally managed information.
  • 49. Problems or constraints-cont. 2. Procedural • Repetition of general information • Inappropriate forms/cards/reports • Less interest of users in information • Time consuming procedure • Confusing coding, long list of indices • Absence of feedback to information suppliers.
  • 50. Problems or constraints.-cont. 3. Related to content • Mostly service utilization statistics. • Only summarized information reaches at higher level. • Less emphasis on socioeconomic information. • no user friendly
  • 51. Problems or constraints –cont. 4. Related to human resource • Absence or lack of skilled medical record professionals • Lack of opportunity for in service training for the staff. • Health care providers/nurses/biomedical trained persons are collecting and preparing data. • Lack of motivation/extra incentives
  • 52. Problems or constraints-cont. 5. Technological • Much manual paper based system. • Absence or lack of computerized data base system
  • 56. References 1. PVD Shetty,M Khapre –Short notes in Community Medicine, third edition 2. K Park –Park textbook of preventive and Social Medicine,24th edition 3. geographicinformationsysteminpublichealthbikram-190426111355.pdf 4. Health Services and Outcomes Research Methodology (2021) 21:339–362 Standard electronic health record (EHR) framework for Indian healthcare system | SpringerLink 5. Application of GIS in public health in India: A literature-based review, analysis, and recommendations - PubMed (nih.gov) Indian J Public Health. 2016 Jan- Mar;60(1):51-8. doi: 10.4103/0019-557X.177308.