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TRINH MAI DUY LUU
Class: Advanced Bioscience and Biotechnology Frontiers
Professor: Dr. Yuji SAITO
1
CONTENTS
The Nobel Prize in Chemistry 1993
Polymerase Chain Reaction (PCR)
Modified PCR techniquesModified PCR techniques
Conclusion
2
I
3
Dr. Kary Banks MullisI.1
Born: December 28, 1944 in Lenoir, North
Carolina
PhD. Biochemistry 1972, University of California
Founder and Chief Scientific Officer,
Altermune, LLC
The Nobel Pize in Chemistry 1993 and many
4
The Nobel Pize in Chemistry 1993 and many
other famous prizes
Scientific advisor for Health Discovery
Corporation-Georgia, Fondazione Villa Maria-Italy,
Palazzo Innovazione Project-Italy, Biological
Targets-Texas
Many Patents
Two book and many scientific papers
Kary B. Mullis
The Nobel Prize in Chemistry 1993I.2
The Nobel Prize in Chemistry 1993 was awarded "for contributions to the
developments of methods within DNA-based chemistry“ jointly with one half
5
developments of methods within DNA-based chemistry“ jointly with one half
to Kary B. Mullis "for his invention of the polymerase chain reaction (PCR)
method" and with one half to Michael Smith "for his fundamental
contributions to the establishment of oligonucleotide-based, site-directed
mutagenesis and its development for protein studies”
http://www.nobelprize.org/nobel_prizes/chemistry/laureates/1993/
II
6
DNA REPLICATION PROCESS
•Mechanisms of DNA replication in prokaryotes
and eukaryotes are essentially similar with some
differences due to differences in cell structure and
function between the two groups.
II.1
• DNA replication process includes initiation, DNA
synthesis and termination steps
7
DNA synthesis step – the replication fork
•Two DNA
polymerases, each
catalayzes the synthesis
of one daughter strand
• DNA primases
synthesize primers
• Single-stranded
II.1
• Single-stranded
Binding Proteins (SSB)
bind to the separated
parental strand
• DNA topoisomerase
unwinds the double
helix ahead the moving
replication fork
8
• The double helix must be separated into two
single strands by DNA helicases
Figure 1. The replication fork
Nucleic acid thermodynamics
• Hybridization,
interation between
complementary
strands of DNA into a
single complex
• Denaturation or
DNA melting, double-
II.2
DNA melting, double-
stranded DNA
unwinds and
separates into single-
stranded strand
• Annealing, binding
of a DNA probe or
primer to a DNA
strand
9
“Copyright 1997 from Encyclopedia of life sciences. Nucleic
acids: Thermal Stability and Denaturation”
Figure 2. “Melting curve” being monitored in a
absorbance experiment as a function of temprature.
Nucleic acids absorb strongly in the UV region and this
absorbance increases upon the disassociation of the
strands. Tm: the melting temprature
Polymerase Chain Reaction
II.3
A Polymerase Chain Reaction includes these following
elements:
•Primers are oligonucleotides (18-24 bps) which can
anneal with the target sequence specifically
•DNA template contains the target sequence
10
•DNA template contains the target sequence
•Enzyme DNA polymerase which now is purified from
the thermophilic bacterium Thermus aquaticus is named
Taq polymerase
•[Mg2+] is cation working as cofactor of Taq polymerase
•dNTPs include ATPs, GTPs, CTPs, and TTPs
Polymerase Chain Reaction
II.3
95oC
55oC
72oC
Figure 3. The basic PCR.
Duplex DNA is heat denatured
to give single strands, and two
oligonucleotide primers are
annealed to their
complementary sequences on
the target DNA. Taq
polymerase (thermosable) is
used to synthesis
11
“Copyright 2008 from An introduction to genetic engineering. Published by Cambridge”
used to synthesis
complementary strands from
the template strands by primer
extension. The cycle is then
repeated by denaturation of the
DNA, and the programmes is
repeated many times.
III
12
Application of PCR
III.1
13
“Copyright 2008 from An introduction to genetic engineering. Published by Cambridge”
Figure 4. Nuber of publications citing the polymerase
chain reaction from 1985 to 1999. This shows the rapid
spread of the use of PCR in research.
PCR TECHNIQUESIII.2
14
IV
15
Conclusion
The invention of Kary B. Mullis is extremely essential for
the development of science
There are many diverse applications of the PCR technique
IV.1
16
17
CRISPR/CAS9
18
CRISPR/CAS9 system
Cas 9 is nuclease which is able to cleavage
dsDNA with two nuclease domains: RuvC-
like domian and HNH motif
sgRNA, chimeric sigle-guide RNA, includes
crRNA and tracrRNA
crRNA is able to bind directly to a 20-nucleotide
sequence, so called protospacer
tracrRNA, trans-activating CRISPR RNA), is able to
interact with crRNA and CAS9 protein
PAM (protospacer-adjacent motif) includes
3-nucleotide element with the sequence NGG
19
CRISPR/CAS9
Step 1
20
Cas9
nuclease
sgRNA
(single guide
RNA)
Cas9
complex
CRISPR/CAS9
Step 2
21
CRISPR/CAS9
Step 3
22
23

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PCR presentation autumne 2015

  • 1. LOGO TRINH MAI DUY LUU Class: Advanced Bioscience and Biotechnology Frontiers Professor: Dr. Yuji SAITO 1
  • 2. CONTENTS The Nobel Prize in Chemistry 1993 Polymerase Chain Reaction (PCR) Modified PCR techniquesModified PCR techniques Conclusion 2
  • 3. I 3
  • 4. Dr. Kary Banks MullisI.1 Born: December 28, 1944 in Lenoir, North Carolina PhD. Biochemistry 1972, University of California Founder and Chief Scientific Officer, Altermune, LLC The Nobel Pize in Chemistry 1993 and many 4 The Nobel Pize in Chemistry 1993 and many other famous prizes Scientific advisor for Health Discovery Corporation-Georgia, Fondazione Villa Maria-Italy, Palazzo Innovazione Project-Italy, Biological Targets-Texas Many Patents Two book and many scientific papers Kary B. Mullis
  • 5. The Nobel Prize in Chemistry 1993I.2 The Nobel Prize in Chemistry 1993 was awarded "for contributions to the developments of methods within DNA-based chemistry“ jointly with one half 5 developments of methods within DNA-based chemistry“ jointly with one half to Kary B. Mullis "for his invention of the polymerase chain reaction (PCR) method" and with one half to Michael Smith "for his fundamental contributions to the establishment of oligonucleotide-based, site-directed mutagenesis and its development for protein studies” http://www.nobelprize.org/nobel_prizes/chemistry/laureates/1993/
  • 7. DNA REPLICATION PROCESS •Mechanisms of DNA replication in prokaryotes and eukaryotes are essentially similar with some differences due to differences in cell structure and function between the two groups. II.1 • DNA replication process includes initiation, DNA synthesis and termination steps 7
  • 8. DNA synthesis step – the replication fork •Two DNA polymerases, each catalayzes the synthesis of one daughter strand • DNA primases synthesize primers • Single-stranded II.1 • Single-stranded Binding Proteins (SSB) bind to the separated parental strand • DNA topoisomerase unwinds the double helix ahead the moving replication fork 8 • The double helix must be separated into two single strands by DNA helicases Figure 1. The replication fork
  • 9. Nucleic acid thermodynamics • Hybridization, interation between complementary strands of DNA into a single complex • Denaturation or DNA melting, double- II.2 DNA melting, double- stranded DNA unwinds and separates into single- stranded strand • Annealing, binding of a DNA probe or primer to a DNA strand 9 “Copyright 1997 from Encyclopedia of life sciences. Nucleic acids: Thermal Stability and Denaturation” Figure 2. “Melting curve” being monitored in a absorbance experiment as a function of temprature. Nucleic acids absorb strongly in the UV region and this absorbance increases upon the disassociation of the strands. Tm: the melting temprature
  • 10. Polymerase Chain Reaction II.3 A Polymerase Chain Reaction includes these following elements: •Primers are oligonucleotides (18-24 bps) which can anneal with the target sequence specifically •DNA template contains the target sequence 10 •DNA template contains the target sequence •Enzyme DNA polymerase which now is purified from the thermophilic bacterium Thermus aquaticus is named Taq polymerase •[Mg2+] is cation working as cofactor of Taq polymerase •dNTPs include ATPs, GTPs, CTPs, and TTPs
  • 11. Polymerase Chain Reaction II.3 95oC 55oC 72oC Figure 3. The basic PCR. Duplex DNA is heat denatured to give single strands, and two oligonucleotide primers are annealed to their complementary sequences on the target DNA. Taq polymerase (thermosable) is used to synthesis 11 “Copyright 2008 from An introduction to genetic engineering. Published by Cambridge” used to synthesis complementary strands from the template strands by primer extension. The cycle is then repeated by denaturation of the DNA, and the programmes is repeated many times.
  • 13. Application of PCR III.1 13 “Copyright 2008 from An introduction to genetic engineering. Published by Cambridge” Figure 4. Nuber of publications citing the polymerase chain reaction from 1985 to 1999. This shows the rapid spread of the use of PCR in research.
  • 15. IV 15
  • 16. Conclusion The invention of Kary B. Mullis is extremely essential for the development of science There are many diverse applications of the PCR technique IV.1 16
  • 17. 17
  • 19. CRISPR/CAS9 system Cas 9 is nuclease which is able to cleavage dsDNA with two nuclease domains: RuvC- like domian and HNH motif sgRNA, chimeric sigle-guide RNA, includes crRNA and tracrRNA crRNA is able to bind directly to a 20-nucleotide sequence, so called protospacer tracrRNA, trans-activating CRISPR RNA), is able to interact with crRNA and CAS9 protein PAM (protospacer-adjacent motif) includes 3-nucleotide element with the sequence NGG 19
  • 23. 23