This document discusses the roles of metal ions in biology. Many metals act as active sites in enzymes, with iron, zinc and copper being especially important. Metals are classified as essential if required for life or nonessential. The s-block metals like sodium, potassium, magnesium and calcium help maintain electrical charges and osmotic pressure. The d-block metals serve as cofactors in many enzymes due to their ability to accept and donate electrons. Metal ions fulfill critical functions in processes like oxygen transport, bone formation, muscle contractions and more.
Bioinorganic Chemistry-Introduction,
Essential Elements,Functions of metal ions in biochemical process.Biochemistry Of Iron,Haemoglobin And Myoglobin,Biological Functions And Toxicity Of Some Elements
Bioinorganic Chemistry-Introduction,
Essential Elements,Functions of metal ions in biochemical process.Biochemistry Of Iron,Haemoglobin And Myoglobin,Biological Functions And Toxicity Of Some Elements
Non-heme oxygen carrier proteins, Hemocyanin, Copper containing metalloprotein, Active site of deoxyhemocyanin and oxyhemocyanin, Oxidative addition of dioxygen, peroxide bridging, antiferromagnetic, Hemerythrin, Active site structure of deoxyhemerythrin and oxyhemerythrin, Comparison between hemoglobin, hemerythrin and hemocyanin
what is metal allyl complex
what is the definition of metal allyl complex
what are synthesis of metal allyl complex
what are reaction of metal allyl complex
summary of metal allyl complex
Metalloporphyrins with special reference to Iron porphyrins ( Haemoglobin and...ADITYA ARYA
Metalloporphyrins with special reference to Iron
porphyrins ( Haemoglobin and Myoglobin )
Porphyrins are one of the most important groups of
bioinorganic compounds in which a metal ion is
surrounded by the four nitrogens of porphin ring.
❑ Porphines are made of four pyrrole rings linked
together through methene bridges.
❑ Therefore, porphines have macrocylic pyrrole system
with conjugated double bonds as shown here:
❑ These porphines act as tetradentate ligands with four
nitrogen donor sites.
Two of these are tertiary nitrogen donor positions which can form
coordinate bonds by donating a pair of electrons each to the metal
ion.
❑ The other two are secondary nitrogen donor positions. each of
which lose a proton in forming a coordinate bond with a metal
ion.
❑ Thus, a porphin ring acts as a tetradentate dinegative ligand (or
dianion).
❑ Dipositive cations such as Mg2+ Fe2+ or Ni2+ are capable of
forming neutral complexes with porphine as shown here:
❑ Four pyrrole rings of porphin carrying substituents other than hydrogen
are called porphyrins. The complexes in which a metal ion is held in
the porphyrin ring system are called metalloporphyrins.
❑ Such complexes play a vital role in biological systems.
Dioxygen complexes, dioxygen as ligand Geeta Tewari
This presentation describes about the preparation, properties, bonding modes, classification and applications of metal Dinitrogen Complexes. Also explains the MO diagram of molecular nitrogen.
Essential & trace elements pharmaceutical inorganic chemistry b. pharmacy...AZCPh
Topic of Essential & trace elements in Pharmaceutic Inorganic Chemistry
Helpful for pharmacy students
Prepared as per GTU 1st Semester B. Pharmacy Syllabus
Non-heme oxygen carrier proteins, Hemocyanin, Copper containing metalloprotein, Active site of deoxyhemocyanin and oxyhemocyanin, Oxidative addition of dioxygen, peroxide bridging, antiferromagnetic, Hemerythrin, Active site structure of deoxyhemerythrin and oxyhemerythrin, Comparison between hemoglobin, hemerythrin and hemocyanin
what is metal allyl complex
what is the definition of metal allyl complex
what are synthesis of metal allyl complex
what are reaction of metal allyl complex
summary of metal allyl complex
Metalloporphyrins with special reference to Iron porphyrins ( Haemoglobin and...ADITYA ARYA
Metalloporphyrins with special reference to Iron
porphyrins ( Haemoglobin and Myoglobin )
Porphyrins are one of the most important groups of
bioinorganic compounds in which a metal ion is
surrounded by the four nitrogens of porphin ring.
❑ Porphines are made of four pyrrole rings linked
together through methene bridges.
❑ Therefore, porphines have macrocylic pyrrole system
with conjugated double bonds as shown here:
❑ These porphines act as tetradentate ligands with four
nitrogen donor sites.
Two of these are tertiary nitrogen donor positions which can form
coordinate bonds by donating a pair of electrons each to the metal
ion.
❑ The other two are secondary nitrogen donor positions. each of
which lose a proton in forming a coordinate bond with a metal
ion.
❑ Thus, a porphin ring acts as a tetradentate dinegative ligand (or
dianion).
❑ Dipositive cations such as Mg2+ Fe2+ or Ni2+ are capable of
forming neutral complexes with porphine as shown here:
❑ Four pyrrole rings of porphin carrying substituents other than hydrogen
are called porphyrins. The complexes in which a metal ion is held in
the porphyrin ring system are called metalloporphyrins.
❑ Such complexes play a vital role in biological systems.
Dioxygen complexes, dioxygen as ligand Geeta Tewari
This presentation describes about the preparation, properties, bonding modes, classification and applications of metal Dinitrogen Complexes. Also explains the MO diagram of molecular nitrogen.
Essential & trace elements pharmaceutical inorganic chemistry b. pharmacy...AZCPh
Topic of Essential & trace elements in Pharmaceutic Inorganic Chemistry
Helpful for pharmacy students
Prepared as per GTU 1st Semester B. Pharmacy Syllabus
The human body contains elements that can be classified as
abundant elements trace elements
What are the trace elements
Essential trace element
Biological Significance of Trace Elements
Redox and non-redox metalloenzymes - Introduction and examples , Copper blue proteins - Classifications and examples, structure and mechanistic action of ascorbic acid oxidase; Peroxide and superoxide scavenger enzymes: Structure and Reactivity of superoxide dismutase, catalase and peroxidase
nickel in food trace element absorption transport and storageRapidAcademy
Avoid all foods that are routinely high in nickel content such as cocoa, chocolate, soya beans, oatmeal, nuts, almonds and fresh and dried legumes. Avoid all drinks and vitamin supplements with nickel and canned food.
Removal of Heavy Metals from Aqueous Solution Using Ion Exchange Resin MBHPE-TKPijsrd.com
The aim of this study is to synthesis of TKP (MBHPE-TKP) resin for the removal of heavy metals from aqueous solution. Ion exchange resins are polymers that are capable of exchanging particular ions within the polymer with ions in a solution that is passed through them. This ability is also seen in various natural systems such as soils and living cells. The synthetic resins are used primarily for purifying water, but also for various other applications including separating out some elements. Factorial design of experiments is employed to study the effect of above factors pH, time and sorbent used. The new synthesized resins i.e. MBHPE–TKP is hydrophilic and biodegradable, so after effluent treatment used resins can be disposed off without facing any environmental problem .This study focuses on synthesis of new cation exchange resin (MBHPE – TKP) and developing method for treatment of highly contaminated industrial effluents.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
ANAMOLOUS SECONDARY GROWTH IN DICOT ROOTS.pptxRASHMI M G
Abnormal or anomalous secondary growth in plants. It defines secondary growth as an increase in plant girth due to vascular cambium or cork cambium. Anomalous secondary growth does not follow the normal pattern of a single vascular cambium producing xylem internally and phloem externally.
BREEDING METHODS FOR DISEASE RESISTANCE.pptxRASHMI M G
Plant breeding for disease resistance is a strategy to reduce crop losses caused by disease. Plants have an innate immune system that allows them to recognize pathogens and provide resistance. However, breeding for long-lasting resistance often involves combining multiple resistance genes
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
Nucleophilic Addition of carbonyl compounds.pptxSSR02
Nucleophilic addition is the most important reaction of carbonyls. Not just aldehydes and ketones, but also carboxylic acid derivatives in general.
Carbonyls undergo addition reactions with a large range of nucleophiles.
Comparing the relative basicity of the nucleophile and the product is extremely helpful in determining how reversible the addition reaction is. Reactions with Grignards and hydrides are irreversible. Reactions with weak bases like halides and carboxylates generally don’t happen.
Electronic effects (inductive effects, electron donation) have a large impact on reactivity.
Large groups adjacent to the carbonyl will slow the rate of reaction.
Neutral nucleophiles can also add to carbonyls, although their additions are generally slower and more reversible. Acid catalysis is sometimes employed to increase the rate of addition.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...Sérgio Sacani
Context. With a mass exceeding several 104 M⊙ and a rich and dense population of massive stars, supermassive young star clusters
represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions
among stars.
Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate
the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars.
The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun.
Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically,
the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec.
Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within
and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation
were carried out using the ACIS-Extract software.
Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a
photon flux threshold of approximately 2 × 10−8 photons cm−2
s
−1
. The X-ray sources exhibit a highly concentrated spatial distribution,
with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known
massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217.
4. A COMPLEX LIFE…
Life’s a metal ion
Metals from s- and d- block acts as active sites in
majority of the enzymes
Fe , Zn and Cu
Metal-containing biomolecules-very much
important
7. ESSENTIAL ELEMENTS
• Required for the maintenance of life of plants &
animals
• Absence causes death or severe malfunction
NON ESSENTIAL ELEMENTS
• Don’t play any positive role in biological systems
8.
9. TOXIC ELEMENTS
ELEMENTS AVERAGE
QTY (mg)
EXCESS OF QUANTITY
As 18 cancerous
Sn 6.0 cancerous
Bi 0.2 cancerous
Te 0.1 cancerous
Pb 121 Plumbism
Cd 5.0 High B.P.
Sb 8.0 Poisoning
Be 0.04 Causes heart disease
Cr (VI) 1.5 cancerous
11. METAL IONS IN BIOLOGY
Occur in several forms
Most advanced class- Metalloenzymes or
BIOLOGICAL CATALYSTS
Specific role
Major- d-block elements
But s-block elements are also important –
-Structural role (Ca)
-Enzymatic action(Mg)
-Homeostatic balance (Na & K)
14. s-block metals
Bulk metals- K, Na, Mg and Ca
Maintain electrical charges
Osmotic pressure
Prevents the cells from collapsing by making it
turgid
15. Na+
Major cation of the extracellular fluid
Creates electrical potential for the functioning of
nerve cells & muscle cells
Na+ - 0.01 M
Na+ ions also serves as essential activating ions for
specific enzyme activity
Associated with acid-base balance
16. K+
K – 0.15 M
Electrolytic balance
Proper functioning of heart
Maintainenance of blood pressure
Nerve impulses
Aids in the waste removal process
Enhances the muscle functioning
In the synthesis of ribosomes
17. TRANSPORTATION OF IONS
• Charged Ions must pass through a Hydrophobic
Membrane
– Neutral gases (O2, CO2) and low charge density
ions (anions) can move directly through the
membrane
– High charge density cations require help
18. MECHANISMS
• Ionophores: special carrier molecules that wrap
around metal ions so they can pass through the
membrane by diffusion
• Ion Channels: large, membrane-spanning
molecule that form a hydrophilic path for
diffusion
• Ion Pumps: molecules using energy to transport
ions in one direction through a membrane
19. TYPES
• Passive Transport: moves ions down the concentration
gradient, requiring no energy source
– Ionophores and Ion Channels are Passive
• Active Transport: moves ions against the concentration
gradient, requiring energy from ATP hydrolysis
– Ion Pumps are Active
• Choice of Transport Mechanism
– Charge
– Size
– Ligand Preference
20. Sodium and Potassium Ion Pump
• Na+/K+-ATPase
– Membrane-Spanning Protein Ion Pump
– a2b2 tetrameric 294,000 dalton protein
– Conformational changes pump the ions: one
conformation binds Na+ best, the other binds K+ best
– Hydrolysis of ATP provides the energy for conformational
changes (30% of a mammal’s ATP is used in this reaction)
– Antiport transport: like charged ions are transported in
opposite directions
– Reversing the normal reaction can generate ATP
– Reaction can occur 100 time per second
– 3Na+in + 2Kout
+ + ATP4- + H2O 3Na+out + 2K+in + ADP3-
+ HPO4
2- + H+
21. Sodium and Potassium--Ionophore
• Nonactin: microbial Na+ and K+ ionophore
• Makes Na+ and K+ membrane soluble when complexed
• Oxygen Donors can be modeled by Crown Ethers
OOO
O
O O O
O
CH3
O
CH3
CH3
O CH3
CH3
O
CH3CH3
OCH3
22. Sodium and Potassium--Ion Channel
• Gramicidin: ion channel-forming molecule
– Helical peptide dimer
– Hydrophobic outer surface interacts with membrane
– Carbonyls and Nitrogens on inner surface can interact
with cations as they pass through
– Potassium selective: pore size and ligands select for K+
• Channels can be Voltage-Gated or activated by the
binding of a Chemical Effector which changes the
conformation
• 107-108 ion/second may pass (Emem = 100 mV)
23.
24. Mg2+
Mg2+
- chlorophyll
- intracellular fluids
- carbohydrate metabolism
- enhances nerve impulses
(extracellular fluid)
- Active site of transferase,
phosphohydrase
25. Ca2+
-Bone formation
-- Brain functioning
-Maintains the heart rhythm
-- Blood clotting
-Formation of teeth enamel (fluoroapatite)
-1000 times less in intracellular fluids
28. VANADIUM
- extremely small amounts
- lichens & fungi have it in the active site of enzymes
- appears in nitrogenase, vanadium (v) in
haloperoxidases
CHROMIUM
Cr(III) – mammals
- lipid and glucose metabolism
- glucose tolerance
Cr(VI) & Cr(V) – mutagenic and carcinogenic, Cr(V)
damages DNA
- normal secretion of insulin
29. MANGANESE
- in wider range of organisms
- in important enzymes and
processes(photosynthesis)
- Mn (II) and Mn(III) have
redox role
Eg: In the enzyme superoxide
dismutase (SOD)
30. IRON
- Truly ubiquitous
- Required for tissue growth
- Responsible for oxygen transport
- In humans Hb & Mb represent 65% & 6% of all Fe in
body
- Ferritin- rapid access to Fe
31. SOMETHING ABOUT FERRITIN
• Structure:
– symmetric, spherical protein coat of 24 subunits
• Subunits are 175 amino acids, 18,500 daltons each
• Channels on 3-fold axes are hydrophilic: iron entry
• Inside surface is also hydrophilic
– Inner cavity
• 75 Å inner diameter holds 4500 iron atoms
• Iron stored as Ferrihydrate Phosphate
[(Fe(O)OH)8(FeOPO3H2) . nH2PO4]
– Iron-protein interface: binding of core to protein is
believed to be through oxy- or hydroxy- bridges
32.
33. Pathway of Fe2+ from food stuffs to Hb and ferritin
involves the following mechanism
34. COBALT
- essential in small amounts
- cobalamines are found in many organisms (5 mg
in humans)
-enzymes with inert Co (III) has been discovered,
provides labile reaction sites
- extremely toxic to plants
NICKEL
- An important component in urease,
carbonmonoxide dehydrogenase and methyl-S-
coenzyme M reductase
- Exists in oxidation states like I , II, III
35. COPPER
- present at the active site of a large
number of enzymes
- 3rd most abundant transition element
- as electron transfer agents
Eg: cytochrome C oxidase , tyrosinase,
nitrite reductase
- blue copper proteins(type-1)
- in Hb formation
36. ZINC
- Adults 2-3 g
- carbonic anhydrase, carboxypeptidase
- 300 known enzymes
- DNA binding proteins
- zinc reserves
- Maintains normal concentration of Vit-A
- Tissue repairing & wound healing
37.
38. Symptoms of Elemental Deficiency in Humans
__________________________________________________________
Ca Retarded skeletal growth
Mg Muscle cramps
Fe Anemia, immune disorders
Zn Stunted growth, skin damage, retarded maturation
Cu Liver disorders, secondary anemia
Mn Infertility, impaired skeletal growth
Mo Retarded cellular growth
Co Pernicious anemia
Ni Depressed growth, dermatitis
Cr Diabetes symptoms
Si Skeletal growth disorders
F Dental disorders
I Thyroid disorders
Se Cardiac muscular weakness
As Impaired growth (in animals)
________________________________________________________
39. ULTRATRACE ELEMENTS
Needed at less than 1 ppm or 50 ppb
Includes As, B, Si, Ni, V in humans
Other elements include Br, Cd , F , Pb , Li, Sn
Quite toxic at any concentration much above
concentrations ultra trace level
41. CONCLUSION
Life evolved utilizing these elements that are
abundant & available to it and became
dependent upon them
Rare elements are not utilized….
42. REFERENCE
Huheey J E, Keiter A Ellen, Keiter L Richard, Medhi K Okhil, “Inorganic
Chemistry-Principles of Structures and Reactivity”, 4th edition, Pearson
Lawrance A Geoffrey, “Introduction to Coordination Chemistry”,2010,
Wiley
Puri, Sharma and Kalia, “Principles of Inorganic Chemistry”,31st edition,
Milestone
J D Lee, “Concise Inorganic Chemistry” , 5th edition, Wiley