This document provides an overview of molecular biology, including its key components and techniques. It discusses how molecular biology studies biology at the molecular level, focusing on DNA, RNA, and proteins. Some of the key areas and techniques it covers include recombinant DNA technology, genetic engineering, polymerase chain reaction, restriction enzymes, and gel electrophoresis. The document also recognizes several pioneering scientists in the field, such as Watson, Crick, and Morgan, and discusses how molecular biology research has provided major benefits to society.
DNA Sequencing : Maxam Gilbert and Sanger SequencingVeerendra Nagoria
DNA sequencing is a technique to find out the exact arrangement of Nucleotides to make one strand of DNA. DNA sequencing helps in numerous ways from sequence information to paternity testing, mutation detection etc. Traditionally two approaches were used to solve the problem. First is based of enzymes and Second is based on ddNTPs to sequence the DNA using gel electrophoresis technique.
The S1 nuclease was extracted from Aspergill suoryzae. The S1 nuclease is a specific
single-stranded endonuclease. It can degrade single-stranded DNA and
single-stranded RNA to produce 5'-single-stranded nucleotides or oligonucleotides.
DNA Sequencing : Maxam Gilbert and Sanger SequencingVeerendra Nagoria
DNA sequencing is a technique to find out the exact arrangement of Nucleotides to make one strand of DNA. DNA sequencing helps in numerous ways from sequence information to paternity testing, mutation detection etc. Traditionally two approaches were used to solve the problem. First is based of enzymes and Second is based on ddNTPs to sequence the DNA using gel electrophoresis technique.
The S1 nuclease was extracted from Aspergill suoryzae. The S1 nuclease is a specific
single-stranded endonuclease. It can degrade single-stranded DNA and
single-stranded RNA to produce 5'-single-stranded nucleotides or oligonucleotides.
The next generation sequencing platform of roche 454creativebiogene1
454 is totally different from Solexa and Hiseq of Illumina. The disadvantage of 454 is that it is unable to accurately measure the homopolymer length. For this unavoidable reason, 454 technology will introduce insertion and deletion sequencing errors to the results.
This Presentation will be helpful to undergraduate and postgraduate students of biology and biotechnology in understanding the significance of COT curves in determination of gene and genome complexity amoug various organisms
Gene silencing refers to epigenetic regulation of gene expression.
General Techniques are:
Transcriptional gene silencing
Genomic Imprinting
Paramutation
Transposon silencing
Transcriptional gene silencing
Position effect
RNA-directed DNA methylation
Used in research
Antisense oligonucleotides
Ribozymes
RNA interference
The next generation sequencing platform of roche 454creativebiogene1
454 is totally different from Solexa and Hiseq of Illumina. The disadvantage of 454 is that it is unable to accurately measure the homopolymer length. For this unavoidable reason, 454 technology will introduce insertion and deletion sequencing errors to the results.
This Presentation will be helpful to undergraduate and postgraduate students of biology and biotechnology in understanding the significance of COT curves in determination of gene and genome complexity amoug various organisms
Gene silencing refers to epigenetic regulation of gene expression.
General Techniques are:
Transcriptional gene silencing
Genomic Imprinting
Paramutation
Transposon silencing
Transcriptional gene silencing
Position effect
RNA-directed DNA methylation
Used in research
Antisense oligonucleotides
Ribozymes
RNA interference
The study of nucleic acids began with the discovery of DNA, progressed to the study of genes and small fragments, and has now exploded to the field of genomics. Genomics is the study of entire genomes, including the complete set of genes, their nucleotide sequence and organization, and their interactions within a species and with other species. The advances in genomics have been made possible by DNA sequencing technology. [Source: https://opentextbc.ca/biology/chapter/10-3-genomics-and-proteomics/]
Cell biology is the study of cell structure and function, and it revolves around the concept that the cell is the fundamental unit of life. Focusing on the cell permits a detailed understanding of the tissues and organisms that cells compose.
Describe the application of DNA profiling in paternity tests and forensic investigations
Analyze DNA profiles to draw conclusions about paternity tests and forensic investigations.
Introduction and applications of Atomic force microscopy Dr. GURPREET SINGH
This presentation introduces the students to the intricacies of atomic force microscopy, its history, the instrumentation, mode of working, and its applications in various fields of sciences
Types of reactions in biological system and enzyme classification (updated 2018)Dr. GURPREET SINGH
This lecture is aimed at introducing the relevance of enzyme to the various categories of science students (schools, undergraduates etc.). In the light of new developments of Nomenclature and classification by International union of Biochemistry and Molecular Biology), this lecture will be highly useful for the students.
for detail lecture kindly visit the youtube link
https://youtu.be/4wxk637S-Tg
do Like Share and comment for further improvement
This presentation will provide a description about the biosynthesis of plant growth regulator- Cytokinins and gibberalins and their role in plant growth and development
Carbohydrates: Monosaccharides- structure and functionDr. GURPREET SINGH
this presentation describes about the structure of carbohydrates in detail with specific reference to monosaccharides, their classification, structural component and functions
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
insect taxonomy importance systematics and classification
Molecular biology lecture
1. Molecular Biology:
An Era of
Molecules
Dr. Gurpreet Singh, Ph.D (Biotech.)
Assistant Professor,
Department of Biotechnology
Lyallpur Khalsa College, Jalandhar
2. • Brief you about
• Molecular Biology
–Its definition and components
– Recombinant DNA technology
– Genetic engineering
3.
4.
5. Molecular Biology
• …. is the study of the biology at the
molecular level i.e. DNA, RNA and protein.
• The field overlaps with other areas of
biology, particularly genetics and
biochemistry
• Molecular biology concerns with
understanding the interactions between
the various systems of a cell.
6.
7. • Biochemistry
……is the study of molecules at the
function level (e.g. Proteins).
• Genetics
……is the study of the effect of genetic
differences on organisms.
10. All Life depends on 3 critical molecules
DNAs
Hold information on how cell works
RNAs
Act to transfer short pieces of information to
different parts of cell
Provide templates to synthesize into protein
Proteins
Form body’s major components (e.g. hair,
skin, etc.)
12. Gene:
• Mendelian definition: a discrete units of hereditary
information located on the chromosomes and
consisting of DNA .
• Molecular Biology: The part of the DNA that encodes
for a functional proteins are called genes. The DNA
consists of 4-nucleotides (A,T,G,C).
Genome:
Sum total of all the genetic material or
genes(DNA) present in the body.
Genomics:
It deals with the systematic use of genome
information to provide answers in biology, medicine, and
industry.
13. Protein
Sequence of amino acids encoded by a gene.
Proteome
The sum total of all the proteins in any organism
Proteomics
A newly emerging field of life science research that
uses High Throughput (HT)technologies to display,
identify and/or characterize all the proteins in a given cell,
tissue or organism (i.e. the proteome).
14. Proteins: Workhorses of the Cell
• 20 different amino acids
– different chemical properties
– cause the protein chains to fold up into specific three-
dimensional structures that define their particular
functions in the cell.
• Proteins do all essential work for the cell
– build cellular structures
– digest nutrients i.e. acts as enzymes
– execute metabolic functions
– Mediate information flow within a cell and among
cellular communities.
15. How Can We Analyze DNA?
……ATGAGCGCCGGAAGCGCGAGTTTCCTCGAGATCCAGCCCTCGGAGCTGGCATTTCCCTTTGAAT
TGATGAAGCAGAGCTCGTGCTCCATGCAACTCGCAAATAAGACCGACCATTATGTAGCATTCAAGG
TCAAAACTACCAACCCAAAGCAGTACTGTGTGCGCCCTAATATTGGCGTTGTACTTCCTGGGTCGA
CTTGTGATGTTACAGTTACAATGCAAGCGCAGAGGGAAGCACCTCCTGATCTGCAGTGTAAGGACA
AGTTCCTAGTTCAAAGTGTTGCAGCTGAGAATGGTGCAGCAACTCAAGATATTAGTGCAGCAATGT
TCAACAAGGAGCCAGGGAAGGTTGTTGATGAATGCAAGCTGCGTGTAATTTATGTGCCAACATCTT
CACCTAGCCTGTTCTCTGAAGATTCAGAACAAGGGAGTTCTGCTCGTTCATTGGAAAACGGGACTC
CTAATTCTACATTGCCACAATCTGTATTTAGATCATCTGGTGAAGCATCAAAGGAGAAGTCCTCGG
AGGCAACATCCATGATTTCCAAGCTAACTGAGGAGAAAATGTCTGCTGTTCAGCAAAACCAGAAGT
TGAGACAAGAGCTGGATGTCCTACGCAAAGAGAGCAGCAAAAGCAACGGCGGTTTCTCAATCACCT
TCTTGATTGTGGTGGGTATTCTGGGCATCATCGCTGGTTTCATCCTCAAGAAGACATAGGAG…………
……….
……MSAGSASFLEIQPSELAFPFELMKQSSCSMQLANKTDHYVAFKVKTTNPKQYCVRPNIGVVLPG
STCDVTVTMQAQREAPTLSAVYGQVPYFQSVAAQNGAATQDISAAMFNKEPGKVVDECKLRVIYVP
TSSPSLFSEDSEQGSSARSLENGTPNSTLPQSVFRSSGEASKEKSSEATSIISKLTEEKMSAVQQN
QKFRQELDVLRKESSKSNGGFSITFL………………….
Protein sequence
DNA sequence
16. Analyzing a Genome
• We analyze a genome in four easy steps.
– Cut it
• Use enzymes to cut the DNA in to small fragments.
– Copy it
• Copy it many times to make it easier to see and detect.
– Read it
• Use special chemical techniques to read the small fragments.
– Assemble it
• Take all the fragments and put them back together. This is hard!!!
• Bioinformatics takes over
– Where we learn from the sequenced DNA about its properties using
computers.
17. Tools in Molecular Biology
• Cutting and joining DNA
– Restriction Enzymes (cutting) and DNA ligase (joining)
• Copying DNA
– Polymerase Chain Reaction (making a million copies in 3 hours)
– Cloning ( copying one gene from an organism to another)
• Measuring DNA Length
– Electrophoresis (separating components exploiting different
properties of the molecule like DNA, RNA and Proteins)
– DNA and protein sequencing
20. Polymerase Chain Reaction (PCR)
…is a rapid, inexpensive and
simple way of copying specific
DNA fragments from minute
quantities of source DNA
material.
It does not necessarily require
the use of radioisotopes or toxic
chemicals.
It involves preparing the sample
DNA and a master mix with
primers, followed by detecting
reaction products.
21. 1. Denaturation: DNA fragments are heated at high
temperatures, which reduce the DNA double helix to
single strands. These strands become accessible to
primers.
2. Annealing: Primers anneal to the complementary
regions in the DNA template strands, and double
strands are formed again between primers and
complementary sequences.
3. Extension: The DNA polymerase synthesize a
complementary strand. The enzyme reads the
opposing strand sequence and extends the primers
by adding nucleotides in the order in which they can
pair. The whole process is repeated over and over.
How PCR works i.e. steps involved
22. Recombinant DNA technology/molecule
Recombinant DNA technology
the collection of methods used to
accomplish genetic engineering
Genetic engineering
the deliberate modification of an
organism's genetic information by directly
changing its nucleic acid
23. Recombinant DNA
is a molecule that combines DNA from two
sources
Also known as gene cloning
Creates a new combination of genetic material e.g.
Human gene for insulin was placed in bacteria
and the bacteria are recombinant organisms and
produce insulin in large quantities for diabetics
Vector:
molecule carrier of DNA fragment into cell
Transformation:
uptake of foreign DNA into cells
Some important terms used in
Recombinant DNA Technology
26. Gel electrophoresis of DNA, RNA
and Proteins
Electrophoresis is derived from two words
Electro- which means electric field
Phoresis- separation
i.e. Separation of DNA, RNA or the
protein molecule under the influence of
electric field.
Gel
….is a solid support in which the
samples moves and gets separated. It may
be agaroase (DNA or RNA) or
polyacrylamide for protein
27. Some of the Scientist, contribution of whom are
pioneered in the development of the field of Molecular
Biology
Gregor Mendel 1865:
The Father of Genetics
Emil Fischer 1902:
showed amino acids
are linked and form
proteins
Thomas Morgan:
genes on
chromosomes are the
discrete units of
heredity
28. James Watson and Francis
Crick 1953; double helix
structure of DNA
Leroy Hood: Developed
automated sequencing mechanism
• 1995 John Craig Venter: First bacterial
genomes sequenced