Efficient spin-up of Earth System Models usingsequence acceleration
Sigma xi powerpoint
1. C A R S O N P O L T O R A C K
D R . G R A C I E L A L O R C A
U N I V E R S I T Y O F F L O R I D A , D E P A R T M E N T O F
M I C R O B I O L O G Y
Plantibiotics:
Phytotoxicity and Detection of ‘Compound A’ and
‘Compound B’ application for treatment of Citrus
Greening Disease in the Valencia Orange
2. Background
Citrus Greening Disease (CGD)
Disease phenotype- mottled leaves; unhealthy branches/shoots; premature tree death;
lopsided, low quality, low yield fruit
Mechanism: callose deposition blocks phloem sieve pores, deprives plant of nutrients
Tremendous economic threat to Florida
Citrus is a $9B industry, providing 76,000 jobs
Between ‘06-’12, $4.5B cost to industry, destroying 8,000 jobs
Candidatus Liberibacter asiaticus
Vectored by Asian Citrus Psyllid
Unculturable
Phloem-limited: exposed to high degree of osmotic stress
‘Compound B’
ldtP= L,D transpeptidase, peptidoglycan cross-linkage/cell wall remodeling in response to
osmotic stress
CPD B stabilizes and inactivates ldtR, a transcriptional activator of ldtP
‘Compound A’
Disrupts RNA Polymerase Bridging via CarD
3. Purpose
Assay toxic doses of drugs to determine max treatment
dose
Detect drugs in plant tissue to determine how it is
trafficked around plant
Examine the pharmacokinetic relationship between drug
and plant
Adapt ‘Compound A’ and/or ‘Compound B’ for
commercial usage as a CGD treatment
4. Methods
Phytotoxicity Assay
128 uninfected, immature Valencia Orange trees
16 treatment groups
8 groups per drug
3 concentrations + 1 buffer control (1, 10, 100 uM)
Buffer used to solubilize each drug contained DMSO an dTris
pH 8
2 different exposure mechanisms (poured on roots, sprayed on
leaves)
Dosage administered at a single time
Octuplicates
Data analyzed via ANOVA
5. Methods
Reverse Phase High Pressure Liquid
Chromatography
Cut out midrib from untreated leaf samples, lyophilize, grind
to powder
Extract organic phase via ethyl acetate, dry, resuspend residue
in desired fashion
Inject into HPLC machine
Mobile phase A: 300:700:5 acetonitrile:water:acetic acid
Mobile phase B: 800:200:5 acetonitrile:water:acetic acid
Ran using isocratic gradient; T=0, 80% A, 20% B/T=30 min,
100% B; detection at 313 nm
6. Phytotoxicity Assay Raw Data
Root Treatment Mean % Growth Standard Deviation
Buffer Control Roots 2.90% 5.33
CPD B 100 Roots -1.43% 0.520
CPD B 10 Roots 2.03% 4.79
CPD B 1 Roots 3.33% 5.94
CPD A 100 Roots 0.989% 1.84
CPD A 10 Roots 0.170% 1.69
CPD A 1 Roots 2.40% 3.96
Leaf Treatment Mean % Growth Standard Deviation
Buffer Control Spray 3.77% 6.57
CPD B 100 Spray 1.63% 4.11
CPD B 10 Spray 5.38% 7.48
CPD B 1 Spray 1.35% 2.55
CPD A 100 Spray 8.43% 10.1
CPD A 10 Spray 1.75% 4.33
CPD A 1 Spray 9.57% 9.79
7. Phytotoxicity Assay
Data in the bar graph are expressed as mean percent
change in growth from time of exposure to time of
measurement. A higher bar signifies lesser toxicity
(more growth) and a lower bar signifies greater
toxicity (less growth).
8. Phytotoxicity Assay Results: Drug Comparison
100 uM B>Control p=.034
10 uM A>Control p=.146
100 uM B>A p=.003
10 uM A>B p=.317
10. Phytotoxicity Discussion
It was impossible to determine which drug was less
toxic overall, as each exhibited a different
concentration-dependent pattern of toxicity
Max toxicity
Compound A: 10 uM
Compound B: 100 uM
Taken individually, the data are still valuable
Given the degree of growth inhibition I saw, an
appropriate and tolerable dosage probably lies
between 10 and 100 uM for CPD B
13. Phytotoxicity Discussion
When drug type and concentration are held
constant, the toxicity can be used as a proxy for
determining drug absorption into the plant.
I uniformly observed at the 10 and 100 uM
concentrations that root exposure caused greater
toxicity than leaf exposure, meaning root exposure
caused greater uptake of the drug into the plant.
17. HPLC Discussion
First, I wanted to see what a baseline chromatogram of
just plant material looked like (Plant+H20)
Then, I wanted to see if either of the solubility buffers
could be detected from a sample of plant material
(Plant+DMSO+Tris pH 8)
The first two chromatograms are nearly identical, signaling that the
buffers eluted when the plant material eluted out
Could NOT detect the presence of these buffers (this was a good
thing)
Finally, I spiked the prior sample with 100 uM CPD B
Peak at 26 minutes suggests this protocol was successful in detecting
CPD B from a sample of plant material
18. Overall Discussion/Future Direction
Phytotoxicity
100 uM toxic, but not possibly not too toxic
Longer period of observation necessary
1 uM nontoxic, but possibly would not be effective
Pair toxicity data with efficacy data to determine dosage
When comparing treatment mechanisms, toxicity is a proxy for drug
absorption
Roots more toxic=absorbed better
HPLC
Able to detect CPD B in a sample of extracted plant material
Future: process phytotoxicity plants and detect CPD B without spiking
the samples; later, treat infected plants to determine differences in drug
movement due to pore blockage
Detection of CPD A could not be completed due to complications with
synthesis of an affinity column
19. References
Wang N, Trivedi, P. (2013) Citrus Huanglongbing: A Newly Relevant
Disease Presents Unprecedented Challenges. Phytopathology 103(7):652-
665.
Pagliai FA, Gardner CL, Bojilova L, Sarnegrim A, Tamayo C, et al. (2014)
The Transcriptional Activator LdtR from ‘Candidatus Liberibacter
asiaticus’ Mediates Osmotic Stress Tolerance. PLoS Pathog 10(4):
e1004101.
Kim JS, Sagaram US, Burns JK, Li JL, Wang N. (2009) Response of Sweet
Orange (Citrus sinensis) to ‘Candidatus Liberibacter asiaticus’ Infection:
Microscopy and Microarray Analyses. Phytopathology 99(1):50-7.
Hodges AW, Spreen TH. (2012) Economic Impacts of Citrus Greening
(HLB) in Florida, 2006/07–2010/11. Food and Resource Economics
Department, University of Florida EDIS FE903.
Koh, E. J., Zhou, L., Williams, D. S., Park, J., Ding, N., Duan, Y. P., and
Kang, B. H. 2011. Callose deposition in the phloem plasmodesmata and
inhibition of phloem transport in citrus leaves infected with ‘Candidatus
Liberibacter asiaticus’. Protoplasma 249:687-697.