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3-1
Chapter 3
The Organic
Molecules of Life
Copyright © McGraw-Hill Education. All rights reserved. Authorized only for instructor use in the classroom. No reproduction or distribution without the prior written consent of McGraw-Hill Education.
• In this section, the following objective will be
covered:
• List the characteristics of a carbon atom that allow it
to form a variety of molecules.
3.1 ORGANIC MOLECULES
Organic Chemistry
• Biological molecules
• Organic molecules contain carbon and hydrogen
• Inorganic molecules do not contain a combination of
carbon and hydrogen (H2O and NaCl)
THE
CARBON
ATOM
• Total of six electrons—4 in outer shell
• Almost always shares electrons with
nonmetal elements such as hydrogen,
nitrogen, and oxygen
• Can bond with as many as 4 other
elements
• Most often shares electrons with other
carbon atoms
• Hydrocarbons—chains of carbon atoms
bonded only to hydrogen atoms
• Isomers—same number and kinds of
atoms in a variety of arrangements
• May have different properties due to
different shape
HYDROCARBONS ARE HIGHLY VERSATILE
Carbon chains can vary in
length, and/or have double
bonds, and/or be branched.
Carbon chains can from rings of
different sizes and have double
bonds.
CARBON MOLECULES
• Size and shape of carbon skeleton or backbone can vary
drastically
• Functional group—specific combination of bonded atoms
that always has the same chemical properties and always
reacts the same way
• Reactivity of organic molecule largely dependent on
attached functional groups
• Often use R to stand for the rest of the molecule
COMMON FUNCTIONAL GROUPS
Group
Structure Found In
Hydroxyl Alcohols, sugars
Carboxyl
Amino acids, fatty acids
Amino Amino acids, proteins
Sulfhydryl Amino acid cysteine, proteins
Phosphate
R = remainder of molecule
ATP, nucleic acids
ORGANIC MOLECULES SERVE AS
STRUCTURAL MATERIALS IN
LIVING ORGANISMS
a: © SuperStock/Alamy; b: © Science Photo Library/Alamy Stock Photo RF; c: © Zeljko Radojko/Getty Images; d: Design Pics/Bilderbuch RF Will & Deni Mclntyre/Science Source
• In this section, the following objectives will be
covered:
• Summarize the structure and function of each category of
carbohydrates.
• Summarize the structure and function of each category of
lipids.
• Summarize the structure and function of proteins.
• Summarize the two categories of nucleic acids and
describe their biological functions.
3.2 THE BIOLOGICAL MOLECULES OF
CELLS
MACROMOLECULES
AKA BIOMOLECULES
•4 categories:
• Carbohydrates
• Lipids
• Proteins
• Nucleic Acids
BIOMOLECULE BASICS
• Monomers—subunits or building blocks of the large molecule
• Polymer—monomers joined together to form a large molecule
• Dehydration synthesis reactions join monomers to form polymers
• Equivalent of removing a water molecule
• Hydrolysis reactions break polymers apart into monomers
• Equivalent of adding a water molecule
SYNTHESIS OF POLYMERS
BREAKDOWN OF POLYMERS
CARBOHYDRATES
• Almost universally used as
immediate energy source in living
things
• Play structural roles
• Polymers of monomers called
saccharides or sugars
• Monosaccharide, disaccharide,
polysaccharide
CARBOHYDRATES
• Monosaccharides
• Single sugar molecule
• Simple sugars
• 3–7 carbon backbone
• Glucose C6H12O6
• 2 isomers—fructose and galactose
• Cells use glucose as the energy source of choice.
• Ribose and deoxyribose are found in RNA and
DNA.
GLUCOSE
𝐂 𝟔 𝐇 𝟏𝟐 𝐎 𝟔
DISACCHARIDES
• Disaccharides
• 2 monosaccharides bonded together
• Maltose—yeast breaks down maltose in beer for
energy and produces ethyl alcohol
• Fermentation
• Sucrose—table sugar
BREAKDOWN
OF MALTOSE, A
DISACCHARIDE
POLYSACCHARIDES
• Polysaccharides are energy storage
molecules
• Polymers of monosaccharides
• Some function as energy storage molecules.
• Plants store glucose as starch.
• Animals store glucose as glycogen.
• Some function as structural components.
• Cellulose—plant cell walls
• Most abundant of all organic molecules
• Digested only by some microbes
• Chitin—crab, lobster, insect exoskeletons
STARCH FUNCTION
CELLULOSE STRUCTURE AND FUNCTION
GLYCOGEN STRUCTURE
CARBOHYDRATE
FOODS
LIPIDS
• All are insoluble in water
• Long nonpolar
hydrocarbon chains
• Relative lack of
hydrophilic functional
groups
• Very diverse structures
and functions
• Fats and oils used for
long-term energy storage
• Oil may help waterproof
skin, hair, and feathers.
TRIGLYCERIDES
• Fats and oils
• Triglycerides are composed of 1 glycerol
and 3 fatty acids.
SYNTHESIS
AND
BREAKDOWN
OF FAT
SATURATED OR
UNSATURATED FATS
• Fatty acids are either:
• Saturated—no double bonds
between carbon atoms
• Butter is solid at room
temperature.
• Unsaturated—one or more
double bonds between
carbon atoms
• Oil is liquid at room
temperature.
• Trans fatty acids have
been artificially
hydrogenated to make
them more solid.
UNSATURATED FATTY ACID CHAIN
SATURATED FATTY ACID CHAIN
TRANS FATTY ACID CHAIN
LIPIDS IN
CELLS
• Phospholipids
• Form the bulk of the
plasma membrane
• One end of the
molecule is water-
soluble.
• Polar phosphate
head
• Other end of the
molecule is not water-
soluble.
• Nonpolar fatty acid
tails
PHOSPHOLIPIDS
FORM
MEMBRANES
PLASMA MEMBRANE OF A CELL
STEROIDS
• Lipids made of 4 fused
rings
• Not fatty acids but are
insoluble in water
• Derived from
cholesterol
• Differ only in functional
groups
STEROID DIVERSITY
LIPID
FOODS
PROTEINS
• Proteins are composed of amino acid
monomers
• Central carbon bonded to hydrogen atom, amino group,
carboxyl group, and a side chain, or R group
• 20 different amino acids
• Differ according to R group
• Many functions: support, metabolism, transport, defense,
regulation, and motion
This Photo by Unknown Author is licensed under CC BY
AMINO
ACIDS
AMINO ACIDS AND
PEPTIDES
• Peptide—two or more amino acids
covalently linked
• Peptide bond—formed by dehydration
reaction between two amino acid
monomers
• Polypeptide—chain of many amino acids
joined by peptide bonds
• Amino acid sequence determines the
final three-dimensional shape of protein
This Photo by Unknown Author is licensed under CC BY
SYNTHESIS AND
DEGRADATION
OF PEPTIDE
SHAPE OF
PROTEINS
• Function is determined by three-
dimensional shape
• Denature: Loss of structure and
function; usually due to pH or
temperature change
• Primary structure—amino acid
sequence
• Secondary structure—portions of
chain form helices or pleated sheets
• Tertiary structure—overall three-
dimensional shape of interacting
secondary structures
• Quaternary structure—more than one
polypeptide chain interacting
LEVELS OF
PROTEIN
ORGANIZATION –
PRIMARY
PRIMARY STRUCTURE:
SEQUENCE OF AMINO
ACIDS
LEVELS OF
PROTEIN
ORGANIZATION –
SECONDARY
SECONDARY
STRUCTURE: ALPHA
HELIX AND PLEATED
SHEET
LEVELS OF
PROTEIN
ORGANIZATION –
TERTIARY
TERTIARY STRUCTURE:
GLOBULAR SHAPE
LEVELS OF
PROTEIN
ORGANIZATION –
QUATERNARY
QUATERNARY
STRUCTURE: MORE
THAN ONE
POLYPEPTIDE
PROTEIN
FOODS
NUCLEIC ACIDS
• Deoxyribonucleic acid (DNA)
• Stores genetic information
• Ribonucleic acid (RNA)
• Helps to make proteins
• Polymers of nucleotide monomers
• Nucleotide composed of a phosphate, 5-carbon
sugar, and nitrogen-containing base
• 5 types of bases—adenine (A), guanine (G),
cytosine (C), and thymine (T) [DNA only], Uracil
(U) [RNA only]
This Photo by Unknown Author is licensed under CC BY-ND
NUCLEOTIDE STRUCTURE
NUCLEOTIDE: PHOSPHATE, SUGAR AND NITROGEN-CONTAINING BASE
STRUCTURE OF DNA
• DNA- Genetic information stored in
sequence of bases
• Deoxyribose as sugar
• Double helix
• Complementary base pairing
• Adenine (A) with thymine (T)
• Cytosine (C) with guanine (G)
DNA STRUCTURE
DNA STRUCTURE WITH BASE PAIRS: G WITH C AND A WITH T
RNA BASES
• RNA
• Ribose as sugar
• Single-stranded
• Uses uracil (U) instead of thymine (T)
This Photo by Unknown Author is licensed under CC BY-ND
RNA STRUCTURE
RNA STRUCTURE WITH BASES G, U, A, C
CONNECTING
PROTEINS
AND NUCLEIC
ACIDS
• Sequence of bases in DNA determines
sequence of amino acids in a protein.
• Sequence of amino acids determines a
protein's structure and function.
• Small changes in the DNA may cause large
changes in a protein.
• Sickle-cell disease
• Individual’s red blood cells are sickle-
shaped
• One amino acid difference
• Inherited disease
SICKLE-CELL DISEASE
CHAPTER 3 OBJECTIVE SUMMARY
• You Should now be able to:
• 1. List the characteristics of a carbon atom that allow it to form
a variety of molecules.
• 2. Summarize the structure and function of each category of
carbohydrates.
• 3. Summarize the structure and function of each category of
lipids.
• 4. Summarize the structure and function of proteins.
• 5. Summarize the two categories of nucleic acids and describe
their biological functions.

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Chapter 3 The Organic Molecules of Life

  • 1. 3-1 Chapter 3 The Organic Molecules of Life Copyright © McGraw-Hill Education. All rights reserved. Authorized only for instructor use in the classroom. No reproduction or distribution without the prior written consent of McGraw-Hill Education.
  • 2. • In this section, the following objective will be covered: • List the characteristics of a carbon atom that allow it to form a variety of molecules. 3.1 ORGANIC MOLECULES
  • 3. Organic Chemistry • Biological molecules • Organic molecules contain carbon and hydrogen • Inorganic molecules do not contain a combination of carbon and hydrogen (H2O and NaCl)
  • 4. THE CARBON ATOM • Total of six electrons—4 in outer shell • Almost always shares electrons with nonmetal elements such as hydrogen, nitrogen, and oxygen • Can bond with as many as 4 other elements • Most often shares electrons with other carbon atoms • Hydrocarbons—chains of carbon atoms bonded only to hydrogen atoms • Isomers—same number and kinds of atoms in a variety of arrangements • May have different properties due to different shape
  • 5. HYDROCARBONS ARE HIGHLY VERSATILE Carbon chains can vary in length, and/or have double bonds, and/or be branched. Carbon chains can from rings of different sizes and have double bonds.
  • 6. CARBON MOLECULES • Size and shape of carbon skeleton or backbone can vary drastically • Functional group—specific combination of bonded atoms that always has the same chemical properties and always reacts the same way • Reactivity of organic molecule largely dependent on attached functional groups • Often use R to stand for the rest of the molecule
  • 7. COMMON FUNCTIONAL GROUPS Group Structure Found In Hydroxyl Alcohols, sugars Carboxyl Amino acids, fatty acids Amino Amino acids, proteins Sulfhydryl Amino acid cysteine, proteins Phosphate R = remainder of molecule ATP, nucleic acids
  • 8. ORGANIC MOLECULES SERVE AS STRUCTURAL MATERIALS IN LIVING ORGANISMS a: © SuperStock/Alamy; b: © Science Photo Library/Alamy Stock Photo RF; c: © Zeljko Radojko/Getty Images; d: Design Pics/Bilderbuch RF Will & Deni Mclntyre/Science Source
  • 9. • In this section, the following objectives will be covered: • Summarize the structure and function of each category of carbohydrates. • Summarize the structure and function of each category of lipids. • Summarize the structure and function of proteins. • Summarize the two categories of nucleic acids and describe their biological functions. 3.2 THE BIOLOGICAL MOLECULES OF CELLS
  • 10. MACROMOLECULES AKA BIOMOLECULES •4 categories: • Carbohydrates • Lipids • Proteins • Nucleic Acids
  • 11. BIOMOLECULE BASICS • Monomers—subunits or building blocks of the large molecule • Polymer—monomers joined together to form a large molecule • Dehydration synthesis reactions join monomers to form polymers • Equivalent of removing a water molecule • Hydrolysis reactions break polymers apart into monomers • Equivalent of adding a water molecule
  • 14. CARBOHYDRATES • Almost universally used as immediate energy source in living things • Play structural roles • Polymers of monomers called saccharides or sugars • Monosaccharide, disaccharide, polysaccharide
  • 15. CARBOHYDRATES • Monosaccharides • Single sugar molecule • Simple sugars • 3–7 carbon backbone • Glucose C6H12O6 • 2 isomers—fructose and galactose • Cells use glucose as the energy source of choice. • Ribose and deoxyribose are found in RNA and DNA.
  • 16. GLUCOSE 𝐂 𝟔 𝐇 𝟏𝟐 𝐎 𝟔
  • 17. DISACCHARIDES • Disaccharides • 2 monosaccharides bonded together • Maltose—yeast breaks down maltose in beer for energy and produces ethyl alcohol • Fermentation • Sucrose—table sugar
  • 19. POLYSACCHARIDES • Polysaccharides are energy storage molecules • Polymers of monosaccharides • Some function as energy storage molecules. • Plants store glucose as starch. • Animals store glucose as glycogen. • Some function as structural components. • Cellulose—plant cell walls • Most abundant of all organic molecules • Digested only by some microbes • Chitin—crab, lobster, insect exoskeletons
  • 24. LIPIDS • All are insoluble in water • Long nonpolar hydrocarbon chains • Relative lack of hydrophilic functional groups • Very diverse structures and functions • Fats and oils used for long-term energy storage • Oil may help waterproof skin, hair, and feathers.
  • 25. TRIGLYCERIDES • Fats and oils • Triglycerides are composed of 1 glycerol and 3 fatty acids.
  • 27. SATURATED OR UNSATURATED FATS • Fatty acids are either: • Saturated—no double bonds between carbon atoms • Butter is solid at room temperature. • Unsaturated—one or more double bonds between carbon atoms • Oil is liquid at room temperature. • Trans fatty acids have been artificially hydrogenated to make them more solid.
  • 31. LIPIDS IN CELLS • Phospholipids • Form the bulk of the plasma membrane • One end of the molecule is water- soluble. • Polar phosphate head • Other end of the molecule is not water- soluble. • Nonpolar fatty acid tails
  • 33. STEROIDS • Lipids made of 4 fused rings • Not fatty acids but are insoluble in water • Derived from cholesterol • Differ only in functional groups
  • 36. PROTEINS • Proteins are composed of amino acid monomers • Central carbon bonded to hydrogen atom, amino group, carboxyl group, and a side chain, or R group • 20 different amino acids • Differ according to R group • Many functions: support, metabolism, transport, defense, regulation, and motion This Photo by Unknown Author is licensed under CC BY
  • 38. AMINO ACIDS AND PEPTIDES • Peptide—two or more amino acids covalently linked • Peptide bond—formed by dehydration reaction between two amino acid monomers • Polypeptide—chain of many amino acids joined by peptide bonds • Amino acid sequence determines the final three-dimensional shape of protein This Photo by Unknown Author is licensed under CC BY
  • 40. SHAPE OF PROTEINS • Function is determined by three- dimensional shape • Denature: Loss of structure and function; usually due to pH or temperature change • Primary structure—amino acid sequence • Secondary structure—portions of chain form helices or pleated sheets • Tertiary structure—overall three- dimensional shape of interacting secondary structures • Quaternary structure—more than one polypeptide chain interacting
  • 41. LEVELS OF PROTEIN ORGANIZATION – PRIMARY PRIMARY STRUCTURE: SEQUENCE OF AMINO ACIDS
  • 46. NUCLEIC ACIDS • Deoxyribonucleic acid (DNA) • Stores genetic information • Ribonucleic acid (RNA) • Helps to make proteins • Polymers of nucleotide monomers • Nucleotide composed of a phosphate, 5-carbon sugar, and nitrogen-containing base • 5 types of bases—adenine (A), guanine (G), cytosine (C), and thymine (T) [DNA only], Uracil (U) [RNA only] This Photo by Unknown Author is licensed under CC BY-ND
  • 47. NUCLEOTIDE STRUCTURE NUCLEOTIDE: PHOSPHATE, SUGAR AND NITROGEN-CONTAINING BASE
  • 48. STRUCTURE OF DNA • DNA- Genetic information stored in sequence of bases • Deoxyribose as sugar • Double helix • Complementary base pairing • Adenine (A) with thymine (T) • Cytosine (C) with guanine (G)
  • 49. DNA STRUCTURE DNA STRUCTURE WITH BASE PAIRS: G WITH C AND A WITH T
  • 50. RNA BASES • RNA • Ribose as sugar • Single-stranded • Uses uracil (U) instead of thymine (T) This Photo by Unknown Author is licensed under CC BY-ND
  • 51. RNA STRUCTURE RNA STRUCTURE WITH BASES G, U, A, C
  • 52. CONNECTING PROTEINS AND NUCLEIC ACIDS • Sequence of bases in DNA determines sequence of amino acids in a protein. • Sequence of amino acids determines a protein's structure and function. • Small changes in the DNA may cause large changes in a protein. • Sickle-cell disease • Individual’s red blood cells are sickle- shaped • One amino acid difference • Inherited disease
  • 54. CHAPTER 3 OBJECTIVE SUMMARY • You Should now be able to: • 1. List the characteristics of a carbon atom that allow it to form a variety of molecules. • 2. Summarize the structure and function of each category of carbohydrates. • 3. Summarize the structure and function of each category of lipids. • 4. Summarize the structure and function of proteins. • 5. Summarize the two categories of nucleic acids and describe their biological functions.