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Caveats and Comments
1
Overview:
This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is
available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh.
You are welcome to use the R code on GitHub for any purpose.
I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point
out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk.
I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist.
There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2.
Data sources:
• USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv
• USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv
• USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv
• Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv
• Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv
• Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv
• Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv
• Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ
• Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv
Models:
1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 =
𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50%
rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures).
Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction
interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/).
2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases.
Locations
The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g.,
China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add.
Stay safe, well, resilient, and kind.
Steve Shafer
steven.shafer@Stanford.edu
2,586,092
152,804
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Actual(points)/Predicted(line)
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-05-27
0
10,000
20,000
30,000
0
2,000
4,000
6,000
Cases/Day
Deaths/Day
Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5%
Explanation of the Figures
2
Brown dots:
cumulative tests
Red dots: cumulative cases
used to estimate Gompertz
function, presently set to last
3 weeks
Red line: predicted cumulative
cases based on the Gompertz
function estimated from the red
dots
Red number: total cases
on June 30th, based on
the Gompertz function
estimated from the red
dots
Black number: total
Deaths on July 31th,
based on log-linear
regression of the past
21 days
Black line: predicted
cumulative deaths, based
on a log linear regression
of deaths over past 21
days.
Axis for deaths / day, usually
1/10th of the axis for cases /
day on the left side of the
figure.
Green line: linear regression
over 8 days, used to calculate
percent increase / decrease
(see below)
Daily change in cases,
calculated as the slope of the
green line (above left) /
number of new cases
yesterday.
Case mortality:
cumulative deaths
/ cumulative cases.
Cases / day calculated
from cumulative cases
used to estimate the
Gompertz function
Cases / day calculated
from cumulative cases
not used to estimate the
Gompertz function
Deaths / day,
axis is on the left
Blue line: today
Blue dots: cumulative cases not
used to estimate Gompertz
function
Cumulative cases
(yesterday’s cases)
and cumulative deaths
(yesterday’s deaths)
Axis for cases / day.
Axis for deaths / day
appears to the right.
Geographic
location
Date of analysis,
also shown as
blue vertical line
below
Purple wedge: 98% ensemble
prediction interval from COVID-19
Forecast Hub (USA and US
States only)
Worldwide
43,344,092
1,212,737
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Worldwide projection as of 2020-10-10
1
10
100
1,000
10,000
100,000
1,000,000
CasesandDeaths/Day
Cases: 36,875,517 (360,685) -- Deaths: 1,068,024 (6,163) -- Case Mortality: 2.9% -- Daily Change: +1.5% Cases, +0.9% Deaths
2020-10-10 Summary: 3
USA
8,539,264
231,491
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-10-10
Mother'sDay
MemorialDay
July4th
July15,2020
LaborDay
1
10
100
1,000
10,000
100,000
CasesandDeaths/Day
Cases: 7,663,293 (57,420) -- Deaths: 213,752 (990) -- Case Mortality: 2.8% -- Daily Change: +2.1% Cases, +0.8% Deaths
2020-10-10 Summary: 4
Western Europe
4,071,319
169,829
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM)
Western Europe projection as of 2020-10-10
1
10
100
1,000
10,000
100,000
CasesandDeaths/Day
Cases: 3,108,224 (65,117) -- Deaths: 163,162 (499) -- Case Mortality: 5.2% -- Daily Change: +4.5% Cases, +2.6% Deaths
2020-10-10 Summary: 5
Comparison of COVID-19 Cases & Deaths
between US & Europe
Cases
Deaths
57,420
65,117
990
499
3
10
30
100
300
1,000
3,000
10,000
30,000
100,000
Date
DailyCasesandDeaths
Location
USA (318MM)
Western Europe (344MM)
Log plot of 7 day average
Comparison of COVID-19 Cases & Deaths between US & Europe
The numbers on the right are yesterday's figures, and will differ a bit from the plotted rolling mean
2020-10-10 Summary: 6
Non-authoritarian Asian ensemble
129,021
2,374
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Japan, South Korea, Thailand, and Vietnam (Population = 328 MM)
Non-authoritarian Asian ensemble projection as of 2020-10-10
1
10
100
1,000
10,000
CasesandDeaths/Day
Cases: 117,554 (671) -- Deaths: 2,147 (8) -- Case Mortality: 1.8% -- Daily Change: +0.9% Cases, -3.0% Deaths
2020-10-10 Summary: 7
Worldwide cases
USA
India
Brazil
Russia
Colombia
Argentina
Spain
Peru
Mexico
France
SouthAfrica
UnitedKingdom
Iran
Chile
Iraq
Bangladesh
Italy
SaudiArabia
Philippines
Turkey
Indonesia
Germany
Pakistan
Israel
Ukraine
Canada
Netherlands
Belgium
Romania
Morocco
Ecuador
Bolivia
DominicanRepublic
Poland
CzechRepublic
Kazakhstan
Egypt
Nepal
Sweden
Guatemala
China
Japan
Portugal
Ethiopia
Honduras
Belarus
Venezuela
Switzerland
Uzbekistan
Nigeria
Austria
Algeria
Kyrgyzstan
Paraguay
Ghana
Azerbaijan
Libya
Kenya
Afghanistan
Hungary
Serbia
Denmark
ElSalvador
Australia
Tunisia
USA
0
2,000,000
4,000,000
6,000,000
8,000,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-10-10 Summary: 8
Worldwide cases
Israel
Chile
Peru
Brazil
USA
Argentina
Spain
Colombia
Bolivia
SouthAfrica
Belgium
Iraq
DominicanRepublic
SaudiArabia
France
Sweden
CzechRepublic
Honduras
Ecuador
Netherlands
UnitedKingdom
Russia
Kyrgyzstan
Belarus
Switzerland
Portugal
Iran
Guatemala
Mexico
Kazakhstan
Paraguay
Romania
Libya
Austria
India
Italy
Denmark
Ukraine
Canada
Azerbaijan
Serbia
Turkey
Morocco
ElSalvador
Germany
Jordan
Hungary
Nepal
Philippines
Bulgaria
Slovakia
Venezuela
Poland
Tunisia
Bangladesh
Finland
Uzbekistan
Greece
Ghana
Pakistan
Algeria
Afghanistan
Tajikistan
Indonesia
Zambia
USA
None
1 in 100
1 in 50
1 in 33
1 in 25
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-10-10 Summary: 9
Average new cases over past 7 days
Israel
CzechRepublic
Argentina
Belgium
Netherlands
Spain
UnitedKingdom
France
Jordan
Colombia
USA
Slovakia
Brazil
Libya
Iraq
Paraguay
Austria
Romania
Switzerland
Ukraine
Tunisia
Peru
Hungary
Chile
Nepal
Portugal
Honduras
Russia
Poland
Morocco
Denmark
Mexico
Sweden
Canada
India
Ecuador
DominicanRepublic
Iran
Italy
Bulgaria
Belarus
Guatemala
Kyrgyzstan
Germany
Finland
Greece
Bolivia
SouthAfrica
Venezuela
Philippines
Myanmar
Turkey
Azerbaijan
Indonesia
Malaysia
SaudiArabia
Serbia
Uzbekistan
ElSalvador
Ethiopia
Angola
Bangladesh
SriLanka
Kenya
Zambia
USA
None
1 in 10,000
1 in 5,000
1 in 3,333
1 in 2,500
1 in 2,000
1 in 1,667
1 in 1,429
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagecases/day
Average new cases over past 7 days
Excludes countries with population < 5,000,000
2020-10-10 Summary: 10
Worldwide deaths
USA
Brazil
India
Mexico
UnitedKingdom
Italy
Peru
Spain
France
Iran
Colombia
Argentina
Russia
SouthAfrica
Chile
Ecuador
Indonesia
Belgium
Iraq
Canada
Germany
Turkey
Bolivia
Netherlands
Pakistan
Philippines
Egypt
Sweden
Bangladesh
Romania
SaudiArabia
Ukraine
China
Guatemala
Poland
Morocco
Honduras
DominicanRepublic
Switzerland
Portugal
Israel
Algeria
Kazakhstan
Japan
Afghanistan
Ethiopia
Nigeria
Kyrgyzstan
Paraguay
Hungary
CzechRepublic
Australia
Bulgaria
Belarus
ElSalvador
Austria
Sudan
Serbia
Kenya
Venezuela
Denmark
Libya
Azerbaijan
Nepal
Yemen
USA
0
50,000
100,000
150,000
200,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-10-10 Summary: 11
Worldwide deaths
Peru
Belgium
Bolivia
Ecuador
Spain
Chile
Brazil
Mexico
UnitedKingdom
USA
Sweden
Italy
Colombia
Argentina
France
Iran
Netherlands
SouthAfrica
Honduras
Iraq
Canada
Switzerland
Israel
Guatemala
Romania
DominicanRepublic
Kyrgyzstan
Portugal
SaudiArabia
Russia
Paraguay
Bulgaria
ElSalvador
Denmark
Germany
Turkey
Kazakhstan
Ukraine
Serbia
Austria
Libya
Hungary
India
Belarus
CzechRepublic
Poland
Azerbaijan
Morocco
Egypt
Finland
Philippines
Algeria
Afghanistan
Indonesia
Australia
Greece
Tunisia
Pakistan
Bangladesh
Sudan
Zambia
Jordan
Nicaragua
Venezuela
Haiti
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 in 833
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-10-10 Summary: 12
Average daily deaths over past 7 days
Argentina
Ecuador
Mexico
Israel
Colombia
Bolivia
Iran
Paraguay
Brazil
Chile
Spain
CzechRepublic
Peru
Romania
USA
Iraq
Jordan
Honduras
SouthAfrica
Tunisia
Ukraine
Hungary
Belgium
Libya
Poland
Russia
France
Morocco
Bulgaria
Canada
Portugal
UnitedKingdom
Netherlands
Guatemala
SaudiArabia
India
Philippines
Turkey
DominicanRepublic
Myanmar
Austria
Belarus
ElSalvador
Greece
Indonesia
Italy
Nepal
Denmark
Kyrgyzstan
Angola
Switzerland
Venezuela
Slovakia
Serbia
Azerbaijan
Algeria
Kazakhstan
Bangladesh
Kenya
Germany
Egypt
Uzbekistan
Syria
Ethiopia
Malaysia
USA
None
1 in 500,000
1 in 250,000
1 in 166,667
1 in 125,000
1 in 100,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagedeaths/day
Average daily deaths over past 7 days
Excludes countries with population < 5,000,000
2020-10-10 Summary: 13
Mortality Trends
0
2
4
6
8
10
12
14
USCaseRateMortality
Mortality Type:
13 day rolling median
Cumulative
Daily Raw
Daily vs. Cumulative US Case Rate Mortality
Last week excluded because deaths are often backdated
2020-10-10 Summary: 14
Change in New Cases per Day
Daily cases are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
Daily cases by state as of 2020-10-10
2020-10-10 Summary: 15
Cases as a Percent of Peak Cases
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Cases as a Percent of Peak Cases
2020-10-10 Summary: 16
Change in Deaths per Day
Daily deaths are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
Daily deaths by state as of 2020-10-10
2020-10-10 Summary: 17
Deaths as a Percent of Peak Deaths
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Deaths as a Percent of Peak Deaths
2020-10-10 Summary: 18
Change in cases vs. change in deaths over
last 14 days
AL
AK AZ
AR
CA
COCT
DE
DC
FL
GA
HI
ID
IL IN
IA
KS
KYLA
ME
MDMA
MI
MN
MS
MO
MT
NE
NV
NH
NJ NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
-6
-3
0
3
6
-6 -3 0 3 6
Change in cases (%/day)
Changeindeaths(%/day)
Change in cases vs. change in deaths over last 14 days as of 2020-10-10
Size is proportional total cases per capita
2020-10-10 Summary: 19
Total US COVID-19 Cases
California
Texas
Florida
NewYork
Georgia
Illinois
NorthCarolina
Arizona
NewJersey
Tennessee
Pennsylvania
Louisiana
Ohio
Alabama
Virginia
SouthCarolina
Michigan
Wisconsin
Missouri
Massachusetts
Indiana
Maryland
Minnesota
Mississippi
Iowa
Oklahoma
Washington
Arkansas
Nevada
Utah
Kentucky
Colorado
Kansas
Connecticut
Nebraska
Idaho
Oregon
NewMexico
SouthDakota
RhodeIsland
NorthDakota
Delaware
WestVirginia
Montana
DistrictofColumbia
Hawaii
Alaska
NewHampshire
Wyoming
Maine
Vermont
0
250,000
500,000
750,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Totalcases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.64, p governor: 0.99. NB: association != causation.
2020-10-10 Summary: 20
Total US COVID-19 Cases
Louisiana
Mississippi
NorthDakota
Florida
Alabama
Iowa
Georgia
Tennessee
Arizona
SouthDakota
Arkansas
SouthCarolina
Texas
Nevada
Idaho
Utah
Nebraska
Illinois
Wisconsin
RhodeIsland
Oklahoma
NewYork
NewJersey
Missouri
DistrictofColumbia
Delaware
Kansas
NorthCarolina
Maryland
California
Massachusetts
Indiana
Minnesota
Virginia
Kentucky
Connecticut
Montana
NewMexico
Michigan
Ohio
Pennsylvania
Colorado
Wyoming
Alaska
Washington
WestVirginia
Hawaii
Oregon
NewHampshire
Maine
Vermont
None
1 in 100
1 in 50
1 in 33
1 in 25
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalCases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.032, p governor: 0.015. NB: association != causation.
2020-10-10 Summary: 21
Average US COVID-19 cases over the past
7 days
NorthDakota
SouthDakota
Montana
Wisconsin
Utah
Idaho
Iowa
Missouri
Oklahoma
Wyoming
Arkansas
Nebraska
Tennessee
Kentucky
Kansas
Alaska
Minnesota
Mississippi
Alabama
Indiana
Illinois
SouthCarolina
NorthCarolina
Nevada
RhodeIsland
NewMexico
Texas
Delaware
WestVirginia
Colorado
Louisiana
Ohio
Florida
Virginia
Georgia
Michigan
Maryland
Pennsylvania
Massachusetts
NewJersey
DistrictofColumbia
California
Arizona
Connecticut
Oregon
NewYork
Washington
Hawaii
NewHampshire
Maine
Vermont
None
1 in 10,000
1 in 5,000
1 in 3,333
1 in 2,500
1 in 2,000
1 in 1,667
1 in 1,429
1 6 11 16 21 26 31 36 41 46 51
Rank
NewCases/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 cases over the past 7 days
p masks as of July 20, 2020: 0.0018, p governor: 0.021. NB: association != causation.
2020-10-10 Summary: 22
Total US COVID-19 Deaths
NewYork
Texas
California
NewJersey
Florida
Massachusetts
Illinois
Pennsylvania
Georgia
Michigan
Arizona
Louisiana
Ohio
Connecticut
Maryland
Indiana
NorthCarolina
SouthCarolina
Virginia
Mississippi
Tennessee
Alabama
Missouri
Washington
Minnesota
Colorado
Nevada
Arkansas
Iowa
Wisconsin
Kentucky
RhodeIsland
Oklahoma
NewMexico
Kansas
Delaware
DistrictofColumbia
Oregon
Nebraska
Idaho
Utah
NewHampshire
WestVirginia
NorthDakota
SouthDakota
Montana
Hawaii
Maine
Alaska
Vermont
Wyoming
0
10,000
20,000
30,000
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.082, p governor: 0.47. NB: association != causation.
2020-10-10 Summary: 23
Total US COVID-19 Deaths
NewJersey
NewYork
Massachusetts
Connecticut
Louisiana
RhodeIsland
Mississippi
DistrictofColumbia
Arizona
Illinois
Michigan
Florida
Georgia
SouthCarolina
Delaware
Maryland
Pennsylvania
Texas
Indiana
Alabama
Nevada
Arkansas
Iowa
NewMexico
Ohio
NorthDakota
California
Tennessee
Virginia
Missouri
Minnesota
Colorado
NorthCarolina
NewHampshire
SouthDakota
Washington
Idaho
Kentucky
Oklahoma
Nebraska
Kansas
Wisconsin
WestVirginia
Montana
Utah
Oregon
Hawaii
Maine
Wyoming
Vermont
Alaska
None
1 in 2,000
1 in 1,000
1 in 667
1 in 500
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.066, p governor: 0.56. NB: association != causation.
2020-10-10 Summary: 24
Average US COVID-19 deaths over the past
7 days
NorthDakota
Missouri
Arkansas
SouthDakota
Florida
Kansas
Mississippi
Tennessee
Iowa
Georgia
Texas
SouthCarolina
Louisiana
Montana
Alabama
Illinois
Hawaii
Idaho
Nevada
Indiana
NorthCarolina
Wisconsin
Delaware
Ohio
Utah
Oklahoma
Massachusetts
Virginia
California
WestVirginia
Minnesota
RhodeIsland
Pennsylvania
Kentucky
Nebraska
Arizona
Michigan
NewMexico
Oregon
Colorado
DistrictofColumbia
Washington
Maryland
NewYork
NewHampshire
Connecticut
Alaska
NewJersey
Wyoming
Maine
Vermont
None
1 in 500,000
1 in 250,000
1 in 166,667
1 in 125,000
1 in 100,000
1 in 83,333
1 6 11 16 21 26 31 36 41 46 51
Rank
Deaths/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 deaths over the past 7 days
p masks as of July 20, 2020: 0.036, p governor: 0.033. NB: association != causation.
2020-10-10 Summary: 25
Daily testing trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Dailytestingfrommintomax
Daily testing trends from min to max
Line = Friedman's supersmoother
2020-10-10 Summary: 26
Change in daily tests over past 14 days
Mississippi
Wyoming
SouthDakota
RhodeIsland
Kansas
DistrictofColumbia
Delaware
Montana
NewYork
NewJersey
Washington
Connecticut
Wisconsin
Missouri
Oklahoma
Arizona
Michigan
Maine
Florida
Iowa
Virginia
Indiana
Oregon
Pennsylvania
Georgia
Utah
NorthDakota
Alaska
Nebraska
Illinois
Louisiana
Tennessee
Alabama
NorthCarolina
SouthCarolina
Vermont
NewMexico
Idaho
Maryland
WestVirginia
Massachusetts
Nevada
Ohio
Minnesota
Colorado
California
Kentucky
Texas
Arkansas
Hawaii
NewHampshire
-5.0
0.0
5.0
10.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeindailytests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in daily tests over past 14 days
p masks as of July 20, 2020: 0.18, p governor: 0.3. NB: association != causation.
2020-10-10 Summary: 27
Percent Tested
Alaska
NewYork
DistrictofColumbia
Louisiana
Connecticut
Illinois
NewMexico
Tennessee
NewJersey
California
Michigan
Arkansas
Maine
Montana
RhodeIsland
Massachusetts
WestVirginia
Kentucky
Oklahoma
NorthDakota
NorthCarolina
Delaware
Ohio
Georgia
Wisconsin
Maryland
SouthCarolina
Utah
Minnesota
Vermont
Mississippi
Washington
Virginia
Florida
Iowa
Nebraska
Alabama
SouthDakota
Nevada
Texas
Missouri
Hawaii
Indiana
Arizona
NewHampshire
Kansas
Wyoming
Idaho
Oregon
Colorado
Pennsylvania
0
20
40
60
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentTested
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent Tested
p masks as of July 20, 2020: 0.021, p governor: 0.078. NB: association != causation.
2020-10-10 Summary: 28
Percent of Positive COVID Tests
NorthDakota
Idaho
SouthDakota
Iowa
Wisconsin
Missouri
Nevada
Utah
Indiana
Wyoming
Kansas
Alabama
Nebraska
Florida
Montana
Arkansas
Oklahoma
Minnesota
Hawaii
Pennsylvania
Texas
Colorado
Oregon
Kentucky
Mississippi
Arizona
Delaware
Tennessee
Georgia
Maryland
NorthCarolina
RhodeIsland
NewHampshire
SouthCarolina
Virginia
NewMexico
Alaska
Illinois
Massachusetts
Louisiana
Ohio
WestVirginia
Michigan
Washington
California
NewJersey
DistrictofColumbia
Vermont
NewYork
Connecticut
Maine
0
10
20
30
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentofPositiveTests
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent of Positive COVID Tests
p masks as of July 20, 2020: 0.0011, p governor: 0.015. NB: association != causation.
2020-10-10 Summary: 29
Percent Positive Trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
PercentPositive(logscale)
Percent Positive Trends
2020-10-10 Summary: 30
Change in tests vs. change in positive tests
over last 14 days
AL
AK
AZ
AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
IL IN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
-10
-5
0
5
10
-6 -3 0 3 6
Change in tests (%/day)
Changeinpositivetests(%/day)
Change in tests vs. change in positive tests over last 14 days as of 2020-10-10
Size is proportional daily deaths per capita over the past 7 days
2020-10-10 Summary: 31
Current hospitalizations as a percent of peak
since FebruaryArkansas
Iowa
Kansas
Montana
Nebraska
Oklahoma
Missouri
Wisconsin
Wyoming
Kentucky
NorthDakota
SouthDakota
WestVirginia
Alaska
Utah
NorthCarolina
Tennessee
Idaho
Minnesota
Indiana
Ohio
Oregon
Virginia
Georgia
NewMexico
Alabama
Mississippi
SouthCarolina
Nevada
Washington
Hawaii
California
Illinois
Texas
Colorado
RhodeIsland
Delaware
Louisiana
Pennsylvania
Maryland
Florida
DistrictofColumbia
Michigan
Arizona
Massachusetts
Maine
NewHampshire
NewJersey
Connecticut
NewYork
Vermont
0
30
60
90
1 6 11 16 21 26 31 36 41 46 51
Rank
Hospitalizations(%ofpeak)
Masks
No
Yes
Governor
aa
Democratic
Republican
Current hospitalizations as a percent of peak since February
p masks as of July 20, 2020: 0.0064, p governor: 0.066. NB: association != causation.
2020-10-10 Summary: 32
Hospitalizations trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Hospitalizationsfrommintomax
Hospitalizations trends from min to max
2020-10-10 Summary: 33
Change in hospitalizations over past 14
days
Wyoming
NorthDakota
Connecticut
Montana
Delaware
NewMexico
Wisconsin
Pennsylvania
NewJersey
Michigan
Colorado
NewYork
Arizona
Tennessee
Idaho
SouthDakota
Nebraska
Utah
Ohio
Kansas
Minnesota
Iowa
Kentucky
Massachusetts
Oklahoma
Indiana
Maryland
Missouri
Arkansas
NorthCarolina
Illinois
RhodeIsland
Nevada
Texas
Alaska
Alabama
Virginia
DistrictofColumbia
Oregon
NewHampshire
Florida
Mississippi
Louisiana
California
WestVirginia
SouthCarolina
Washington
Georgia
Maine
Hawaii
Vermont
-10.0
-5.0
0.0
5.0
10.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinhospitalizations(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in hospitalizations over past 14 days
p masks as of July 20, 2020: 0.63, p governor: 0.48. NB: association != causation.
2020-10-10 Summary: 34
Change in New Cases per Day
Direction
Increasing > +2%
Increasing between +0.5% and +2%
No Change (-0.5% to +0.5%)
Decreasing between -0.5% and -2%
Decreasing > -2%
NA
Trends by county as of 2020-10-10
NA = Inadequate data
2020-10-10 Summary: 35

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COVID-19 Update (Summary): October 10, 2020

  • 1. Caveats and Comments 1 Overview: This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh. You are welcome to use the R code on GitHub for any purpose. I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk. I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist. There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2. Data sources: • USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv • USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv • USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv • Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv • Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv • Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv • Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv • Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ • Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv Models: 1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 = 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50% rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures). Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/). 2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases. Locations The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g., China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add. Stay safe, well, resilient, and kind. Steve Shafer steven.shafer@Stanford.edu
  • 2. 2,586,092 152,804 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Actual(points)/Predicted(line) Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-05-27 0 10,000 20,000 30,000 0 2,000 4,000 6,000 Cases/Day Deaths/Day Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5% Explanation of the Figures 2 Brown dots: cumulative tests Red dots: cumulative cases used to estimate Gompertz function, presently set to last 3 weeks Red line: predicted cumulative cases based on the Gompertz function estimated from the red dots Red number: total cases on June 30th, based on the Gompertz function estimated from the red dots Black number: total Deaths on July 31th, based on log-linear regression of the past 21 days Black line: predicted cumulative deaths, based on a log linear regression of deaths over past 21 days. Axis for deaths / day, usually 1/10th of the axis for cases / day on the left side of the figure. Green line: linear regression over 8 days, used to calculate percent increase / decrease (see below) Daily change in cases, calculated as the slope of the green line (above left) / number of new cases yesterday. Case mortality: cumulative deaths / cumulative cases. Cases / day calculated from cumulative cases used to estimate the Gompertz function Cases / day calculated from cumulative cases not used to estimate the Gompertz function Deaths / day, axis is on the left Blue line: today Blue dots: cumulative cases not used to estimate Gompertz function Cumulative cases (yesterday’s cases) and cumulative deaths (yesterday’s deaths) Axis for cases / day. Axis for deaths / day appears to the right. Geographic location Date of analysis, also shown as blue vertical line below Purple wedge: 98% ensemble prediction interval from COVID-19 Forecast Hub (USA and US States only)
  • 3. Worldwide 43,344,092 1,212,737 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Worldwide projection as of 2020-10-10 1 10 100 1,000 10,000 100,000 1,000,000 CasesandDeaths/Day Cases: 36,875,517 (360,685) -- Deaths: 1,068,024 (6,163) -- Case Mortality: 2.9% -- Daily Change: +1.5% Cases, +0.9% Deaths 2020-10-10 Summary: 3
  • 4. USA 8,539,264 231,491 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-10-10 Mother'sDay MemorialDay July4th July15,2020 LaborDay 1 10 100 1,000 10,000 100,000 CasesandDeaths/Day Cases: 7,663,293 (57,420) -- Deaths: 213,752 (990) -- Case Mortality: 2.8% -- Daily Change: +2.1% Cases, +0.8% Deaths 2020-10-10 Summary: 4
  • 5. Western Europe 4,071,319 169,829 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM) Western Europe projection as of 2020-10-10 1 10 100 1,000 10,000 100,000 CasesandDeaths/Day Cases: 3,108,224 (65,117) -- Deaths: 163,162 (499) -- Case Mortality: 5.2% -- Daily Change: +4.5% Cases, +2.6% Deaths 2020-10-10 Summary: 5
  • 6. Comparison of COVID-19 Cases & Deaths between US & Europe Cases Deaths 57,420 65,117 990 499 3 10 30 100 300 1,000 3,000 10,000 30,000 100,000 Date DailyCasesandDeaths Location USA (318MM) Western Europe (344MM) Log plot of 7 day average Comparison of COVID-19 Cases & Deaths between US & Europe The numbers on the right are yesterday's figures, and will differ a bit from the plotted rolling mean 2020-10-10 Summary: 6
  • 7. Non-authoritarian Asian ensemble 129,021 2,374 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Japan, South Korea, Thailand, and Vietnam (Population = 328 MM) Non-authoritarian Asian ensemble projection as of 2020-10-10 1 10 100 1,000 10,000 CasesandDeaths/Day Cases: 117,554 (671) -- Deaths: 2,147 (8) -- Case Mortality: 1.8% -- Daily Change: +0.9% Cases, -3.0% Deaths 2020-10-10 Summary: 7
  • 10. Average new cases over past 7 days Israel CzechRepublic Argentina Belgium Netherlands Spain UnitedKingdom France Jordan Colombia USA Slovakia Brazil Libya Iraq Paraguay Austria Romania Switzerland Ukraine Tunisia Peru Hungary Chile Nepal Portugal Honduras Russia Poland Morocco Denmark Mexico Sweden Canada India Ecuador DominicanRepublic Iran Italy Bulgaria Belarus Guatemala Kyrgyzstan Germany Finland Greece Bolivia SouthAfrica Venezuela Philippines Myanmar Turkey Azerbaijan Indonesia Malaysia SaudiArabia Serbia Uzbekistan ElSalvador Ethiopia Angola Bangladesh SriLanka Kenya Zambia USA None 1 in 10,000 1 in 5,000 1 in 3,333 1 in 2,500 1 in 2,000 1 in 1,667 1 in 1,429 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagecases/day Average new cases over past 7 days Excludes countries with population < 5,000,000 2020-10-10 Summary: 10
  • 12. Worldwide deaths Peru Belgium Bolivia Ecuador Spain Chile Brazil Mexico UnitedKingdom USA Sweden Italy Colombia Argentina France Iran Netherlands SouthAfrica Honduras Iraq Canada Switzerland Israel Guatemala Romania DominicanRepublic Kyrgyzstan Portugal SaudiArabia Russia Paraguay Bulgaria ElSalvador Denmark Germany Turkey Kazakhstan Ukraine Serbia Austria Libya Hungary India Belarus CzechRepublic Poland Azerbaijan Morocco Egypt Finland Philippines Algeria Afghanistan Indonesia Australia Greece Tunisia Pakistan Bangladesh Sudan Zambia Jordan Nicaragua Venezuela Haiti USA None 1 in 5,000 1 in 2,500 1 in 1,667 1 in 1,250 1 in 1,000 1 in 833 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Totaldeathstodate Worldwide deaths Excludes countries with population < 5,000,000 2020-10-10 Summary: 12
  • 13. Average daily deaths over past 7 days Argentina Ecuador Mexico Israel Colombia Bolivia Iran Paraguay Brazil Chile Spain CzechRepublic Peru Romania USA Iraq Jordan Honduras SouthAfrica Tunisia Ukraine Hungary Belgium Libya Poland Russia France Morocco Bulgaria Canada Portugal UnitedKingdom Netherlands Guatemala SaudiArabia India Philippines Turkey DominicanRepublic Myanmar Austria Belarus ElSalvador Greece Indonesia Italy Nepal Denmark Kyrgyzstan Angola Switzerland Venezuela Slovakia Serbia Azerbaijan Algeria Kazakhstan Bangladesh Kenya Germany Egypt Uzbekistan Syria Ethiopia Malaysia USA None 1 in 500,000 1 in 250,000 1 in 166,667 1 in 125,000 1 in 100,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagedeaths/day Average daily deaths over past 7 days Excludes countries with population < 5,000,000 2020-10-10 Summary: 13
  • 14. Mortality Trends 0 2 4 6 8 10 12 14 USCaseRateMortality Mortality Type: 13 day rolling median Cumulative Daily Raw Daily vs. Cumulative US Case Rate Mortality Last week excluded because deaths are often backdated 2020-10-10 Summary: 14
  • 15. Change in New Cases per Day Daily cases are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% Daily cases by state as of 2020-10-10 2020-10-10 Summary: 15
  • 16. Cases as a Percent of Peak Cases HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Cases as a Percent of Peak Cases 2020-10-10 Summary: 16
  • 17. Change in Deaths per Day Daily deaths are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% Daily deaths by state as of 2020-10-10 2020-10-10 Summary: 17
  • 18. Deaths as a Percent of Peak Deaths HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Deaths as a Percent of Peak Deaths 2020-10-10 Summary: 18
  • 19. Change in cases vs. change in deaths over last 14 days AL AK AZ AR CA COCT DE DC FL GA HI ID IL IN IA KS KYLA ME MDMA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY -6 -3 0 3 6 -6 -3 0 3 6 Change in cases (%/day) Changeindeaths(%/day) Change in cases vs. change in deaths over last 14 days as of 2020-10-10 Size is proportional total cases per capita 2020-10-10 Summary: 19
  • 20. Total US COVID-19 Cases California Texas Florida NewYork Georgia Illinois NorthCarolina Arizona NewJersey Tennessee Pennsylvania Louisiana Ohio Alabama Virginia SouthCarolina Michigan Wisconsin Missouri Massachusetts Indiana Maryland Minnesota Mississippi Iowa Oklahoma Washington Arkansas Nevada Utah Kentucky Colorado Kansas Connecticut Nebraska Idaho Oregon NewMexico SouthDakota RhodeIsland NorthDakota Delaware WestVirginia Montana DistrictofColumbia Hawaii Alaska NewHampshire Wyoming Maine Vermont 0 250,000 500,000 750,000 1 6 11 16 21 26 31 36 41 46 51 Rank Totalcases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.64, p governor: 0.99. NB: association != causation. 2020-10-10 Summary: 20
  • 21. Total US COVID-19 Cases Louisiana Mississippi NorthDakota Florida Alabama Iowa Georgia Tennessee Arizona SouthDakota Arkansas SouthCarolina Texas Nevada Idaho Utah Nebraska Illinois Wisconsin RhodeIsland Oklahoma NewYork NewJersey Missouri DistrictofColumbia Delaware Kansas NorthCarolina Maryland California Massachusetts Indiana Minnesota Virginia Kentucky Connecticut Montana NewMexico Michigan Ohio Pennsylvania Colorado Wyoming Alaska Washington WestVirginia Hawaii Oregon NewHampshire Maine Vermont None 1 in 100 1 in 50 1 in 33 1 in 25 1 6 11 16 21 26 31 36 41 46 51 Rank TotalCases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.032, p governor: 0.015. NB: association != causation. 2020-10-10 Summary: 21
  • 22. Average US COVID-19 cases over the past 7 days NorthDakota SouthDakota Montana Wisconsin Utah Idaho Iowa Missouri Oklahoma Wyoming Arkansas Nebraska Tennessee Kentucky Kansas Alaska Minnesota Mississippi Alabama Indiana Illinois SouthCarolina NorthCarolina Nevada RhodeIsland NewMexico Texas Delaware WestVirginia Colorado Louisiana Ohio Florida Virginia Georgia Michigan Maryland Pennsylvania Massachusetts NewJersey DistrictofColumbia California Arizona Connecticut Oregon NewYork Washington Hawaii NewHampshire Maine Vermont None 1 in 10,000 1 in 5,000 1 in 3,333 1 in 2,500 1 in 2,000 1 in 1,667 1 in 1,429 1 6 11 16 21 26 31 36 41 46 51 Rank NewCases/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 cases over the past 7 days p masks as of July 20, 2020: 0.0018, p governor: 0.021. NB: association != causation. 2020-10-10 Summary: 22
  • 23. Total US COVID-19 Deaths NewYork Texas California NewJersey Florida Massachusetts Illinois Pennsylvania Georgia Michigan Arizona Louisiana Ohio Connecticut Maryland Indiana NorthCarolina SouthCarolina Virginia Mississippi Tennessee Alabama Missouri Washington Minnesota Colorado Nevada Arkansas Iowa Wisconsin Kentucky RhodeIsland Oklahoma NewMexico Kansas Delaware DistrictofColumbia Oregon Nebraska Idaho Utah NewHampshire WestVirginia NorthDakota SouthDakota Montana Hawaii Maine Alaska Vermont Wyoming 0 10,000 20,000 30,000 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.082, p governor: 0.47. NB: association != causation. 2020-10-10 Summary: 23
  • 24. Total US COVID-19 Deaths NewJersey NewYork Massachusetts Connecticut Louisiana RhodeIsland Mississippi DistrictofColumbia Arizona Illinois Michigan Florida Georgia SouthCarolina Delaware Maryland Pennsylvania Texas Indiana Alabama Nevada Arkansas Iowa NewMexico Ohio NorthDakota California Tennessee Virginia Missouri Minnesota Colorado NorthCarolina NewHampshire SouthDakota Washington Idaho Kentucky Oklahoma Nebraska Kansas Wisconsin WestVirginia Montana Utah Oregon Hawaii Maine Wyoming Vermont Alaska None 1 in 2,000 1 in 1,000 1 in 667 1 in 500 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.066, p governor: 0.56. NB: association != causation. 2020-10-10 Summary: 24
  • 25. Average US COVID-19 deaths over the past 7 days NorthDakota Missouri Arkansas SouthDakota Florida Kansas Mississippi Tennessee Iowa Georgia Texas SouthCarolina Louisiana Montana Alabama Illinois Hawaii Idaho Nevada Indiana NorthCarolina Wisconsin Delaware Ohio Utah Oklahoma Massachusetts Virginia California WestVirginia Minnesota RhodeIsland Pennsylvania Kentucky Nebraska Arizona Michigan NewMexico Oregon Colorado DistrictofColumbia Washington Maryland NewYork NewHampshire Connecticut Alaska NewJersey Wyoming Maine Vermont None 1 in 500,000 1 in 250,000 1 in 166,667 1 in 125,000 1 in 100,000 1 in 83,333 1 6 11 16 21 26 31 36 41 46 51 Rank Deaths/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 deaths over the past 7 days p masks as of July 20, 2020: 0.036, p governor: 0.033. NB: association != causation. 2020-10-10 Summary: 25
  • 26. Daily testing trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Dailytestingfrommintomax Daily testing trends from min to max Line = Friedman's supersmoother 2020-10-10 Summary: 26
  • 27. Change in daily tests over past 14 days Mississippi Wyoming SouthDakota RhodeIsland Kansas DistrictofColumbia Delaware Montana NewYork NewJersey Washington Connecticut Wisconsin Missouri Oklahoma Arizona Michigan Maine Florida Iowa Virginia Indiana Oregon Pennsylvania Georgia Utah NorthDakota Alaska Nebraska Illinois Louisiana Tennessee Alabama NorthCarolina SouthCarolina Vermont NewMexico Idaho Maryland WestVirginia Massachusetts Nevada Ohio Minnesota Colorado California Kentucky Texas Arkansas Hawaii NewHampshire -5.0 0.0 5.0 10.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeindailytests(%/day) Masks No Yes Governor aa Democratic Republican Change in daily tests over past 14 days p masks as of July 20, 2020: 0.18, p governor: 0.3. NB: association != causation. 2020-10-10 Summary: 27
  • 29. Percent of Positive COVID Tests NorthDakota Idaho SouthDakota Iowa Wisconsin Missouri Nevada Utah Indiana Wyoming Kansas Alabama Nebraska Florida Montana Arkansas Oklahoma Minnesota Hawaii Pennsylvania Texas Colorado Oregon Kentucky Mississippi Arizona Delaware Tennessee Georgia Maryland NorthCarolina RhodeIsland NewHampshire SouthCarolina Virginia NewMexico Alaska Illinois Massachusetts Louisiana Ohio WestVirginia Michigan Washington California NewJersey DistrictofColumbia Vermont NewYork Connecticut Maine 0 10 20 30 1 6 11 16 21 26 31 36 41 46 51 Rank PercentofPositiveTests Masks No Yes Governor aa Democratic Republican Percent of Positive COVID Tests p masks as of July 20, 2020: 0.0011, p governor: 0.015. NB: association != causation. 2020-10-10 Summary: 29
  • 30. Percent Positive Trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 PercentPositive(logscale) Percent Positive Trends 2020-10-10 Summary: 30
  • 31. Change in tests vs. change in positive tests over last 14 days AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY -10 -5 0 5 10 -6 -3 0 3 6 Change in tests (%/day) Changeinpositivetests(%/day) Change in tests vs. change in positive tests over last 14 days as of 2020-10-10 Size is proportional daily deaths per capita over the past 7 days 2020-10-10 Summary: 31
  • 32. Current hospitalizations as a percent of peak since FebruaryArkansas Iowa Kansas Montana Nebraska Oklahoma Missouri Wisconsin Wyoming Kentucky NorthDakota SouthDakota WestVirginia Alaska Utah NorthCarolina Tennessee Idaho Minnesota Indiana Ohio Oregon Virginia Georgia NewMexico Alabama Mississippi SouthCarolina Nevada Washington Hawaii California Illinois Texas Colorado RhodeIsland Delaware Louisiana Pennsylvania Maryland Florida DistrictofColumbia Michigan Arizona Massachusetts Maine NewHampshire NewJersey Connecticut NewYork Vermont 0 30 60 90 1 6 11 16 21 26 31 36 41 46 51 Rank Hospitalizations(%ofpeak) Masks No Yes Governor aa Democratic Republican Current hospitalizations as a percent of peak since February p masks as of July 20, 2020: 0.0064, p governor: 0.066. NB: association != causation. 2020-10-10 Summary: 32
  • 33. Hospitalizations trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Hospitalizationsfrommintomax Hospitalizations trends from min to max 2020-10-10 Summary: 33
  • 34. Change in hospitalizations over past 14 days Wyoming NorthDakota Connecticut Montana Delaware NewMexico Wisconsin Pennsylvania NewJersey Michigan Colorado NewYork Arizona Tennessee Idaho SouthDakota Nebraska Utah Ohio Kansas Minnesota Iowa Kentucky Massachusetts Oklahoma Indiana Maryland Missouri Arkansas NorthCarolina Illinois RhodeIsland Nevada Texas Alaska Alabama Virginia DistrictofColumbia Oregon NewHampshire Florida Mississippi Louisiana California WestVirginia SouthCarolina Washington Georgia Maine Hawaii Vermont -10.0 -5.0 0.0 5.0 10.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinhospitalizations(%/day) Masks No Yes Governor aa Democratic Republican Change in hospitalizations over past 14 days p masks as of July 20, 2020: 0.63, p governor: 0.48. NB: association != causation. 2020-10-10 Summary: 34
  • 35. Change in New Cases per Day Direction Increasing > +2% Increasing between +0.5% and +2% No Change (-0.5% to +0.5%) Decreasing between -0.5% and -2% Decreasing > -2% NA Trends by county as of 2020-10-10 NA = Inadequate data 2020-10-10 Summary: 35