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CRISPR/cas9
By: Reza
Mozafari
Clustered
Regulatory-
Interspaced
Short
Palindromic
Repeats
G
C
A
C
C
G
A
G
T
C
G
G
T
G
C
C
G
T
G
G
C
T
C
A
G
C
C
A
C
G
Clustered
Regulatory-
Interspaced
CRISPRCAS GENES
Cas protein
Exogenous DNA is processed by Cas proteins into short (20-30 base
pairs) sequences that are adjacent to the Protospacer Adjacent Motif
(PAM) site.
These short pieces of DNA are then incorporated into the host
genome between CRISPR repeats, and serve as a 'memory' of past
exposures.
Guide RNA
Cas9 Endonuclease
crisprRNA and tracRNA
HERE, THE RNA IS A GUIDE TO FIND
MORE MATCHING DNA CHUNKS
CAS9 IS ANOTHER ONE OF THOSE
NUCLEASE PROTEINS, AND
IT CUTS WHEREVER THE GUIDE RNA
TELLS IT TO
Why is CRISPR/Cas9 genome
editing technology
revolutionizing biology?
MANY APPLICATIONS IN ANIMALS
AND PLANTS
ACCURATE DNA TARGETING
MECHANISM
SOFTWARE VS HARDWARE
MAKING A SPECIFIC
SEQUENCE OF RNA IS MUCH
EASIER THAN MAKING A
SPECIFIC 3D PROTEIN
Targeting the germline for genome editing
Embryos - Gametes - Stem cells
Gene editing in preimplantation embryos
The editing system is directly microinjected into the cytoplasm or
pronuclei of zygotes.
Affected sperm
Affected oocyte
IVF/ICSI
CRISPR/Cas9
editing in embryo
Corrected embryo
Corrected embryoCRISPR/Cas9
editing in embryo
IVF/ICSI
Let’s take an example..
Xiangjin Kang in 2015, introduced the naturally occurring
CCR5Δ32 allele into early human tripronuclear (3PN)
embryos by CRISPR/Cas9 mediated genome editing.
Gene editing of male germ cells
Testis biopsy Spermatogonia SC
derivation
CRISPR/Cas9 editing
in spermatogonia SC
Gamete differentiation
Corrected sperm ICSI
Gene modification could be applied during
gametogenesis.
The CRISPR/Cas9 system could be used on
sperm to generate gene corrected mature
sperm.
Gene editing of female germ cells
GV oocyte CRISPR/Cas9 editing
in oocytes
In vitro maturation
Corrected
oocyte
ICSI
The CRISPR/Cas9 system could be used on
growing immature oocytes to generate gene
corrected mature oocytes.
Pluripotent cells editing and differentiation
Induced Pluripotent Stem cells—iPSC
Can be grown easily in bulk amounts
Sustain single cell passaging
Skin biopsy
Reprogramming
iPS derivation
CRISPR/Cas9 editing
In iPS
Gamete differentiation
ICSI
The main concerns are …
Mosaicism embryos
Inefficient nuclease cutting
Inaccurate DNA repair
off-targets mutations
Heritable off-target mutations
Possible uses of genome editing in repr
• Germ line modifications for genetic disease correction
• Correction of non-medical conditions
Germ line modifications for genetic disease
correction
Autosomal recessive diseases
Two carrier/one affected parents PGD
Both parents are affected CRISPR/Cas9 for one of
the parents
healthy carriers
Autosomal dominant disease
Allows the patients to produce sperm or
oocytes that are free from the mutation.
Germ line modifications for genetic disease
correction
Chromosomal aberrations
The Robertsonian translocation 21;21
Achieving more desirable traits
Correction of non-medical conditions
Polygenicity
Epigenetics
Thank you.
References:
Doudna, Jennifer A., and Emmanuelle Charpentier. "The new frontier of
genome engineering with CRISPR-Cas9." Science 346.6213 (2014): 1258096.
Harrison, Melissa M., et al. "A CRISPR view of development." Genes &
development 28.17 (2014): 1859-1872.
Kang, Xiangjin, et al. "Introducing precise genetic modifications into human
3PN embryos by CRISPR/Cas-mediated genome editing." Journal of assisted
reproduction and genetics 33.5 (2016): 581-588.
Smertenko, Andrei, and Peter V. Bozhkov. "Somatic embryogenesis: life and
death processes during apical–basal patterning." Journal of experimental
botany (2014): eru005.
Vassena, R., et al. "Genome engineering through CRISPR/Cas9 technology in
the human germline and pluripotent stem cells." Human reproduction update
(2016): dmw005.

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CRISPR/cas9

  • 2.
  • 5. Exogenous DNA is processed by Cas proteins into short (20-30 base pairs) sequences that are adjacent to the Protospacer Adjacent Motif (PAM) site. These short pieces of DNA are then incorporated into the host genome between CRISPR repeats, and serve as a 'memory' of past exposures.
  • 6.
  • 7.
  • 9. HERE, THE RNA IS A GUIDE TO FIND MORE MATCHING DNA CHUNKS CAS9 IS ANOTHER ONE OF THOSE NUCLEASE PROTEINS, AND IT CUTS WHEREVER THE GUIDE RNA TELLS IT TO
  • 10. Why is CRISPR/Cas9 genome editing technology revolutionizing biology?
  • 11. MANY APPLICATIONS IN ANIMALS AND PLANTS ACCURATE DNA TARGETING MECHANISM SOFTWARE VS HARDWARE MAKING A SPECIFIC SEQUENCE OF RNA IS MUCH EASIER THAN MAKING A SPECIFIC 3D PROTEIN
  • 12. Targeting the germline for genome editing Embryos - Gametes - Stem cells
  • 13. Gene editing in preimplantation embryos The editing system is directly microinjected into the cytoplasm or pronuclei of zygotes. Affected sperm Affected oocyte IVF/ICSI CRISPR/Cas9 editing in embryo Corrected embryo Corrected embryoCRISPR/Cas9 editing in embryo IVF/ICSI
  • 14. Let’s take an example.. Xiangjin Kang in 2015, introduced the naturally occurring CCR5Δ32 allele into early human tripronuclear (3PN) embryos by CRISPR/Cas9 mediated genome editing.
  • 15. Gene editing of male germ cells Testis biopsy Spermatogonia SC derivation CRISPR/Cas9 editing in spermatogonia SC Gamete differentiation Corrected sperm ICSI Gene modification could be applied during gametogenesis. The CRISPR/Cas9 system could be used on sperm to generate gene corrected mature sperm.
  • 16. Gene editing of female germ cells GV oocyte CRISPR/Cas9 editing in oocytes In vitro maturation Corrected oocyte ICSI The CRISPR/Cas9 system could be used on growing immature oocytes to generate gene corrected mature oocytes.
  • 17. Pluripotent cells editing and differentiation Induced Pluripotent Stem cells—iPSC Can be grown easily in bulk amounts Sustain single cell passaging Skin biopsy Reprogramming iPS derivation CRISPR/Cas9 editing In iPS Gamete differentiation ICSI
  • 18. The main concerns are … Mosaicism embryos Inefficient nuclease cutting Inaccurate DNA repair off-targets mutations Heritable off-target mutations
  • 19. Possible uses of genome editing in repr • Germ line modifications for genetic disease correction • Correction of non-medical conditions
  • 20. Germ line modifications for genetic disease correction Autosomal recessive diseases Two carrier/one affected parents PGD Both parents are affected CRISPR/Cas9 for one of the parents healthy carriers
  • 21. Autosomal dominant disease Allows the patients to produce sperm or oocytes that are free from the mutation. Germ line modifications for genetic disease correction Chromosomal aberrations The Robertsonian translocation 21;21
  • 22. Achieving more desirable traits Correction of non-medical conditions Polygenicity Epigenetics
  • 23.
  • 25. References: Doudna, Jennifer A., and Emmanuelle Charpentier. "The new frontier of genome engineering with CRISPR-Cas9." Science 346.6213 (2014): 1258096. Harrison, Melissa M., et al. "A CRISPR view of development." Genes & development 28.17 (2014): 1859-1872. Kang, Xiangjin, et al. "Introducing precise genetic modifications into human 3PN embryos by CRISPR/Cas-mediated genome editing." Journal of assisted reproduction and genetics 33.5 (2016): 581-588. Smertenko, Andrei, and Peter V. Bozhkov. "Somatic embryogenesis: life and death processes during apical–basal patterning." Journal of experimental botany (2014): eru005. Vassena, R., et al. "Genome engineering through CRISPR/Cas9 technology in the human germline and pluripotent stem cells." Human reproduction update (2016): dmw005.

Editor's Notes

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  3. … AND JUST SIT THERE.
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  5. - Ethical issues - Some limitations before CRISPR/Cas9 technology could be translated to the clinic, some problems will need to be resolved; the main issue is mosaicism, together with off-target effects and unwanted random genome integration of oligonucleotides and constructs.