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CHEM 121 – Biochemistry for
Nurses
Unit 1 – Introduction to Biochemistry
Introduction
 Definition of Biochemistry:
Biochemistry is the chemistry of
biological systems
 Molecules are lifeless but they
compose living things
 These molecules are called
Biomolecules
Biomolecules
Building block
(Monomer)
Macromolecule
(Polymer)
Amino Acids Protein
Sugar residues (e.g
glucose, sucrose,
fructose)
Carbohydrate
Nucleic Acids DNA, RNA
Glycerol and fatty acids Lipids
Characteristics of Living Systems
1. Living organisms are
complicated and highly
organized
 composed of many cells
 cells are highly structured into
organelles; macromolecules within
organelles take part in many
chemical reactions
2. Biological structures serve
functional purposes
 Structures are specific
 The levels of organization observed
by organelles and macromolecules
allows them to perform specific
functions
Characteristics of Living Systems
3. Energy transfomations occur within
living systems
 Solar energy is transformed into ATP
(adenosine triphosphate) and NADPH
(nicotinamide adenine dinucleotide
phosphate) which are special
biomolecules which provide energy to the
cell
 Activities of the cell which require energy
include biosynthesis, movement and
osmotic work against a concentration
gradient
Characteristics of Living Systems
4. Living systems are highly
efficient at self-replication.
 This is due to DNA
(deoxyribonucleic acid) molecules
which are able to reproduce into
duplicate DNA strands from an
original DNA strand.
Characteristics of Living Systems
 Biomolecules are composed mainly of six
nonmetallic elements: carbon, oxygen,
hydrogen, nitrogen, phosphorous, and
sulfur
 These atoms make up >97% of the weight
of most organisms
 These elements can form stable covalent
bonds
Points to note:
 Water is a major component of cells
 Carbon is more abundant in living
organisms than it is in the rest of the
universe
What elements are biomolecules
composed of?
Periodic Table showing the elements present in biomolecules
• Important elements found in living cells are
shown in color
• The six abundant elements are in red
(CHNOPS)
• Five essential ions are in purple
• Trace elements are in dark blue (more
common) and light blue (less common)
Biomolecules are essentially organic
compounds
Common functional groups present in
biomolecules
Common linkages present in
biomolecules
Why is carbon so predominant in
living systems?
 This is because of the ability of
carbon atoms to bond together to
form long chains and rings.
Carbon
Carbon can covalently bond with up
to four other atoms.
Carbon can form immensely diverse compounds,
from simple to complex.
Methane with 1 Carbon
atom
DNA with tens of Billions of
Carbon atoms
LINEAR ALIPHATIC
CYCLIC
BRANCHED
Examples of Carbon Biomolecules
Hierarchy of Molecular Components
in a Cell
The
Cell
And its Organelles
Supramolecular
Complexes
e.g Enzyme complexes,
ribosomes,chromosomes
Macromolecules
Proteins, Carbohydrates, Lipids,
DNA, RNA
Biomolecules
(Building Blocks) Amino acids, Sugars,
Fatty acids, Glycerol, Nucleic acids
Metabolites
Pyruvate,citrate, succinate,
Glyceraldehyde 3 phosphate, Fructose-1,6-bisphosphate
Precursors
H2O, CO2, NH4
+, NO3
- and N2
 Precursors or metabolites (H2O, CO2, NO3
-, NH4
+
and N2) react chemically to produce biomolecules
such as amino acids, sugars (monosaccharides),
nucleic acids, fatty acids, glycerol.
 These biomolecules are building blocks or monomers
for the formation of the polymers which are
macromolecules
Each type of macromolecule is made up of a different
type of building block.
 Macromolecules are assembled into supramolecular
complexes (e.g chromosomes, ribosomes, enzyme
complexes) which are responsible for specialized
functions
 Supramolecular complexes are localized into
organelles within each cell. Organelles also have
specific functions
Properties of Biomolecules Which Reflect
their Suitability for Living Systems
1. Macromolecules are made up of building blocks which make them
non-symmetrical. They have structural polarity
2. Because of this structural polarity, they are able to store
information. The sequence of building blocks which make up the
macromolecules allows different bits of information to be stored e.g
proteins (made up of amino acids) and DNA (made up of nucleic
acids)
3. They have unique 3D shapes because of their sequences which give
them different chemical and physical properties and allow
them to perform different functions
4. Weak chemical forces (non-covalent) link macromolecules together
which allow constant formation and breaking of interactions
between macromolecules. These forces include hydrogen bonds,
van der Waals forces, ionic and hydrophobic interactions.
5. There is structural complementarity between certain
macromolecules which allow them to recognize each other. Weak
chemical forces hold these macromolecules together when
necessary so that their functions can be carried out, after which the
attractions are broken e.g an enzyme and its specific substrate
LEVEL 1: THE CELL AND ITS ORGANELLES
LEVEL 2: SUPRAMOLECULAR COMPLEXES
LEVEL 3: MACROMOLECULES
LEVEL 4: BIOMOLECULES
IN SUPRAMOLECULAR COMPLEXES, THE DIFFERENT MACROMOLECULES ARE HELD
TOGETHER BY (e.g.)
HYDROGEN BONDS (between polar groups),
IONIC INTERACTIONS (betw. charged groups),
HYDROPHOBIC INTERACTIONS (betw. nonpolar groups), AND
VAN DER WAALS INTERACTIONS (these bonds have energies of only a few kJ; covalent
bonds have bond energies of 200 to 900 kJ/mol)
Comparison of non-covalent forces of
attraction between molecules
Metabolism
 Definition: Metabolism is the set
of chemical reactions that
happen in living organisms to
maintain life. These processes
allow organisms to grow and
reproduce, maintain their
structures, and respond to their
environments.
en.wikipedia.org/wiki/Metabolism
• Prokaryotes - do not have a membrane-
bound nucleus or other organelles
2 classes or lineages – eubacteria and
archaea (thermoacidophiles, halophiles and
methanogens)
• Eukaryotes - possess nucleus and other
organelles
Cells – 2 categories
References
 Biochemistry (3rd Edition) by Garrett
and Grisham
 acad.erskine.edu/facultyweb/smith/
.../Powerpoints/HortonCH1.ppt
 www.passovoy.com/biology/Bioche
mistry-Biomolecules.ppt

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MC2 biochemistry-for-nurses-unit-1.ppt

  • 1. CHEM 121 – Biochemistry for Nurses Unit 1 – Introduction to Biochemistry
  • 2. Introduction  Definition of Biochemistry: Biochemistry is the chemistry of biological systems  Molecules are lifeless but they compose living things  These molecules are called Biomolecules
  • 3. Biomolecules Building block (Monomer) Macromolecule (Polymer) Amino Acids Protein Sugar residues (e.g glucose, sucrose, fructose) Carbohydrate Nucleic Acids DNA, RNA Glycerol and fatty acids Lipids
  • 4. Characteristics of Living Systems 1. Living organisms are complicated and highly organized  composed of many cells  cells are highly structured into organelles; macromolecules within organelles take part in many chemical reactions
  • 5. 2. Biological structures serve functional purposes  Structures are specific  The levels of organization observed by organelles and macromolecules allows them to perform specific functions Characteristics of Living Systems
  • 6. 3. Energy transfomations occur within living systems  Solar energy is transformed into ATP (adenosine triphosphate) and NADPH (nicotinamide adenine dinucleotide phosphate) which are special biomolecules which provide energy to the cell  Activities of the cell which require energy include biosynthesis, movement and osmotic work against a concentration gradient Characteristics of Living Systems
  • 7. 4. Living systems are highly efficient at self-replication.  This is due to DNA (deoxyribonucleic acid) molecules which are able to reproduce into duplicate DNA strands from an original DNA strand. Characteristics of Living Systems
  • 8.  Biomolecules are composed mainly of six nonmetallic elements: carbon, oxygen, hydrogen, nitrogen, phosphorous, and sulfur  These atoms make up >97% of the weight of most organisms  These elements can form stable covalent bonds Points to note:  Water is a major component of cells  Carbon is more abundant in living organisms than it is in the rest of the universe What elements are biomolecules composed of?
  • 9. Periodic Table showing the elements present in biomolecules • Important elements found in living cells are shown in color • The six abundant elements are in red (CHNOPS) • Five essential ions are in purple • Trace elements are in dark blue (more common) and light blue (less common)
  • 10.
  • 11. Biomolecules are essentially organic compounds
  • 12. Common functional groups present in biomolecules
  • 13. Common linkages present in biomolecules
  • 14. Why is carbon so predominant in living systems?  This is because of the ability of carbon atoms to bond together to form long chains and rings.
  • 16. Carbon can covalently bond with up to four other atoms.
  • 17. Carbon can form immensely diverse compounds, from simple to complex. Methane with 1 Carbon atom DNA with tens of Billions of Carbon atoms
  • 19. Hierarchy of Molecular Components in a Cell The Cell And its Organelles Supramolecular Complexes e.g Enzyme complexes, ribosomes,chromosomes Macromolecules Proteins, Carbohydrates, Lipids, DNA, RNA Biomolecules (Building Blocks) Amino acids, Sugars, Fatty acids, Glycerol, Nucleic acids Metabolites Pyruvate,citrate, succinate, Glyceraldehyde 3 phosphate, Fructose-1,6-bisphosphate Precursors H2O, CO2, NH4 +, NO3 - and N2
  • 20.  Precursors or metabolites (H2O, CO2, NO3 -, NH4 + and N2) react chemically to produce biomolecules such as amino acids, sugars (monosaccharides), nucleic acids, fatty acids, glycerol.  These biomolecules are building blocks or monomers for the formation of the polymers which are macromolecules Each type of macromolecule is made up of a different type of building block.  Macromolecules are assembled into supramolecular complexes (e.g chromosomes, ribosomes, enzyme complexes) which are responsible for specialized functions  Supramolecular complexes are localized into organelles within each cell. Organelles also have specific functions
  • 21. Properties of Biomolecules Which Reflect their Suitability for Living Systems 1. Macromolecules are made up of building blocks which make them non-symmetrical. They have structural polarity 2. Because of this structural polarity, they are able to store information. The sequence of building blocks which make up the macromolecules allows different bits of information to be stored e.g proteins (made up of amino acids) and DNA (made up of nucleic acids) 3. They have unique 3D shapes because of their sequences which give them different chemical and physical properties and allow them to perform different functions 4. Weak chemical forces (non-covalent) link macromolecules together which allow constant formation and breaking of interactions between macromolecules. These forces include hydrogen bonds, van der Waals forces, ionic and hydrophobic interactions. 5. There is structural complementarity between certain macromolecules which allow them to recognize each other. Weak chemical forces hold these macromolecules together when necessary so that their functions can be carried out, after which the attractions are broken e.g an enzyme and its specific substrate
  • 22. LEVEL 1: THE CELL AND ITS ORGANELLES LEVEL 2: SUPRAMOLECULAR COMPLEXES LEVEL 3: MACROMOLECULES LEVEL 4: BIOMOLECULES IN SUPRAMOLECULAR COMPLEXES, THE DIFFERENT MACROMOLECULES ARE HELD TOGETHER BY (e.g.) HYDROGEN BONDS (between polar groups), IONIC INTERACTIONS (betw. charged groups), HYDROPHOBIC INTERACTIONS (betw. nonpolar groups), AND VAN DER WAALS INTERACTIONS (these bonds have energies of only a few kJ; covalent bonds have bond energies of 200 to 900 kJ/mol)
  • 23. Comparison of non-covalent forces of attraction between molecules
  • 24. Metabolism  Definition: Metabolism is the set of chemical reactions that happen in living organisms to maintain life. These processes allow organisms to grow and reproduce, maintain their structures, and respond to their environments. en.wikipedia.org/wiki/Metabolism
  • 25. • Prokaryotes - do not have a membrane- bound nucleus or other organelles 2 classes or lineages – eubacteria and archaea (thermoacidophiles, halophiles and methanogens) • Eukaryotes - possess nucleus and other organelles Cells – 2 categories
  • 26. References  Biochemistry (3rd Edition) by Garrett and Grisham  acad.erskine.edu/facultyweb/smith/ .../Powerpoints/HortonCH1.ppt  www.passovoy.com/biology/Bioche mistry-Biomolecules.ppt