X-ray crystallography is a technique used to determine the atomic structure of crystals. It involves firing X-rays at a crystal and measuring the scattering pattern, which can reveal the positions of atoms within the crystal. Key apparatus include an X-ray source, filters and monochromators to produce a single wavelength beam, a diffractometer to rotate the crystal and detector, and an X-ray detector. The procedure involves growing crystals, collecting diffraction data, solving the crystal structure through methods like molecular replacement, and refining the structural model. X-ray crystallography is used to study biological molecules and materials that form crystals.
X ray crystallography and X ray DiffractionFaisal Hussain
This is the short description about x ray crystallography.
simplest and easy to understand.
Procedure of X ray Diffraction.
Advantages and Disadvantages of X ray Crystallography
X-Ray Crystallography is a technique used to determine the atomic and molecular structure of a crystal, in which the crystalline atoms cause a beam of incident X-rays to diffract into many specific directions.
X ray crystallography and X ray DiffractionFaisal Hussain
This is the short description about x ray crystallography.
simplest and easy to understand.
Procedure of X ray Diffraction.
Advantages and Disadvantages of X ray Crystallography
X-Ray Crystallography is a technique used to determine the atomic and molecular structure of a crystal, in which the crystalline atoms cause a beam of incident X-rays to diffract into many specific directions.
X-ray crystallography is a technique used for determining the atomic and molecular structure of a crystal, in which the crystalline atoms cause a beam of incident X-rays to diffract into many specific directions.
X ray, invisible, highly penetrating electromagnetic radiation of much shorter wavelength (higher frequency) than visible light. The wavelength range for X rays is from about 10-8 m to about 10-11 m, the corresponding frequency range is from about 3 × 1016 Hz to about 3 × 1019 Hz.
ION EXCHANGE CHROMATOGRAPHY
ByM.Vharshini
B.Sc. Bio Medical Science
Sri Ramachandra University
ION EXCHANGE CHROMATOGRAPHY
Ion-exchange chromatography is a process that allows the separation of ions and polar molecules based on their affinity to the ion exchanger.
It can be used for almost any kind of charged molecule including large proteins, small nucleotides and amino acids.
Cations or Anions can be separated using this method.
PRINCIPLE
It is based on the reversible electrostatic interaction of ions with the separation matrix (i.e.)
The separation occurs by reversible exchange of ions between the ions present in the solution and those present in the ion exchange resin.
CLASSIFICATION OF RESINS
According to the chemical nature they classified as-
1. Strong cation exchange resin
2. Weak cation exchange resin
3. Strong anion exchange resin
4. Weak anion exchange resin
According to the Source they can -
Natural resins : Cation - Zeolytes, Clay
Anion - Dolomite
Synthetic resins: Inorganic & Organic resins
◘Organic resins are polymeric resin matrix.
The resin composed of –
Polystyrene (sites for exchangeable functional groups)
Divinyl benzene(Cross linking agent)-offers stability.
Ion exchange resin should have following requirements
»It must be chemically stable.
»It should be insoluble in common solvents.
» It should have a sufficient degree of cross linking.
»The swollen resin must be denser than water.
»It must contain sufficient no. of ion exchange groups.
Physical properties of ion exchange resins
Cross linking:
It affects swelling & strength & solubility
Swelling:
When resin swells, polymer chain spreads apart
Polar solvents → swelling
Non-polar solvents → contraction
Swelling also affected electrolyte concentration.
Particle size and porosity
Increase in surface area & decrease in particle size will increase the rate of ion exchange.
Regeneration
Cation exchange resin are regenerated by treatment with acid, then washing with water.
Anion exchange resin are regenerated by treatment with NaOH, then washing with water until neutral.
EXPERIMENTAL SETUP OF ION EXCHANGE CHROMATOGRAPHY
Metrohm 850 Ion chromatography system
Instrumentation of ion exchange chromatography
PRACTICAL REQUIREMENTS
1.Column
» glass, stainless steel or polymers
2.Packing the column
» Wet packing method:
A slurry is prepared of the eluent with the stationary phase powder and then carefully poured into the column. Care must be taken to avoid air bubbles.
3.Application of the sample
After packing, sample is added to the top of the stationary phase, use syringe or pipette.
This layer is usually topped with a small layer of sand or with cotton or glass wool to protect the shape of the organic layer from the velocity of newly added eluent.
4.Mobile phase
Acids, alkalis, buffers…
6.Stationary phase
The ionic
It would be use full to All Needy People. It involve information about NMR Spectroscopy ( a spectroscopic techniques), factors influencing , proton NMR and their applications of NMR as well as Nuclear magnetic imaging.
X-ray crystallography is a technique used for determining the atomic and molecular structure of a crystal, in which the crystalline atoms cause a beam of incident X-rays to diffract into many specific directions.
X ray, invisible, highly penetrating electromagnetic radiation of much shorter wavelength (higher frequency) than visible light. The wavelength range for X rays is from about 10-8 m to about 10-11 m, the corresponding frequency range is from about 3 × 1016 Hz to about 3 × 1019 Hz.
ION EXCHANGE CHROMATOGRAPHY
ByM.Vharshini
B.Sc. Bio Medical Science
Sri Ramachandra University
ION EXCHANGE CHROMATOGRAPHY
Ion-exchange chromatography is a process that allows the separation of ions and polar molecules based on their affinity to the ion exchanger.
It can be used for almost any kind of charged molecule including large proteins, small nucleotides and amino acids.
Cations or Anions can be separated using this method.
PRINCIPLE
It is based on the reversible electrostatic interaction of ions with the separation matrix (i.e.)
The separation occurs by reversible exchange of ions between the ions present in the solution and those present in the ion exchange resin.
CLASSIFICATION OF RESINS
According to the chemical nature they classified as-
1. Strong cation exchange resin
2. Weak cation exchange resin
3. Strong anion exchange resin
4. Weak anion exchange resin
According to the Source they can -
Natural resins : Cation - Zeolytes, Clay
Anion - Dolomite
Synthetic resins: Inorganic & Organic resins
◘Organic resins are polymeric resin matrix.
The resin composed of –
Polystyrene (sites for exchangeable functional groups)
Divinyl benzene(Cross linking agent)-offers stability.
Ion exchange resin should have following requirements
»It must be chemically stable.
»It should be insoluble in common solvents.
» It should have a sufficient degree of cross linking.
»The swollen resin must be denser than water.
»It must contain sufficient no. of ion exchange groups.
Physical properties of ion exchange resins
Cross linking:
It affects swelling & strength & solubility
Swelling:
When resin swells, polymer chain spreads apart
Polar solvents → swelling
Non-polar solvents → contraction
Swelling also affected electrolyte concentration.
Particle size and porosity
Increase in surface area & decrease in particle size will increase the rate of ion exchange.
Regeneration
Cation exchange resin are regenerated by treatment with acid, then washing with water.
Anion exchange resin are regenerated by treatment with NaOH, then washing with water until neutral.
EXPERIMENTAL SETUP OF ION EXCHANGE CHROMATOGRAPHY
Metrohm 850 Ion chromatography system
Instrumentation of ion exchange chromatography
PRACTICAL REQUIREMENTS
1.Column
» glass, stainless steel or polymers
2.Packing the column
» Wet packing method:
A slurry is prepared of the eluent with the stationary phase powder and then carefully poured into the column. Care must be taken to avoid air bubbles.
3.Application of the sample
After packing, sample is added to the top of the stationary phase, use syringe or pipette.
This layer is usually topped with a small layer of sand or with cotton or glass wool to protect the shape of the organic layer from the velocity of newly added eluent.
4.Mobile phase
Acids, alkalis, buffers…
6.Stationary phase
The ionic
It would be use full to All Needy People. It involve information about NMR Spectroscopy ( a spectroscopic techniques), factors influencing , proton NMR and their applications of NMR as well as Nuclear magnetic imaging.
X-ray Crystallography is a scientific method used to determine the arrangement of atoms of a crystalline solid in three dimension. It is based on x ray diffraction. Reveals structure of a crystal at atomic level.
X-ray crystallography is the experimental science determining the atomic and molecular structure of a crystal, in which the crystalline structure causes a beam of incident X-rays to diffract into many specific directions. By measuring the angles and intensities of these diffracted beams, a crystallographer can produce a three-dimensional picture of the density of electrons within the crystal. From this electron density, the mean positions of the atoms in the crystal can be determined, as well as their chemical bonds, their crystallographic disorder, and various other information.
X ray crystallography and X ray DiffractionFaisal Hussain
This is the short description about x ray crystallography.
simplest and easy to understand.
Procedure of X ray Diffraction.
Pros and Cons of X ray Crystallography
X ray crystallography to visualize protein structure.Ritam38
This ppt discusses in detail the process of X ray Crystallography.
Made by the following 3rd year Bs-Ms students of IISER Kolkata:
B Sri Sindhu
Rasiwala Hassan Shabbir
Ritam Samanta
Himanshu Gupta
Sakshi Ajay Shrisath
Aditya Borkar
Diana Denzil Fernandez
Neha Kumari
.Sowmya
Anjali Mohan
Debanjana Mondal
Aanandita Gope
Shruti Santosh Sail
X-ray diffraction (XRD) is a versatile non-destructive analytical technique used to analyze physical properties such as phase composition, crystal structure and orientation of powder, solid and liquid samples. Many materials are made up of tiny crystallites. The chemical composition and structural type of these crystals is called their 'phase'. Materials can be single phase or multiphase mixtures and may contain crystalline and non-crystalline components. In an X-ray diffractometer, different crystalline phases give different diffraction patterns. Phase identification can be performed by comparing X-ray diffraction patterns obtained from unknown samples to patterns in reference databases.
principles:
X-Ray Diffraction is the result of constructive interference between X-rays and a crystalline sample. The wavelength of the X-rays used is of the same order of magnitude of the distance between the atoms in a crystalline lattice. This gives rise to a diffraction pattern that can be analysed in a number of ways, the most popular being applying the famous Bragg’s Law (nλ=2d sin θ) which is used in the measurement of crystals and their phases.
Applictions:
Many researchers, in industrial as well as in scientific laboratories, rely on X-ray diffraction (XRD) as a tool to develop new materials or to improve production efficiency. Innovations in X-ray diffraction closely follow the research on new materials, such as in semiconductor technologies or pharmaceutical investigations. Industrial research is directed toward the ever-increasing speed and efficiency of production processes. Fully automated X-ray diffraction analyses in mining and building materials production sites result in more cost-effective solutions for production control.
The main uses of X-ray diffraction are:
Qualitative and quantitative phase analysis of pure substances and mixtures. The most common method for phase analysis is often called 'X-ray powder diffraction' (XRPD).
PROJECT ON WASTE WATER TREATMENT AND ENERGY PRODUCTION FROM SLUDGE AND SOLID ...AYESHA KABEER
*PROJECT ON WASTE WATER TREATMENT AND ENERGY PRODUCTION FROM SLUDGE AND SOLID WASTE
1. OVERALL PROCEDURE OF WASTE WATER TREATMENT
2. ENERGY PRODUCTION FORM SLUDGE
3. ENERGY PRODUCTION FROM SOLID WASTE
*PROJECT ON LUCIFERASE GENE CLONING
1. SUITABLE VECTOR
2. RESTRICTION ENZYMES ALONG WITH THEIR RESTRICTION SITES
3. CLONING PROCESS
4. EXPRESSION
5. PGL-2 CONTROL VECTOR DIAGRAM
6. COMPARISON OF VECTOR IN MORE THAN ONE HOST
7. NEW INNOVATIVE IDEA FOR CLONING
8. CONCLUSION
9. SUMMARY
FERMENTATION: TECHNIQUE USED FOR THE PRODUCTION OF FOOD BY MICROBESAYESHA KABEER
1. INTRODUCTION TO ALCOHOLIC FERMENTATION AND PRODUCTS OBTAINED FROM ALCOHOLIC FERMENTATION
2. INTRODUCTION TO LACTIC ACID FERMENTATION AND PRODUCTS OBTAINED FROM LACTIC ACID FERMENTATION
CHROMATOGRAPHY
1. INTRODUCTION
2. PRINCIPLE
3. TYPES OF CHROMATOGRAPHY
a. paper chromatography
i. principle
ii. procedure
iii. Rf value
b. affinity chromatography
c. ion exchange chromatography
d. size exclusion chromatography
e. hydrophobic interaction chromatography
INTRODUCTION TO HYDROPONICS ( OVERVIEW)AYESHA KABEER
HYDROPONICS:
1. DEFINITION
2. HYDROPONICS ON THE BASIS OF WATER FLOW
3. HYDROPONICS ON THE BASIS OF DISPOSAL OF NUTRIENTS
4. HYDROPONICS ON THE BASIS OF MEDIUM
5. TYPES OF HYDROPONICS SYSTEMS
5.1. Drip Method
5.2. Nutrient Film Technique
5.3. Ebb and Flow
5.4. Deep Water
5.5. Aeroponic
6. HOW TO GERMINATE HYDROPONICS SEEDS
1. Definition
2. History
3. Discrimination of stem cells from other types of cells
4. Types
5. Why stem cells are important
6. Properties
7. Application of stem cells
8. Advantages and disadvantages
Translocation of food in plants
1. Source and sink
2. Pathway of translocation
3. Source-sink relationship/interaction
4. Source-sink pathways follow patterns
5. Materials transported
6. The mechanism of phloem transport
7. The Pressure -Flow Model
8. Phloem loading and unloading
9. Summary
Foreign Policy
Aims of foreign policy of Pakistan
China and Pakistan’s Relations
Relationship’s History of Pakistan and America
India-Pakistan Relations
Kashmir Conflict
Pak-Afghan Relations
PRESENTED BY: AYESHA KABEER
FROM: UNIVERSITY OF GUJRAT SIALKOT SUBCAMPUS
Obesity and Cardiovascular Diseases
1. Causes of Overweight and Obesity
2. Accessing Obesity
-Body Mass Index
3. Cardiovascular Diseases caused by Obesity
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
2. X-RAY CRYSTALLOGRAPHY
INTRODUCTION:
X-ray Crystallography is a scientific method of determining the
precise positions/arrangements of atoms in a crystal where beams of
X-ray strikes a crystal and causes the beam of light to diffract into
many specific directions
OR
X-ray crystallography is a technique used for determining the atomic
and molecular structure of a crystal, in which the crystalline atoms
cause a beam of incident X-rays to diffract into many specific
directions.
5. X-RAY SOURCES
X-rays are produced by accelerating electrons into a metal target
There are several sources of X-rays, such some radioactive materials and
synchrotrons. Synchrotrons produce a significantly higher flux of X-rays and the
wavelength of the radiation may changed, as necessary.
A high-flux source offers many advantages including reduced experimental time
and smaller allowable crystal sizes.
X- RAY CRYSTALLOGRAPHY
APPARATUS:
6. FILTERS, MONOCHROMATORS AND COLLIMATORS
To obtain the best results, the X-ray beam used in the diffraction experiment
should all be of a single wavelength and they should be as parallel as possible.
To accomplish this in practice, we use filters, monochromators and collimators.
The filter is a material that begins to absorb X-rays strongly between the ∝and β.
This allows us to obtain only the ∝ band.
A monochromator is a very stable single crystal that further filters the radiation
to make it as monochromatic as possible.
A collimator is a tube containing smaller tubes (ca. 0.5 mm) that attempts to
reduce the dispersion of the X-ray beam and limits the diameter of the beam.
X- RAY CRYSTALLOGRAPHY
APPARATUS:
7. DIFFRACTOMETER:
A device for rotating the crystal and the detector so that the entire diffraction
pattern can be recorded under the control of a computer.
CRYSTAL:
There are numerous methods to obtain crystals of sufficient size and quality for
X-ray diffraction experiments in which two of them are:
1. Crystallization
2. Sublimation
X- RAY CRYSTALLOGRAPHY
APPARATUS:
8. X-RAY DETECTORS:
X-rays may be detected by a variety of different devices. The major distinction
between detectors is in the number of reflections they are able to collect at a
single time.
1. Point detectors can only collect a single reflection at a given time and, because of
this deficit, are not as useful for routine crystallography.
2. Area detectors can collect many reflections simultaneously and are thus preferred
for routine data collection. Examples of such detectors include CMOS detectors,
photon counters, CCD cameras, Image Plates, multi-wire detectors and even X-
ray film (in the past).
X- RAY CRYSTALLOGRAPHY
APPARATUS:
9. Protein purification
Protein crystallization
o Grow homogeneous single crystals
o Formation of crystal can be done by highly concentrated solution of the protein
and adding reagents to reduce the solubility.
Data collection
o Measure intensities with diffractometer
Structure solution( phasing or phase determination)
o Molecular replacements
o Heavy atom methods
Structure determination (model building and refinement)
o Resolution
X- RAY CRYSTALLOGRAPHY
PROCEDURE:
11. The method revealed the structure and function of many biological molecules,
including vitamins, drugs, proteins and nucleic acids such as DNA.
Used to study many materials which form crystals like salts, metals, minerals,
semiconductors, as well as various inorganic, organic and biological molecules.
Determine electron density, the mean positions of the atoms in the crystal, their
chemical bonds, their disorder and various other information.
X- RAY CRYSTALLOGRAPHY
USES:
12. X-Ray crystallography allows researchers today to see how certain
factors may effect protein structure
Allows researchers today to see how secondary protein structures in
protein residues can fold depending on different environmental factors
X- RAY CRYSTALLOGRAPHY
CONCLUSIONS: