Flareups during root canal treatment can be caused by mechanical, chemical or microbial factors. They typically present as pain and swelling within hours or days after a procedure. Preventing flareups involves minimizing debris extrusion, completing treatment in one visit, using intracanal medications, maintaining asepsis and not leaving teeth open between appointments. Management includes incision and drainage if abscess is present, along with analgesics, antibiotics and potential occlusal reduction.