Bacteria are microscopic, single-celled organisms that thrive in diverse environments. These organisms can live in soil, the ocean and inside the human gut. Humans' relationship with bacteria is complex. Sometimes bacteria lend us a helping hand, such as by curdling milk into yogurt or helping with our digestion.
Fungi is most abundantly found organism in earth, almost all parts of earth we found earth, here we represent some characteristic with their uses and disadvantages .
Fungi are eukaryotic organisms that include microorganisms such as yeasts, moulds and mushrooms. These organisms are classified under kingdom fungi.
Bacteria are microscopic, single-celled organisms that thrive in diverse environments. These organisms can live in soil, the ocean and inside the human gut. Humans' relationship with bacteria is complex. Sometimes bacteria lend us a helping hand, such as by curdling milk into yogurt or helping with our digestion.
Fungi is most abundantly found organism in earth, almost all parts of earth we found earth, here we represent some characteristic with their uses and disadvantages .
Fungi are eukaryotic organisms that include microorganisms such as yeasts, moulds and mushrooms. These organisms are classified under kingdom fungi.
Bacteriophage- types, structure and morphology of t4 phage, morphogenesisDr. Dinesh C. Sharma
Escherichia virus T4 is a species of bacteriophages that infect Escherichia coli bacteria. It is a member of virus subfamily Tevenvirinae (not to be confused with T-even bacteriophages, which is an alternate name of the species). T4 is capable of undergoing only a lytic lifecycle and not the lysogenic lifecycle.
inroduction:Plant viruses are viruses that affect plants.
Pathogenic to higher plants.
. Harmless to human and other animals.
Reduce plant crop yield and quality of crops.
Some may be able to multiply within the bodies
Of aphids and nematodes.
History:Beijernick ( 1897) coined the latin name “VIRUS” meaning Poison. He studied plant juices and found they caused healthy plants to become sick.
Wendell Stanley (1935) crystallized sap from sick Tobacco plants. He discovered viruses were made of nucleic acids and proteins.
Geminivirus:one of the family of plant virus.
Currently over 360 species in this family, divided among 9 genera.
Diseases associated with this family include bright yellow mosaic , yellow mosaic, yellow mottle, leaf curling, stunting, streaks, reduced yields.
Ss circular dna diverge in both directions from a virion strand origin of replication (AMBISENSE).
Virus Classification:Group – Group II (ssDNA)
Order - Unassigned
Family - Geminiviridae
Genera – Becurtovirus Grablovirus
Begomovirus Mastrevirus
Capulavirus Topocuvirus
curtovirus Turncurtovirus
Eragrovirus
Structure: have Circular single-stranded DNA.
Genome is either in two segments.
The non-segmented genome is 2500-3000 nucleotides long, and the segmented genome is 4800-5600 nucleotides long.
The genome encodes for both structural and non-structural proteins.
In geminivirus, both segments must be transmitted to the host for a full systemic infection to occur.
Virion Sturcture:Geminivirus are non-enveloped, icosahedral virions that consists of a capsid.
The capsid is germinate, or twinned, and consists of 22 Capsomers.
The capsid is 30nm long and has a diameter of 18-20nm.
Symptoms:the time of infection, the virus strains and the presence of mixed infections.
Common symptoms are stunting, curling, and twisting of leaves.
Short internodes and stunted appearance , no apical growth caused by early infection.
Replication:Geminivirus encodes only a few proteins, thus they need to dependent host cell factors for replication.
These factors are DNA polymerase and repair polymerase to amplify their genome.
Replicate by a rolling circle mechanism like bacteriophages such as M13, and many plasmids.
Introduction :
Mycorrhizae are mutualistic symbiotic associations formed between the roots of higher plants and fungi.
Fungal roots were discovered by the German botanist A B Frank in the last century (1855) in forest trees such as pine.
In nature approximately 90% of plants are infected with mycorrhizae. 83% Dicots,79% Monocots and 100% Gymnosperms.
Convert insoluble form of phosphorous in soil into soluble form.
This presentation includes all the general characteristics of fungi, types, structure of a fungi, classifications, and reproduction. Different types of fungi and its classification, its reproduction are all included.
Viruses that infect bacteria.
Occur widely in nature in close association with bacteria.
Readily isolated from faeces, sewage and other natural sources.
Tadpole shaped, with hexagonal head and a cylindrical tail.
Head consists of a tightly packed core of ds DNA surrounded by a protein coat or capsid.
The tail composed of a contractile sheath surrounding the hollow core
Terminal base plate having prongs or tail fibres attached.
Bacteriophage- types, structure and morphology of t4 phage, morphogenesisDr. Dinesh C. Sharma
Escherichia virus T4 is a species of bacteriophages that infect Escherichia coli bacteria. It is a member of virus subfamily Tevenvirinae (not to be confused with T-even bacteriophages, which is an alternate name of the species). T4 is capable of undergoing only a lytic lifecycle and not the lysogenic lifecycle.
inroduction:Plant viruses are viruses that affect plants.
Pathogenic to higher plants.
. Harmless to human and other animals.
Reduce plant crop yield and quality of crops.
Some may be able to multiply within the bodies
Of aphids and nematodes.
History:Beijernick ( 1897) coined the latin name “VIRUS” meaning Poison. He studied plant juices and found they caused healthy plants to become sick.
Wendell Stanley (1935) crystallized sap from sick Tobacco plants. He discovered viruses were made of nucleic acids and proteins.
Geminivirus:one of the family of plant virus.
Currently over 360 species in this family, divided among 9 genera.
Diseases associated with this family include bright yellow mosaic , yellow mosaic, yellow mottle, leaf curling, stunting, streaks, reduced yields.
Ss circular dna diverge in both directions from a virion strand origin of replication (AMBISENSE).
Virus Classification:Group – Group II (ssDNA)
Order - Unassigned
Family - Geminiviridae
Genera – Becurtovirus Grablovirus
Begomovirus Mastrevirus
Capulavirus Topocuvirus
curtovirus Turncurtovirus
Eragrovirus
Structure: have Circular single-stranded DNA.
Genome is either in two segments.
The non-segmented genome is 2500-3000 nucleotides long, and the segmented genome is 4800-5600 nucleotides long.
The genome encodes for both structural and non-structural proteins.
In geminivirus, both segments must be transmitted to the host for a full systemic infection to occur.
Virion Sturcture:Geminivirus are non-enveloped, icosahedral virions that consists of a capsid.
The capsid is germinate, or twinned, and consists of 22 Capsomers.
The capsid is 30nm long and has a diameter of 18-20nm.
Symptoms:the time of infection, the virus strains and the presence of mixed infections.
Common symptoms are stunting, curling, and twisting of leaves.
Short internodes and stunted appearance , no apical growth caused by early infection.
Replication:Geminivirus encodes only a few proteins, thus they need to dependent host cell factors for replication.
These factors are DNA polymerase and repair polymerase to amplify their genome.
Replicate by a rolling circle mechanism like bacteriophages such as M13, and many plasmids.
Introduction :
Mycorrhizae are mutualistic symbiotic associations formed between the roots of higher plants and fungi.
Fungal roots were discovered by the German botanist A B Frank in the last century (1855) in forest trees such as pine.
In nature approximately 90% of plants are infected with mycorrhizae. 83% Dicots,79% Monocots and 100% Gymnosperms.
Convert insoluble form of phosphorous in soil into soluble form.
This presentation includes all the general characteristics of fungi, types, structure of a fungi, classifications, and reproduction. Different types of fungi and its classification, its reproduction are all included.
Viruses that infect bacteria.
Occur widely in nature in close association with bacteria.
Readily isolated from faeces, sewage and other natural sources.
Tadpole shaped, with hexagonal head and a cylindrical tail.
Head consists of a tightly packed core of ds DNA surrounded by a protein coat or capsid.
The tail composed of a contractile sheath surrounding the hollow core
Terminal base plate having prongs or tail fibres attached.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
2. Actinomycetes
• Actinomycetes belong to the group of prokaryotic, Gram-positive
bacteria those are having a filamentous structure. Its filamentous
structure resembles the fungal mycelium, which consists of a highly
dense and filamentous network.
• Due to the filamentous structure of actinomycetes, it is also termed
as thread or ray bacteria.
• The cell wall and the internal structure of the actinomycetes are
similar to the group of bacteria. Thus, actinomycetes refer to the
filamentous actinobacteria that serve as a connecting link between
the bacteria and fungi and shows resemblance with both.
• They include members like Mycobacterium, Corynebacterium,
Streptomyces, and Actinomyces. The diameter of an actinomycete
cell is much smaller (1-2 µm) than the branched fungi (ranges
between 5 µm-10 µm).
biologyreader.com
3. • They are the true bacteria (not fungus)
• Placed in the kingdom “Bacteria” and a class “Actinobacteria”.
• They are ubiquitous in nature (commonly found in soil).
• They are also very common in marine habitat and considered as a treasure
house of secondary metabolites.
• Actinomycetes behave like decomposers, which carry out the degradation of
organic compounds like chitin, complex sugars, hemicellulose etc.
• Its filamentous forms are predominantly aerobic, while a few are anaerobic.
• They can produce a filamentous, dense, branched and raised colony over the
substrate like fungi.
• The filamentous forms of actinomycetes are aerobic and they may produce
spore singly or in chains. Its colony appears as a pigmented powdery mass
due to the formation of aerial spores.
4. Classification:
Domain: Bacteria
Phylum: Actinobacteria
Class: Actinobacteria
Order: Actinomycetales
Family: Actinomycetaceae
Characteristics
Actinomycetes share the following physicochemical properties:
1.Actinomycetes usually have 1-2 µm diameter.
2.They generally possess a rod shape with a filamentous or branched structure.
3.The filaments contain mumaric acid.
4.Most of the species are aerobic, while a few are anaerobes to facultative aerobes.
5.Cell wall and internal structures are similar to bacteria. The cell wall of actinomycetes consists
of mycolic acid.
6.The growth or reproduction of actinomycetes is slower than the bacteria and fungi. Hence,
actinomycetes are sometimes called as “Slow growers”.
7.They are having 60-78% of G+C content.
8.Actinomycetes are most abundant in soil (106-108g) and marine habitat.
9.The majority of species are usually non-motile, non-capsulated and non-acid fast.
10.They show optimum growth at alkaline pH.
11. Colony is hard to pick from media plate and you may actinomycetes plate has earthy odor/ smell.
Science source
6. Life Cycle of Actinomycetes
Their life cycle includes the following stages:
1.Germination: The spores of actinomycetes remain dispersed in the environment as a “Free spore”. Free spore
remains dormant until the stage of germination. When the spores get favourable conditions, they start the
germination process by forming a germ tube.
2.Vegetative growth: The germ tube promotes vegetative growth, which eventually gives rise to the substrate
and aerial hyphae. First, a germ tube will produce a primary mycelium, i.e. substrate hyphae that grow within the
media. After the growth of primary mycelium, a secondary mycelium, i.e. aerial hyphae forms above the
substratum.
3.Coiling: During unfavourable conditions, the aerial hyphae turn into a spiral shape.
4.Septation: At this stage, a septum forms between the vegetative hyphae.
5.Spore maturation: A septum within the vegetative hyphae maturates and forms a
chain of spores. Thus, the spores originate via fragmentation or swelling of the hyphae.
6.Release of spore: During unfavourable conditions, the spores detach from the
vegetative hyphae and remain free in the environment.
7. Classification
Actinomycetes have seven families, based on the hyphal and reproductive structures.
1.Streptomycetaceae: Members of this family consist of non-segmented hyphae and 5-50 conidial spores
per chain of aerial hyphae. Examples: Streptomyces, Microdlobaspone and Sporoctilhya.
2.Nocardiaceae: Members of this family possess typical non-segmented hyphae.
Examples: Nocardia, Pseudonocardia.
3.Micromonosporaceae: Members of this family possess typical non-segmented conidia that generally exist
singly, in pairs or in chains. Examples: Micromonospora, Thermonospora, Thermoactinomycetes, Actinobifida.
4.Actinoplanaceae: Members of this family have sporangiospores and hyphae (0.2-2.0 µm wide).
Examples: Streptosporangium, Actinoplanes, Plasmobispora and Dactylosporangium.
5.Dermatophilaceae: Members of this family possess hyphae that undergo fragmentation to give rise to a
large number of motile structures. Examples: Geodermatophilus.
6.Frankiaceae: Members of this family are strictly associated with the roots of a non-leguminous plant and
help in nitrogen fixation by forming root nodules. Example: Frankia.
7.Actinomycetaceae: The members of this family do not contain true mycelium and are facultative
anaerobes. Examples: Actinomyces.
8. Image source: Research gate
Type of spore-bearing structure in streptomycetes
Essaid Ait Barka, Parul Vatsa, Lisa Sanchez, Nathalie Gaveau-Vaillant, Cedric
Jacquard, Hans-Peter Klenk, Christophe Clément, Yder Ouhdouch, Gilles P. van
Wezel
Image source: mmbr.asm.org
Taxonomy, Physiology, and Natural Products of Actinobacteria
10. Economic Importance
Use in Bioremediation
• Actinomycetes digest complex carbohydrates like chitin, cellulose,
hemicellulose etc.
• It also helps in the degradation of toxic compounds from the
environment.
• Thus, it plays an essential role in the bioremediation of organic
compounds.
• Actinomycetes can survive in a harsh environment like high
temperature up to 50 degrees Celsius that is crucial for
the composting process.
Use in Regulating Plant growth
• Actinomycetes inhabit the soil and produce
phytohormones, extracellular enzymes and bioactive
compounds.
• These compounds promote direct plant growth and
protect against phytopathogens and pests by producing
indole 3-acetic acid, siderophore and solubilize
phosphate.
11. Biomedical Use
Members of actinomycetes can produce many of the best-known antibiotics like Amphotericin, Neomycin,
Novobiocin, Chloramphenicol, Tetracycline etc.
•Tetracycline and Erythromycin etc. target bacterial ribosomes and cures respiratory infections.
•Vancomycin mainly attacks the bacterial cell wall of pathogenic bacteria (Streptococcus aureus).
•Rifampicin targets bacterial RNAP (RNA-Polymerase) and cures tuberculosis and leprosy.
•Adriamycin treats cancer.
•Amphotericin attacks fungal membranes and shows a few side effects.
•Rapamycin enables organ transplant.
Industrial Use
Actinomycetes produce several enzymes, which show a wide range of applications in different fields
like:
•Lipase in detergent and pharmaceuticals industries.
•Cellulases in the animal feed industry.
•Catalase in the detergent industry.
•Amylase in food, textile and paper industries.
•Chitinase in biochemical industries.
12. Use as Agro-active compounds
• Actinomycetes produce agro-active compounds as they are extensively present in the rhizospheric zone
of the plant. Thus, they can actively colonize themselves with the plant roots and protect the plant from
pathogenic fungi and other phytopathogens.
• Frankia is an example of actinomycetes, which acts as a “Symbiont” that promote root nodule formation
and thereby in nitrogen fixation.
Prevents Biocorrosion.
• Actinomycetes produce secondary metabolites, which act as AMSs (Antimicrobial substances). These
antimicrobial substances attack pathogenic and phytopathogenic microorganisms, which can cause
biocorrosion.
Use as Biopesticide
• Actinomycetes are also used as a biopesticide that attacks insects like Musca domestica, Culex
quinquefasciatus etc. It kills 90% of insects at their larval and pupal stage.