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DEPT. PHARMACEUTICAL CHEMISTRY
1
Presented to,
Dr. S. D. joshi,
Dept of pharmaceutical CHEMISTRY,
SET’s College of Pharmacy,
Dharwad
From,
Sanjay Gopi
Dept of Pharmaceutical Chemistry
SET’s College of pharmacy
Dharwad.
CONTENTS :CONTENTS :
 Xanthine oxidase inhibitors
 Cystochrome P-450 inhibitors
 DHFR Inhibitors
 Gastric proton pump inhibitors
DEPT. PHARMACEUTICAL CHEMISTRY 2
XANTHINE OXIDASE :
 The enzyme xanthine oxidase (bovine milk enzyme) catalysis the oxidation of
Hypoxanthine to xanthine & xanthine to uric acid.
DEPT. PHARMACEUTICAL CHEMISTRY 3
Example : 3-mthyl xanthine
DEPT. PHARMACEUTICAL CHEMISTRY 4
Mechanism :
 The active site of XO is composed of a molybdopterin unit with the
molybdenum atom also coordinated by terminal oxygen (oxo), sulfur atoms and a
terminal hydroxide.
 In the reaction with xanthine to form uric acid, an oxygen atom is transferred
from molybdenum to xanthine, whereby several intermediates are assumed to be
involved.
 The reformation of the active molybdenum center occurs by the addition of
water.
DEPT. PHARMACEUTICAL CHEMISTRY 5
 During sever liver damage, XO is released into the blood, so blood assy for XO is
a way to determine if liver damage has happned.
 Xanthinuria is a rare genetic disorder where the lack of xanthine oxidase leads
to high concentration of xanthine in blood can cause health problems such as
renal failure.
DEPT. PHARMACEUTICAL CHEMISTRY 6
XANTHINE OXIDASE INHIBITORS :
 Xanthine oxidase inhibitors is any substance that inhibits the activity of xanthine
oxidase.
 Xanthine oxidase inhibitors reduces the production of uric acid.
Xanthine inhibitors are of two types
 Purine analogues & others
 Purine analogues include allopurinol & oxipurinol.
 Others include febuxostat & inositols.
DEPT. PHARMACEUTICAL CHEMISTRY 7
Examples :
allopurinol Oxipurinol
DEPT. PHARMACEUTICAL CHEMISTRY 8
Mechanism of action of allopurinol
 allopurinol is a purine analog, it is a structural isomer of hypoxanthine & is an a
inhibitor of the enzyme xanthine oxidase.
 In addition to the blocking uric acid production inhibitor of xanthine oxidase
causes an increase in hypoxanthine & xanthine.
 While xanthine can not be converted into purine ribotides, hypoxanthine can be
salvaged to purine ribotides adinosine & guanosine monophosphate.
DEPT. PHARMACEUTICAL CHEMISTRY 9
 Increased level of these ribotides may causes feed back inhibition of amido
phosphoribosyl transferase – rate limiting enzyme of purine biosynthesis.
 Allopurinol therfore decreases uric acid formation may also inhibit the purine
synthesis.
DEPT. PHARMACEUTICAL CHEMISTRY 10
CYTOCHROME P450 INHIBITORS
 Cytochrome p450 belongs to the super family of protiens containing a heme
cofactor & therefore are hemoprotines.
 Many drug interactions are result of inhibition or induction of the CYP450
enzymes.
 Enzyme inhibition usually involves competation with another drug for the
enzyme binding site.
DEPT. PHARMACEUTICAL CHEMISTRY 11
Examples :
Ciprofloxacine Isoniazid
DEPT. PHARMACEUTICAL CHEMISTRY 12
Mechanism of action
Ciprofloxacin is a broad spectrum antibiotic active against both Gram-
positive & Gram-negative bacteria.
It functions by inhibiting DNA gyrase, a type 2 topoisomerase, &
topoisomerase 4 , enzymes necessary to separate bacterial DNA there by
inhibiting cell division.
DEPT. PHARMACEUTICAL CHEMISTRY 13
DHFR Enzyme
DHFR enzyme that reduces dihydrofolic acid to tetradhydrofolic folic acid
using NADPH as electron donor, which can be converted to the kinds of
tetrahydrofolate cofactors.
DEPT. PHARMACEUTICAL CHEMISTRY 14
Mechanism
DEPT. PHARMACEUTICAL CHEMISTRY 15
DHFR Inhibitors :
DHFR inhibitor is molecule that inhibits the function of dihydrofolate reductase
& is the type of antifolate.
Examples
Trimthoprim Iclaprim
DEPT. PHARMACEUTICAL CHEMISTRY 16
Mechanism of action :
 Trimethoprim binds to dihydrofolate reductase & inhibits the reduction of
dihydrofolic acid (DHF) to tetrahydrofolic acid (THF).
 THF is an essential precursor in the thymine synthesis pathway & interference
with this pathway inhibits the bacterial DNA synthesis.
DEPT. PHARMACEUTICAL CHEMISTRY 17
 Trimethoprim’s affinity for bacterial dihydrofolate reductase is several thousand
times greater than its affinity for human dihydrofolate reductase
 Sulfamethoxazole inhibits dihydrofolate synthatase an enzyme involved further
upstream in the same pathway
 Trimethoprim & sulfamethoxazole is commonly used in combination due to
claimed synergistic effect & reduced development of resistance.
DEPT. PHARMACEUTICAL CHEMISTRY 18
GASTRIC ACID SECRETION
 Acid secretion is a physiological process of the stomach this acid production is caused by the
highly specialized cell is fundic mucosa, and gastric parietal cells in the stomach.
 This gastric acid will directly or indirectly helps the physiological functions like it will initiates
the activation of the enzyme pepsinogen which is involved in digestive process, it will also kills
bacteria and microbes.
PROTON PUMP( H+
/ K+
-ATPase ENZYME)
1.Structure :
Present in tubulovesicular and canalicular mestric parital cells
Consist of two subunits a114-kDa-α-subunit (10 trance membrane
helix) and 34-kDa-β-subunit (1 trance membrane helix)
α- subunit-catalytic and transport function
β-subunit- required for endocytic retrieval of H+
/ K+
-ATPase
enzyme from the canalicular membrane
DEPT. PHARMACEUTICAL CHEMISTRY 20
DEPT. PHARMACEUTICAL CHEMISTRY 21
STRUCTURE OF PROTON PUMP
DEPT. PHARMACEUTICAL CHEMISTRY 22
PROTON PUMP AND ACID SECRETION.
GASRTIC PROTON PUMP INHIBITORS :
Proton pump inhibitors (or "PPI"s) are a group of drugs whose main action is
pronounced and long-lasting reduction of gastric acid production. They are the
most potent inhibitors of acid secretion available today.
The group followed and has largely superseded another group of pharmaceuticals
with similar effects, but different mode-of-action, called H2-receptor antagonists.
DEPT. PHARMACEUTICAL CHEMISTRY 23
This class of compound inhibit gastric proton pump in a
non competitive manner by covalent binding of their
active intermediate to the enzyme.
Omeprazole
Pentaprasol
DEPT. PHARMACEUTICAL CHEMISTRY 24
O
N
N
S
H N OMe
OMe
O
F
F
H
C
Mode of action:-
 Physico-chemically PPIs (Omeprazole) represent
a weak base with a pka value of 4.
 It can pass through biological membrane as a result
of its lipid permeable properties.
 At physiological pH it is unionized & this neutral
form passes freely across biological membrane.
 However is an acidic environment with a pH below
4,it is protonated. This result in a limited
permeability. Due to unique structure of parietal cell
with its Secrotory Cannaliculi
DEPT. PHARMACEUTICAL CHEMISTRY 25
 PPIs (Omeprazole) is trapped with in these
Cannaliculi & undergoes chemical transformation
into activated Pyridinium Sulfenamide (active
enzyme inhibitor).
 Which bind covalently to sulphydryl groups of
cysteins of the proton pump (H+
/K+
ATPase)
followed by structural alteration of the enzyme
finally inactivates the catalytic function of the
enzyme.
DEPT. PHARMACEUTICAL CHEMISTRY 26
FAQ’S
1)Eplain the process of gastric cid secretion, write an account of developing drug
from lead the inhibition of gastric acid secretion.
2) Discuss mechanism of action of gastric acid secretion & inhibition what are the
drugs used for controlling acid secretion explain their mechanism.
3) Write account on DHFR enzyme inhibitor.
DEPT. PHARMACEUTICAL CHEMISTRY 27
REFERENCES
 Medicinal chemistry by Burger, 4th
edition Pg.no 103-104
 Principles of drug design by Smith Pg.no 17-19
www.google.com
DEPT. PHARMACEUTICAL CHEMISTRY 28
DEPT. PHARMACEUTICAL CHEMISTRY 29
DEPT. PHARMACEUTICAL CHEMISTRY 30

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rational enzyme design

  • 1. DEPT. PHARMACEUTICAL CHEMISTRY 1 Presented to, Dr. S. D. joshi, Dept of pharmaceutical CHEMISTRY, SET’s College of Pharmacy, Dharwad From, Sanjay Gopi Dept of Pharmaceutical Chemistry SET’s College of pharmacy Dharwad.
  • 2. CONTENTS :CONTENTS :  Xanthine oxidase inhibitors  Cystochrome P-450 inhibitors  DHFR Inhibitors  Gastric proton pump inhibitors DEPT. PHARMACEUTICAL CHEMISTRY 2
  • 3. XANTHINE OXIDASE :  The enzyme xanthine oxidase (bovine milk enzyme) catalysis the oxidation of Hypoxanthine to xanthine & xanthine to uric acid. DEPT. PHARMACEUTICAL CHEMISTRY 3
  • 4. Example : 3-mthyl xanthine DEPT. PHARMACEUTICAL CHEMISTRY 4
  • 5. Mechanism :  The active site of XO is composed of a molybdopterin unit with the molybdenum atom also coordinated by terminal oxygen (oxo), sulfur atoms and a terminal hydroxide.  In the reaction with xanthine to form uric acid, an oxygen atom is transferred from molybdenum to xanthine, whereby several intermediates are assumed to be involved.  The reformation of the active molybdenum center occurs by the addition of water. DEPT. PHARMACEUTICAL CHEMISTRY 5
  • 6.  During sever liver damage, XO is released into the blood, so blood assy for XO is a way to determine if liver damage has happned.  Xanthinuria is a rare genetic disorder where the lack of xanthine oxidase leads to high concentration of xanthine in blood can cause health problems such as renal failure. DEPT. PHARMACEUTICAL CHEMISTRY 6
  • 7. XANTHINE OXIDASE INHIBITORS :  Xanthine oxidase inhibitors is any substance that inhibits the activity of xanthine oxidase.  Xanthine oxidase inhibitors reduces the production of uric acid. Xanthine inhibitors are of two types  Purine analogues & others  Purine analogues include allopurinol & oxipurinol.  Others include febuxostat & inositols. DEPT. PHARMACEUTICAL CHEMISTRY 7
  • 8. Examples : allopurinol Oxipurinol DEPT. PHARMACEUTICAL CHEMISTRY 8
  • 9. Mechanism of action of allopurinol  allopurinol is a purine analog, it is a structural isomer of hypoxanthine & is an a inhibitor of the enzyme xanthine oxidase.  In addition to the blocking uric acid production inhibitor of xanthine oxidase causes an increase in hypoxanthine & xanthine.  While xanthine can not be converted into purine ribotides, hypoxanthine can be salvaged to purine ribotides adinosine & guanosine monophosphate. DEPT. PHARMACEUTICAL CHEMISTRY 9
  • 10.  Increased level of these ribotides may causes feed back inhibition of amido phosphoribosyl transferase – rate limiting enzyme of purine biosynthesis.  Allopurinol therfore decreases uric acid formation may also inhibit the purine synthesis. DEPT. PHARMACEUTICAL CHEMISTRY 10
  • 11. CYTOCHROME P450 INHIBITORS  Cytochrome p450 belongs to the super family of protiens containing a heme cofactor & therefore are hemoprotines.  Many drug interactions are result of inhibition or induction of the CYP450 enzymes.  Enzyme inhibition usually involves competation with another drug for the enzyme binding site. DEPT. PHARMACEUTICAL CHEMISTRY 11
  • 12. Examples : Ciprofloxacine Isoniazid DEPT. PHARMACEUTICAL CHEMISTRY 12
  • 13. Mechanism of action Ciprofloxacin is a broad spectrum antibiotic active against both Gram- positive & Gram-negative bacteria. It functions by inhibiting DNA gyrase, a type 2 topoisomerase, & topoisomerase 4 , enzymes necessary to separate bacterial DNA there by inhibiting cell division. DEPT. PHARMACEUTICAL CHEMISTRY 13
  • 14. DHFR Enzyme DHFR enzyme that reduces dihydrofolic acid to tetradhydrofolic folic acid using NADPH as electron donor, which can be converted to the kinds of tetrahydrofolate cofactors. DEPT. PHARMACEUTICAL CHEMISTRY 14
  • 16. DHFR Inhibitors : DHFR inhibitor is molecule that inhibits the function of dihydrofolate reductase & is the type of antifolate. Examples Trimthoprim Iclaprim DEPT. PHARMACEUTICAL CHEMISTRY 16
  • 17. Mechanism of action :  Trimethoprim binds to dihydrofolate reductase & inhibits the reduction of dihydrofolic acid (DHF) to tetrahydrofolic acid (THF).  THF is an essential precursor in the thymine synthesis pathway & interference with this pathway inhibits the bacterial DNA synthesis. DEPT. PHARMACEUTICAL CHEMISTRY 17
  • 18.  Trimethoprim’s affinity for bacterial dihydrofolate reductase is several thousand times greater than its affinity for human dihydrofolate reductase  Sulfamethoxazole inhibits dihydrofolate synthatase an enzyme involved further upstream in the same pathway  Trimethoprim & sulfamethoxazole is commonly used in combination due to claimed synergistic effect & reduced development of resistance. DEPT. PHARMACEUTICAL CHEMISTRY 18
  • 19. GASTRIC ACID SECRETION  Acid secretion is a physiological process of the stomach this acid production is caused by the highly specialized cell is fundic mucosa, and gastric parietal cells in the stomach.  This gastric acid will directly or indirectly helps the physiological functions like it will initiates the activation of the enzyme pepsinogen which is involved in digestive process, it will also kills bacteria and microbes.
  • 20. PROTON PUMP( H+ / K+ -ATPase ENZYME) 1.Structure : Present in tubulovesicular and canalicular mestric parital cells Consist of two subunits a114-kDa-α-subunit (10 trance membrane helix) and 34-kDa-β-subunit (1 trance membrane helix) α- subunit-catalytic and transport function β-subunit- required for endocytic retrieval of H+ / K+ -ATPase enzyme from the canalicular membrane DEPT. PHARMACEUTICAL CHEMISTRY 20
  • 21. DEPT. PHARMACEUTICAL CHEMISTRY 21 STRUCTURE OF PROTON PUMP
  • 22. DEPT. PHARMACEUTICAL CHEMISTRY 22 PROTON PUMP AND ACID SECRETION.
  • 23. GASRTIC PROTON PUMP INHIBITORS : Proton pump inhibitors (or "PPI"s) are a group of drugs whose main action is pronounced and long-lasting reduction of gastric acid production. They are the most potent inhibitors of acid secretion available today. The group followed and has largely superseded another group of pharmaceuticals with similar effects, but different mode-of-action, called H2-receptor antagonists. DEPT. PHARMACEUTICAL CHEMISTRY 23 This class of compound inhibit gastric proton pump in a non competitive manner by covalent binding of their active intermediate to the enzyme.
  • 24. Omeprazole Pentaprasol DEPT. PHARMACEUTICAL CHEMISTRY 24 O N N S H N OMe OMe O F F H C
  • 25. Mode of action:-  Physico-chemically PPIs (Omeprazole) represent a weak base with a pka value of 4.  It can pass through biological membrane as a result of its lipid permeable properties.  At physiological pH it is unionized & this neutral form passes freely across biological membrane.  However is an acidic environment with a pH below 4,it is protonated. This result in a limited permeability. Due to unique structure of parietal cell with its Secrotory Cannaliculi DEPT. PHARMACEUTICAL CHEMISTRY 25
  • 26.  PPIs (Omeprazole) is trapped with in these Cannaliculi & undergoes chemical transformation into activated Pyridinium Sulfenamide (active enzyme inhibitor).  Which bind covalently to sulphydryl groups of cysteins of the proton pump (H+ /K+ ATPase) followed by structural alteration of the enzyme finally inactivates the catalytic function of the enzyme. DEPT. PHARMACEUTICAL CHEMISTRY 26
  • 27. FAQ’S 1)Eplain the process of gastric cid secretion, write an account of developing drug from lead the inhibition of gastric acid secretion. 2) Discuss mechanism of action of gastric acid secretion & inhibition what are the drugs used for controlling acid secretion explain their mechanism. 3) Write account on DHFR enzyme inhibitor. DEPT. PHARMACEUTICAL CHEMISTRY 27
  • 28. REFERENCES  Medicinal chemistry by Burger, 4th edition Pg.no 103-104  Principles of drug design by Smith Pg.no 17-19 www.google.com DEPT. PHARMACEUTICAL CHEMISTRY 28