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Synthesis, Crystal and Molecular Structure Studies of a new Pyrazole compound
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1.
International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 04 Issue: 09 | Sep -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 560 Synthesis, Crystal and Molecular Structure Studies of a new pyrazole compound V. M. Sunitha1, S. Naveen2, H. R. Manjunath3, N.K. Loknath4, V. Manivannan5 1 Department of Physics, Prist University, Vallam, Thanjavur 613 403, India 2 Institution of Excellence, University of Mysore, Manasagangotri, Mysore 570 006, India 3 Department of Physics, Acharya Institute of Technology, Bangalore 4 Department of Studies in Physics, University of Mysore, Mysuru 570 006, India 5 Director (R & D) Retd, PRIST University, Thanjavur 613 403, India ---------------------------------------------------------------------***-------------------------------------------------------------------- Abstract - The title molecule C10 H9 N2 O,(3-methyl-1phenyl- 4,5-dihydro-1H-pyrazol-5-one)categorisedundertheménage of pyrazole is acquired and crystallized to obtain crystals suitable for x-ray diffraction at 296K. X-ray diffractionstudies established that the compound is crystallized with two independent molecules in its asymmetric unit under primitive monoclinic system in P21/c space group. The unit cell parameters are a = 10.2163(4) Ǻ , b = 11.1084(4) Ǻ, c = 15.6924(6)Ǻ , and β= 95.441(1)˚ with Z=8. The R-factor converged to 0.0426 for 2907 reflections. The pyrazole ring in each molecule is wrapped by a phenyl ring, a methyl group and a keto group. The crystal packing is mainly due to inter molecular hydrogen bonds of type C-H… O and the C-H…π bonds linking the molecules. The bond length, bond angles, torsion angles and plane orientations of the moieties in the molecule are discussed. Key Words: X-ray, hydrogen bond, monoclinic,pyrazole, crystal structure 1. INTRODUCTION Pyrazole , also known as azole is identified to be an heterocyclic compound wrapped by three carbonatoms and two adjacent nitrogen atoms.[1]Heterocyclic compounds are generally known for their significanceinthe pharmaceutical industry in line with new drug development, withmorethan 50% of the drugs and organic compounds holding these compounds as one of its substituents.[2] Molecules containing core pyrazole unit is of great demand in various fields like medicinal chemistry, pharmacy , agro-chemical industries and even more [3]. The compoundthatcaughtthe attention of scientists are synthesized and discussed for various astonishing properties. Thesesynthesized pyrazoles when altered with different substituents, can do wonders with overwhelming biological activities like anti-bacterial [4], anti-inflammatory [5], anti-tumor [6], anti-fungal [7], anti-microbial [8], anti-cancer [9] etc., These pyrazole containing derivatives also find application as insecticides [10] and herbicides[11] in agrochemical industry. Substituted pyrazoles are reported to possess some important photophysical properties that canbeemployedin organic light-emitting diode fabrication [12] and also as fluorescent agents [13]. Keeping in mind, the multifarious activities of this heterocyclic scaffold we herein report the synthesis and characterization of the title compound. Figure - : Schematic diagram of the molecule 2. MATERIALS AND METHODS 2.1 Synthesis and Crystallization: The title compound was synthesized as per the procedure described earlier [14]. Ethyl aceto acetate (0.1mol) and (0.1 mol) phenyl hydrazine is mixed together in a large evaporating dish .The mixture is then heated on a boiling water bath in the fume cupboard for about 2 hrs while stirring continuously. The obtained heavy reddish syrup is allowed to cool for a while and 200ml of ether is added to it. The solidified mixture is then filtered and washed thoroughly with ether to remove colored impurity and is recrystallized from hot water. 2.2 Data Collection The colorless single crystal block of the title compound whose dimensions are 0.25 x 0.26 x 0.28 mm is subjectedfor
2.
International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 04 Issue: 09 | Sep -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 561 an X-ray diffraction study. X-ray intensity data were collected for the title compound at temperature 296K on a Bruker X8 Proteum diffracto- meter using CuKα radiation of wavelength 1.54178 Å. X-ray diffraction studies revealed that the compound is crystallized in primitive monoclinic crystal system in P21/c space group. Complete data set is processed using SAINT [15]. The structureissolved bydirect methods and refined by full-matrix least squares method on F2 using SHELXS -97 and SHELXL-97[16] programs. All the non-hydrogen atoms were revealed in the first difference fourier map itself. After several cyclesofrefinement,thefinal difference fourier map showed peaks of no chemical significance and the residual is saturated. The geometrical calculations were carried out using the program PLATON.The details of the crystal structure and data refinement are given in Table 1. The list of bond lengths and bond angles of the non-hydrogen atoms are given in Table 2 and 3. Figure- 2 represents the ORTEP of the molecule with thermal ellipsoids drawn at 50% probability. Figure – 2 : ORTEP diagram of the molecule (Drawn at 50% probability level) 2.3 Results and Discussion Bond lengths and bond angles listed in Table-2 and Table-3 abides well with the standard values and is comparableto 5- Ethyl-4-phenyl-1H-pyrazol-3(2H)-one [17]. The moleculeis almost planar with 2 independent molecules in its asymmetric unit. The central pyrazole core in each molecule is encased by a phenyl ring, a methyl group anda ketogroup. The pyrazole ring is affected by π conjugation which is confirmed by the aberration observed in the bond length that form the ring structure 1.387(2)Å of N1-N2, 1.351(2)Å of N2-C3, 1.368(2)Å of C3-C5, 1.411(2) Å of C5-C6, 1.385(2) Å of C6-N1 . Likewise, The fluctuations in the bond length 1.486(2)Å of (C3-C4) and 1.492(2) Å of (C16-C17 ) of the methyl group from the standard value is attributed to sp3 hybridization. The dihedral angle between the pyrazole ring (N1/N2-C3- C5-C6) and the attached phenyl ring (C8-C13) is 22.04(19) for one of the molecule whereas the dihedral angle between the pyrazole ring (N14/N15-C16-C18-C19)andtheattached phenyl ring (C21-C26) is 32.21(9) for the other. The bond length 1.266(2) Å of C6-O7and 1.328(2)ÅofC19-O20shows double-bond character which can be attributed to the formation of keto group. The methyl groups in both the molecule lies in the plane of the pyrazole ring . The C=O group in both the molecules adopts +antiperiplanar conformation (+ap) as indicated by the torsion angle 178.5(2) for the atoms (O7-C6-C5-C3)and179.6(2)forthe atoms (O20-C18-C19-C16) correspondingly. The structure exhibits intermolecular hydrogen bonds of the type C-H…O shown by C24-H12…O20 with length of 3.480(2) Å and an angle of 159 whose symmetry codes are [-x, 1/ 2+y, 1/2-z ].The molecule is also stabilized by the C-H…π interactions. Table – 1: Crystal data and structure refinement table Table – 2: Bond Lengths [Å] for Non-Hydrogen atoms Atoms Length Atoms Length O7-C6 1.265(2) C6-C5 1.411(2) O20-C19 1.325(1) C3-C5 1.368(2) N1-N2 1.383(1) C3-C4 1.486(2) N1-C6 1.387(2) C21-C22 1.391(2) N1-C8 1.418(2) C16-C18 1.406(2) N2-C3 1.346(2) C16-C17 1.492(2) N14-C19 1.365(2) C18-C19 1.379(2) N14-N15 1.378(1) N15-C16 1.327(2) N14-C21 1.420(2) Empirical Formula C10 H9 N2 O Formula Weight 173.19 Temperature 296 K Wavelength 1.54178 Ǻ Crystal System Monoclinic Space group P21/c Cell dimensions a = 10.2163(4) Ǻ b = 11.1084(4) Ǻ c = 15.6924(6) Ǻ β = 95.441(1)˚ Volume 1772.86(12) Ǻ3 Z 8 Density 1.298 g/cm3 F000 728 Crystal Size 0.25 x 0.26 x 0.28 mm Theta range for data collection 4.3˚ to 64.4 ˚ Index ranges -11 ≤ h ≤ 11 -11 ≤ k ≤ 12 -18 ≤ l ≤ 17 Independent reflections 2907 [ R(int) =0.039 ] Absorption correction None Refinement method Full-matrix least- squares on F2 Data / restraints / parameters 2907 / 00 /237 Goodness-of-fit on F2 1.07 Final R indices [I > 2σ (I)] R1 = 0.0426, ωR2 = 0.1145 Largest diff. peak and hole -0.23 e. Ǻ-3 and 0.82 e. Ǻ-3
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International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 04 Issue: 09 | Sep -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 562 Table – 3: Bond Angels [] for Non-Hydrogen atoms Table – 4: Torsion Angels [] for Non-Hydrogen atoms Atoms Torsions Atoms Torsions C10 -C11 -C12 -C13 0.7(3) C21 -N14 -N15 -C16 179.8(1) C12 -C11 -C10 -C9 0.4(3) C19 -N14 -N15 -C16 -0.1(2) C11 -C12 -C13 -C8 -1.4(3) N15 -N14 -C19 -O20 -179.7(1) C8 -N1 -N2 -C3 -173.8(1) N15 -N14 -C19 -C18 0.6(2) N2 -N1- C6 -O7 -176.3(1) C21- N14 -C19 -O20 0.4(2) N2 -N1 -C6 -C5 2.8(2) C21 -N14 -C19 -C18 -179.4(1) C8 -N1 -C6 -O7 -8.0(2) N14 -N15 -C16 -C17 178.0(1) C8- N1 -C6 -C5 171.2(1) N14 -N15 -C16 -C18 -0.4(2) N1 -N2 -C3 -C4 -176.9(1) C23 -C24 -C25 -C26 0.3(3) N1- N2 -C3 -C5 3.7(2) C25 -C24 -C23 -C22 -1.6(3) C12- C13- C8- N1 -178.5(1) C24 -C25 -C26 -C21 1.6(2) C12 -C13 -C8 C9 1.1(2) C25 -C26 -C21 -N14 176.1(1) N1 -C8 -C9 -C10 179.6(1) N14 -C21 -C22 -C23 -177.3(1) C13 -C8 -C9 -C10 -0.0(2) C26 -C21 -C22 -C23 1.1(2) N2 -C3- C5 -C6 -2.0(2) N15 -C16 -C18 -C19 0.7(2) C4 -C3 -C5 -C6 178.8(2) C17 -C16 -C18 -C19 -177.5(2) C11 -C10- C9- C8 -0.7(3) C24 -C23- C22 -C21 0.9(2) O7 -C6 -C5 -C3 178.5(2) C16 -C18 -C19 -O20 179.6(2) C16 -C18 -C19 -N14 -0.7(2) Table – 4: Hydrogen bond geometry [Å and ] D-H…A D-H(Å) H…A(Å) D…A(Å) DHA(°) C9-H4…O7 0.93 2.37 2.920(2) 118 C24-H12…O20 (i) 0.93 2.60 3.480(2) 159 C22-H20…O20 0.93 2.43 2.930(2) 114 Symmetry codes: [-x, 1/ 2+y, 1/2-z] 3. CONCLUSIONS The essentiality of the heterocyclic compounds in pharmaceutical industry, medicinal chemistry, pesticide chemistry, agrochemical industryetc.,hasheightenedfor the reason that it displays favorable biological features. Usually, the compounds like pyrazole framed out of this heterocyclic skeleton exhibit variegated biological activities like anti- microbial, antimalarial, antitubercular, anticancer, anti- inflammatory, antidepressant, antitumour, and antihistaminic agents. This paper reveals the synthesis and characterization of 3-methyl-1-phenyl-4,5-dihydro-1H- pyrazol-5-one a new pyrazole compound. The structure details are obtained using single crystal X-ray diffraction studies and optimized geometrical parameters are close to the experimental bond lengths and angles. ACKNOWLEDGEMENT The authors thank the Institution of Excellence, Vijnana Bhavana, University of Mysore, Mysuru for providing the Single-crystal X-ray diffractometer facility. REFERENCES [1] T. Eicher and S. Hauptmann, “The Chemistry of Heterocycles: Structure, Reactions, Syntheses and Applications,“2nded. Wiley-VCH.ISBN 3-527-30720-6 , 2003. [2] M.S. Saini , A. Kumar , J. Dwivedi J, R. Singh,” A review: Biological significances of heterocycliccompounds,”Int J PharmaSci Res 4: 66-77, 2013. [3] Samet Mert, Rahmi Kasımoğulları and Salim Ok, “ A Short Review on Pyrazole Derivatives and their Applications ,” Journal ofPostdoctoral Research, 64–72, 2014. [4] J. L. Jr Kane, B.H. Hirth, D. Laing, B.B. Gourlie, S. Nahill and G. Barsomian, Bioorg. Med. Chem. Lett. 13, 4463–4466, 2003. [5] Khalid Karrouchi, Laila Chemlal, Latifa Doudach, Jamal Taoufik, Yahia Cherrah, Smaail Radi, My El Abbes Faouzi and M’hammed Ansar,” Synthesis, anti-inflammatory and antioxidant activities of some new pyrazole derivatives,” Journal of Pharmacy Research 8(8), 1171-1177, 2014. [6] Y. Xia, Z.W. Dong, B.X. Zhao, X. Ge, N. Meng, D.S. Shin, J.Y. Miao, Bioorg. Med. Chem., 15(22), 6893-9, 2007. [7 ] Peng Lei, Xuebo Zhang, Yan Xu, Gaofei Xu, Xili Liu, Xinling Yang, Xiaohe Zhang and Yun Ling,” Synthesis and fungicidal activity of pyrazole derivatives containing1,2,3,4-tetrahydroquinoline,” Chemistry Central Journal , 10:40 ,2016. [8] R. Mallikarjuna Rao, G. Nagaraja Reddy, J. Sreeramulu, “ Synthesis of some new pyrazolo- pyrazole derivatives containing indoles with antimicrobial activity,” Der Pharma Chemica, 3 (5):301-309,2011. [9] H.D.H . Showalter, J.L. Johnson, L.M .Werbel, W.R. Leopold, R.C. Jackson, E.F. Elslager, 5- [(Aminoalkyl)amino]-substituted anthra[1,9- cd]pyrazol-6(2H)-ones as novel anticancer agents, J. Med. Chem. , 27, 253-255,1984. [10] C.K. Chu, J.Cutler, J. Heterocyclic Chem., 23, 289- 319,1986. Atoms Angle Atoms Angle N2-N1-C6 108.5(1) O7-C6-N1 122.0(1) N2-N1-C8 120.4(1) O7-C6-C5 132.0(1) C6-N1-C8 129.9(1) N1-C6-C5 105.8(1) C3-N2-N1 108.1(1) C3-C5-C6 107.8(1) C19-N14- N15 110.3(1) C22-C21-N14 120.6(1) C19-N14- C21 129.8(1) C26-C21-N14 118.8(1) N15-N14- C21 119.7(1) N15-C16-C18 111.0(1) C16-N15- N14 105.8(1) N15-C16-C17 120.2(1) C13-C8-N1 119.7(1) C18-C16-C17 128.7(1) C9-C8-N1 120.0(1) C19-C18-C16 105.5(1) N2-C3-C5 109.3(1) O20-C19-N14 120.0(1) N2-C3-C4 119.6(1) O20-C19-C18 132.7(1) C5-C3-C4 131.0(1) N14-C19-C18 107.2(1)
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International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395-0056 Volume: 04 Issue: 09 | Sep -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 563 [11] Wu QL, Li YQ, Yang XL, Ling Y ,” Facile total synthesis and bioactivity of aspernigerin ,” Chin J Org Chem, 32:1498–1502,2012. [12] E. Gondek, I.V. Kityk, J. Sanetra, P. Szlachcic, P. Armatys, A. Wisla and A. Danel, Opt. Laser Technol. 38, 487–492, 2006. [13] Z.Y. Lu, W.G. Zhu, Q. Jiang and M.G. Xie, Chin. Chem. Lett. 10, 679–682, 1999. [14] K. S. Girisha, B. Kalluraya, V. Narayana and Padmashree, Eur. J. Med. Chem. 45, 4640–4644, 2010. [15] Bruker , APEX2, SAINT ,SADABS, Bruker AXS Inc.,Madison, Wisconsin, USA, 2013. [16] G. M. Sheldrick , Acta Cryst., A64, 112–122, 2008. [17] Wan-Sin Loh, Hoong-Kun Fun, R. Venkat Ragavan,V. Vijayakumar and M. Venkatesh, Acta Cryst., E67, o403–o404,2011
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