This document summarizes the history and contents of Bergey's Manual, a seminal reference work for the classification and identification of bacteria and archaea. It describes how the first edition in 1923 established a phenetic classification system, while modern editions are based on phylogenetic analysis of rRNA sequencing. The first edition of Bergey's Manual of Systematic Bacteriology in 1984 classified microbes into 33 sections based on common characteristics rather than phylogeny alone. Subsequent editions reorganized the classification to distribute pathogenic bacteria throughout volumes based on their phylogenetic positions.
Bergey's Manual and it's classification. A brief concised presentation prepared for taking seminar and classes.
Volume II (Edition 2) described more in detail.
Microbial interactions are ubiquitous, diverse, critically important in the function of any biological community.
The most common cooperative interactions seen in microbial systems are mutually beneficial. The interactions between the two populations are classified according to whether both populations and one of them benefit from the associations, or one or both populations are negatively affected.
Bergey's Manual and it's classification. A brief concised presentation prepared for taking seminar and classes.
Volume II (Edition 2) described more in detail.
Microbial interactions are ubiquitous, diverse, critically important in the function of any biological community.
The most common cooperative interactions seen in microbial systems are mutually beneficial. The interactions between the two populations are classified according to whether both populations and one of them benefit from the associations, or one or both populations are negatively affected.
This presentation contains information about Bacterial Taxonomy, techniques of bacterial classification (Classical and Molecular characteristics) and Bergey's Manual
Sergei Nikolaievich Winogradsky And Martinus Willem Beijerinck-Discoveries,Nitrogen Fixing Bacteria and the Discovery of Chemosynthesis, Scientific contributions
This presentation contains information about Bacterial Taxonomy, techniques of bacterial classification (Classical and Molecular characteristics) and Bergey's Manual
Sergei Nikolaievich Winogradsky And Martinus Willem Beijerinck-Discoveries,Nitrogen Fixing Bacteria and the Discovery of Chemosynthesis, Scientific contributions
differentiate between Bergeyso Manual of systematic bacteriology a.pdfarchanacomputers1
differentiate between Bergey\'so Manual of systematic bacteriology and Bergey\'s Manual of
Determinative Bacteriology.
Solution
ANS:
David Berger published a book (1923) on bacterial classification based on bacterial species. The
book is named as “THE BERGEY’S MANUAL OF DETERMINATIVE BACTERIOLOGY”.
This book is the \"BIBLE\" of bacterial taxonomy. In his first edition he classified bacteria on
basis of phenetics, but the second is based on phylogenetic studies.
Bergey\'s Manual of systematic bacteriology:
In this bacteria’s are classified on the basis of genetic relationship and its evolution.
It explains eu- and archaebacteria phylogenetic information based on r RNA sequencing.
Bergey\'s Manual of Determinative Bacteriology:
In this bacteria’s are classified on the based on cell wall composition, morphology, biochemical
tests and differential staining etc...
According to this eubacteria and archaebacteria is identified by different identification schemes..
Taxonomy of Prokaryotes that include Bacteria and Archea, Brief description of taxonomy
history
types of classification
numerical taxonomy
different classification system
basic characters used for classification
International code of Nomenclature of Bacteria
Bergey's manual
pathovar concept
Major divisions in Bergey's manual of systematic bacteriology 2nd edition presented for examination purpose. Pinned important points are compiled here for students.
Bacteriology studies of bacteria
# branch of microbiology
# study of bacteria
# application
# role of bacteriology
# bacteria
# Koch postulate
#History
# role of bacteriology
# branch of bacteriology
# Recombination bacteria
# pathogenetic bacteriology
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
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Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
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Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
2. • 1923, David Bergey and 4 collegues published a
classification of bacteria that could be used for
identification of bacterial species:
“THE BERGEY’S MANUAL OF
DETERMINATIVE BACTERIOLOGY.”
(9 editions)
• The first edition of Bergey’s Manual of Systemic
Bacteriology had its classification done on basis of
phenetics; but the now present editions are based on
phylogenetic studies.
3. Bergey’s Manual:
Classifying and Identifying Prokaryotes
Bergey’s Manual of
Determinative Bacteriology
Provides identification
schemes for identifying
bacteria and archaea
Morphology, differential
staining, biochemical
tests
Bergey’s Manual of
Systematic Bacteriology (1st
and 2nd edition)
Provides phylogenetic
information on bacteria and
archaea
Based on rRNA
sequencing
4. 1st edition of BSB
Published in 1984
• 4 volumes, classifies bacteria
into 33 sections based on
common characteristics, not
purely phylogenetic.
5. Characteristics used for classification
in edition 1
• General shape & morphology
• Gram staining properties
• Oxygen relationship
• Motility
• Presence of endospores
• Mode of energy production
7. • Includes medicinally important bacteria
• Thin peptidoglycan layer
• Outer membrane containing lipopolysaccharide
• periplasmic space
• Phototrophic, Chemolithotropic or
Chemoorganotropic
• No teichoic acids or lipoteichoic acids
• Contain Braun's lipoprotein and porins
Gram (-) Bacteria
8. Gram (+) Bacteria
• Thick peptidoglycan layer
• Teichoic acids present
• Chemoorganoheterotrophic
• Peptidoglycan molecules are cross-linked by
pentaglycine chains
• Primarily exotoxins are produced
• 2 rings in basal body of flagella
• Some can form endospores
9. Archaea
• They are extremophiles like methanotrophs ,
halophiles
• Cell wall is made of pseudomurein rather than
peptidoglycan.
• Ether bonds in membrane lipids
• obligate anaerobes
• Asexual reproduction by binary fission
10. Actinobacteria
• High G+C content
• Anaerobes or microaerophilic
• Produce filamentous hyphae
• Decomposition of organic materials so
important part of humus formation
• No production of endospore
• Secondary metabolite producers
• Representing Genera- Streptomyces, etc.
11. THE SECOND EDITION OF THE BERGEY’S MANUAL has
the following volumes where it doesn’t group all
the clinically important prokaryotes together as the
1st edition does, here the pathogenic bacteria are
placed phylogenetically, and so are distributed
throughtout in all the volumes:
12. Edition 2 of Bergey’s Manual
1.Archaea and the Deeply Branching Phototropic Bacteria. (2001)
2.Proteobacteria (2005)
3.Low G+C Gram(+) bacteria (2009), Phylum Firmicutes
4.High G+C Gram(+) bacteria (2011), Phylum Actinobacteria
5.Spirochaetes, Fusobacteria, Planctomycetes,
Bacteroidetes, Chlamydiae, Acidobacteria, & Fibrobacters (2012), Ten phyla
Particularly based on phylogenetic analysis
13. Bergey's Manual of Determinative
Bacteriology
• Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer, B.W. & Huntoon, F.M. (eds., 1923). Bergey's
Manual of Determinative Bacteriology, 1st ed., The Williams & Wilkins Co, Baltimore, 442 p.
• Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer, B.W. & Huntoon, F.M. (eds., 1925). Bergey's
Manual of Determinative Bacteriology, 2nd ed., The Williams & Wilkins Co, Baltimore, 462 p.
• Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer, B.W. & Huntoon, F.M. (eds., 1930). Bergey's
Manual of Determinative Bacteriology, 3rd ed., The Williams and Wilkins Co., Baltimore, 589
p.
• Bergey, D.H., Breed, R.S., Hammer, B.W., Huntoon, F.M., Murray, E.G.D. & Harrison, F.C. (eds.,
1934). Bergey's Manual of Determinative Bacteriology, 4th ed., The Williams & Wilkins Co,
Baltimore.
• Bergey, D.H., Breed, R.S., Murray, E.G.D. & Hitchens, A.P. (eds., 1939). Bergey's Manual of
Determinative Bacteriology, 5th ed., The Williams and Wilkins Co., Baltimore.
• Breed, R.S., Murray, E.G.D. & Hitchens, A.P. (eds., 1948). Bergey's Manual of Determinative
Bacteriology, 6th ed., The Williams and Wilkins Co., Baltimore.
• Breed, R.S., Murray, E.G.D. & Smith, N.R. (eds., 1957). Bergey's Manual of Determinative
Bacteriology, 7th ed., The Williams and Wilkins Co., Baltimore.
• Buchanan, R.E. & Gibbons, N.R. (eds., 1974). Bergey's Manual of Determinative Bacteriology,
8th ed., Baltimore: Williams & Wilkins.
• Holt, J.G. & Krieg, N.R. (eds., 1994). Bergey's Manual of Determinative Bacteriology', 9th ed.,
The Williams & Wilkins Co., Baltimore.
14. • Bergey's Manual of Systematic Bacteriology, 1st ed.
• Krieg, N.R. & Holt, J.C. (eds., 1984). Bergey’s Manual of Systematic Bacteriology, 1st ed., vol.
1, Williams and Wilkins, Baltimore.
• Sneath, P.H.A., Mair, N.S., Sharpe, M.E. & Holt, J.G. (eds., 1986). Bergey’s Manual of
Systematic Bacteriology, 1st ed., vol. 2, Williams & Wilkins, Baltimore.
• Staley, J.T., Bryant, M.P., Pfennig, N. & Holt, J.G. (eds., 1989). Bergey’s Manual of Systematic
Bacteriology, 1st ed., vol. 3, Williams and Wilkins, Baltimore.
• Williams, S.T., Sharpe, M.E. & Holt, J.G. (eds., 1989). Bergey’s Manual of Systematic
Bacteriology, 1st ed., vol. 4, Williams and Wilkins, Baltimore.
• Bergey's Manual of Systematic Bacteriology, 2nd ed.
• Garrity, G.M., Boone, D.R. & Castenholz, R.W. (eds., 2001). Bergey’s Manual of Systematic
Bacteriology, 2nd ed., vol. 1, Springer-Verlag, New York, NY
• Brenner, D.J., Krieg, N.R., Staley, J.T. & Garrity, G.M. (eds., 2005). Bergey’s Manual of
Systematic Bacteriology, 2nd ed., vol. 2, parts A, B and C, Springer-Verlag, New York, NY.
• Vos, P., Garrity, G., Jones, D., Krieg, N.R., Ludwig, W., Rainey, F.A., Schleifer, K.-H. & Whitman,
W.B. (eds., 2009). Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 3, Springer-
Verlag, New York, NY.
• Krieg, N.R., Ludwig, W., Whitman, W.B., Hedlund, B.P., Paster, B.J., Staley, J.T., Ward, N. &
Brown, D. (eds., 2010). Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 4, Springer-
Verlag, New York, NY.
• Whitman, W.B., Goodfellow, M., Kämpfer, P., Busse, H.-J., Trujillo, M.E., Ludwig, W. & Suzuki,
K.-i. (eds., 2012). Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 5, parts A and B,
Springer-Verlag, New York, NY.
15.
16. Archaea
• Crenarchaeaota: most thermophilic archaea are found in this group. They use
sulfur compounds as electron donors or as acceptors. Not all are thermophilic.
• Euryarcheota: methanogens, halophiles, thermophiles.
17.
18. Proteobacteria
• Purple phototrophic Bacteria
• The nitrifying Bacteria
• Sulphur and iron oxidizing Bacteria
• Hydrogen oxidizing Bacteria
• Methanotrophs and methylotrophs
• Pseudomonas and the Pseudomonads
• Acetic acid Bacteria
• Free living aerobic nitrogen fixing Bacteria
• Neisseria and Chromobacterium
• Enteric Bacteria
• Vibrio and photobacterium
• Rickettsia
• Spirilla
• Sheathed proteobacteria
• Budding and prosthecate/stalked Bacteria
• Gliding Myxobacteria
• Sulphate and sulphur reducing proteobacteria