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Caveats and Comments
1
Overview:
This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is
available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh.
You are welcome to use the R code on GitHub for any purpose.
I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point
out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk.
I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist.
There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2.
Data sources:
• USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv
• USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv
• USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv
• Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv
• Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv
• Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv
• Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv
• Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ
• Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv
Models:
1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 =
𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50%
rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures).
Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction
interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/).
2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases.
Locations
The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g.,
China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add.
Stay safe, well, resilient, and kind.
Steve Shafer
steven.shafer@Stanford.edu
2,586,092
152,804
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Actual(points)/Predicted(line)
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-05-27
0
10,000
20,000
30,000
0
2,000
4,000
6,000
Cases/Day
Deaths/Day
Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5%
Explanation of the Figures
2
Brown dots:
cumulative tests
Red dots: cumulative cases
used to estimate Gompertz
function, presently set to last
3 weeks
Red line: predicted cumulative
cases based on the Gompertz
function estimated from the red
dots
Red number: total cases
on June 30th, based on
the Gompertz function
estimated from the red
dots
Black number: total
Deaths on July 31th,
based on log-linear
regression of the past
21 days
Black line: predicted
cumulative deaths, based
on a log linear regression
of deaths over past 21
days.
Axis for deaths / day, usually
1/10th of the axis for cases /
day on the left side of the
figure.
Green line: linear regression
over 8 days, used to calculate
percent increase / decrease
(see below)
Daily change in cases,
calculated as the slope of the
green line (above left) /
number of new cases
yesterday.
Case mortality:
cumulative deaths
/ cumulative cases.
Cases / day calculated
from cumulative cases
used to estimate the
Gompertz function
Cases / day calculated
from cumulative cases
not used to estimate the
Gompertz function
Deaths / day,
axis is on the left
Blue line: today
Blue dots: cumulative cases not
used to estimate Gompertz
function
Cumulative cases
(yesterday’s cases)
and cumulative deaths
(yesterday’s deaths)
Axis for cases / day.
Axis for deaths / day
appears to the right.
Geographic
location
Date of analysis,
also shown as
blue vertical line
below
Purple wedge: 98% ensemble
prediction interval from COVID-19
Forecast Hub (USA and US
States only)
Worldwide
33,671,472
1,111,148
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Worldwide projection as of 2020-08-24
0
100,000
200,000
300,000
0
5,000
10,000
15,000
Cases/Day
Deaths/Day
Cases: 23,419,687 (216,886) -- Deaths: 808,660 (4,260) -- Case Mortality: 3.5% -- Daily Change: -0.5% Cases, -0.7% Deaths
2020-08-24 Summary: 3
USA
7,569,160
225,435
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-08-24
Mother'sDay
MemorialDay
July4th
July15,20200
20,000
40,000
60,000
0
1,000
2,000
3,000
Cases/Day
Deaths/Day
Cases: 5,701,679 (34,567) -- Deaths: 176,802 (449) -- Case Mortality: 3.1% -- Daily Change: -2.1% Cases, -0.3% Deaths
2020-08-24 Summary: 4
Non-authoritarian Asian ensemble
144,938
2,061
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Japan, South Korea, Thailand, and Vietnam (Population = 328 MM)
Non-authoritarian Asian ensemble projection as of 2020-08-24
0
500
1,000
1,500
0
25
50
75
Cases/Day
Deaths/Day
Cases: 84,734 (1,015) -- Deaths: 1,582 (10) -- Case Mortality: 1.9% -- Daily Change: +0.1% Cases, +3.7% Deaths
2020-08-24 Summary: 5
Western Europe
1,987,225
156,743
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM)
Western Europe projection as of 2020-08-24
0
20,000
40,000
60,000
0
1,000
2,000
3,000
Cases/Day
Deaths/Day
Cases: 1,619,804 (8,747) -- Deaths: 153,915 (21) -- Case Mortality: 9.5% -- Daily Change: +2.7% Cases, +1.3% Deaths
2020-08-24 Summary: 6
Worldwide cases
USA
BRA
IND
RUS
ZAF
PER
MEX
COL
CHL
ESP
IRN
ARG
GBR
SAU
BGD
PAK
FRA
ITA
TUR
DEU
IRQ
PHL
IDN
CAN
BOL
ECU
UKR
KAZ
ISR
EGY
DOM
CHN
SWE
BEL
ROU
BLR
NLD
GTM
JPN
POL
PRT
HND
MAR
NGA
GHA
KGZ
DZA
ETH
CHE
VEN
UZB
AFG
AZE
KEN
NPL
SRB
AUT
AUS
SLV
CZE
CMR
KOR
CIV
DNK
BGR
USA
0
2,000,000
4,000,000
6,000,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-08-24 Summary: 7
Worldwide cases
CHL
PER
BRA
USA
ISR
ZAF
COL
BOL
SAU
ESP
SWE
DOM
ARG
KGZ
BEL
ECU
BLR
HND
RUS
KAZ
IRQ
GBR
IRN
CHE
PRT
GTM
MEX
ITA
AZE
FRA
SRB
NLD
CAN
ROU
SLV
TUR
AUT
DNK
DEU
IND
UKR
CZE
BGR
PHL
PRY
BGD
GHA
PAK
LBY
POL
MAR
FIN
VEN
UZB
AFG
DZA
EGY
AUS
TJK
NPL
CMR
SEN
ZMB
HTI
GIN
USA
None
1 in 200
1 in 100
1 in 67
1 in 50
1 in 40
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-08-24 Summary: 8
Average new cases over past 7 days
PER
COL
BRA
ISR
ARG
USA
ESP
BOL
IRQ
CHL
DOM
HND
PRY
ZAF
ECU
IND
GTM
FRA
LBY
ROU
MEX
BEL
SAU
UKR
MAR
PHL
SLV
RUS
NLD
IRN
CHE
VEN
KGZ
AUT
NPL
CZE
SWE
GRC
SRB
UZB
ZMB
DNK
PRT
POL
AZE
GBR
ETH
BGR
TUR
KAZ
BGD
DEU
BLR
ITA
DZA
SVK
CAN
AUS
TUN
RWA
SEN
IDN
KEN
GIN
JPN
USA
None
1 in 20,000
1 in 10,000
1 in 6,667
1 in 5,000
1 in 4,000
1 in 3,333
1 in 2,857
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagecases/day
Average new cases over past 7 days
Excludes countries with population < 5,000,000
2020-08-24 Summary: 9
Worldwide deaths
USA
BRA
MEX
IND
GBR
ITA
FRA
ESP
PER
IRN
COL
RUS
ZAF
CHL
BEL
DEU
CAN
ARG
IDN
IRQ
ECU
PAK
NLD
TUR
SWE
EGY
CHN
BOL
BGD
SAU
ROU
PHL
GTM
UKR
CHE
POL
PRT
HND
DOM
DZA
KAZ
AFG
JPN
KGZ
NGA
MAR
ISR
SDN
AUT
SRB
ETH
SLV
BLR
DNK
HUN
YEM
KEN
BGR
AZE
AUS
CZE
CMR
FIN
VEN
KOR
USA
0
50,000
100,000
150,000
200,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-08-24 Summary: 10
Worldwide deaths
PER
BEL
ESP
GBR
CHL
SWE
ITA
BRA
USA
MEX
FRA
BOL
ECU
COL
NLD
IRN
CAN
ZAF
CHE
HND
IRQ
GTM
KGZ
ARG
PRT
DOM
ROU
SAU
RUS
ISR
DEU
DNK
SRB
SLV
KAZ
AUT
TUR
BGR
BLR
EGY
FIN
AZE
HUN
POL
UKR
IND
AFG
DZA
CZE
PAK
SDN
PHL
LBY
PRY
IDN
MAR
BGD
AUS
ZMB
YEM
NIC
GRC
HTI
CMR
SEN
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-08-24 Summary: 11
Average daily deaths over past 7 days
COL
PER
BOL
BRA
MEX
ARG
ZAF
CHL
USA
ISR
IRQ
GTM
IRN
ECU
ROU
DOM
HND
PRY
SAU
KAZ
SLV
MAR
BGR
LBY
IND
AUS
ESP
RUS
BEL
UKR
PHL
BLR
SRB
SWE
IDN
POL
DZA
TUR
BGD
NLD
ETH
ZWE
VEN
PRT
KEN
UZB
ZMB
FRA
CZE
NPL
TUN
GRC
AZE
EGY
SYR
CAN
CHE
SEN
GHA
GBR
YEM
NIC
AGO
ITA
MWI
USA
None
1 in 500,000
1 in 250,000
1 in 166,667
1 in 125,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagedeaths/day
Average daily deaths over past 7 days
Excludes countries with population < 5,000,000
2020-08-24 Summary: 12
Case Mortality vs. Testing
LUX
AREBHR
MLT
DNK
ISL
ISR
RUS
AUS
LTUUSA
QATMDV
BEL
GBR
PRT
BLR
IRL
NZL
KWT
CAN
SAU
SRBLVA
SGP
AUT
KAZ
DEU
CHL
ESP
CHE
NOREST
FINROU
GRC
ITA
CZE
NLD
TUR
SVN
POL
PANZAF
SVK
BGR
COL
MAR
URYSLV
HUN
HRV
MYS
IRN
KOR
IRQ
UKR
CUB
RWA
IND
PRY
CRI
ARG
PHL
BRA
NPL
BOL
PER
GHA
ECU
JPNPAK
TUN
MEX
BGD
SEN
FJI
KEN
UGA
IDN
TGO
ETH
ZWE
THA
CIV
TWN
VNM
MMR
NGA
USA
0
5
10
0 20 40 60
% Tested
%CaseMortality
Case Mortality vs. Testing as of 2020-08-24
ARE: United Arab Emirates, BHR:Bahrain, MLT: Malta, ISR: Israel, LTU: Lithuania, ISL: Iceland
2020-08-24 Summary: 13
Mortality Trends
0
2
4
6
8
10
12
14
USCaseRateMortality
Mortality Type:
13 day rolling median
Cumulative
Daily Raw
Daily vs. Cumulative US Case Rate Mortality
Last week excluded because deaths are often backdated
2020-08-24 Summary: 14
Change in New Cases per Day
New cases are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
New cases by state as of 2020-08-24
2020-08-24 Summary: 15
Cases as a Percent of Peak Cases
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Cases as a Percent of Peak Cases
2020-08-24 Summary: 16
Change in New Deaths per Day
New deaths are:
Increasing > +0.5%
Increasing between +0.1% and +0.5%
No Change (-0.1% to +0.1%)
Decreasing between -0.1% and -0.5%
Decreasing > -0.5%
New deaths by state as of 2020-08-24
2020-08-24 Summary: 17
Deaths as a Percent of Peak Deaths
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Deaths as a Percent of Peak Deaths
2020-08-24 Summary: 18
Change in cases vs change in deaths
AL
AK
AZ
AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
IL
IN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
-6
-3
0
3
6
-3 0 3 6
Change in cases (%/day)
Changeindeaths(%/day)
Change in cases vs change in deaths over last 14 days as of 2020-08-24
2020-08-24 Summary: 19
Total US COVID-19 Cases
CA
FL
TX
NY
GA
IL
AZ
NJ
NC
TN
LA
PA
MA
AL
OH
VA
SC
MI
MD
IN
MS
MO
WA
WI
MN
NV
AR
IA
CO
OK
CT
UT
KY
KS
NE
ID
OR
NM
RI
DE
DC
SD
ND
WV
NH
HI
MT
AK
ME
WY
VT
0
200,000
400,000
600,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Totalcases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.41, p governor: 0.8. NB: association != causation.
2020-08-24 Summary: 20
Total US COVID-19 Cases
LA
FL
AZ
MS
GA
AL
NY
SC
NJ
NV
TN
TX
RI
DC
AR
MA
IA
IL
DE
MD
CA
ID
NE
UT
NC
CT
OK
VA
ND
KS
IN
SD
MO
MN
WI
NM
MI
PA
OH
KY
CO
WA
AK
WY
MT
OR
NH
WV
HI
ME
VT
None
1 in 200
1 in 100
1 in 67
1 in 50
1 in 40
1 in 33
1 in 29
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalCases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.95, p governor: 0.15. NB: association != causation.
2020-08-24 Summary: 21
Average US COVID-19 cases over the past
7 days
MS
ND
TN
GA
TX
NV
AL
FL
MO
IA
AR
OK
LA
ID
SD
CA
KS
HI
IL
SC
NC
IN
WI
KY
MN
UT
NE
VA
AK
AZ
MD
MT
RI
OH
WY
WA
DC
NM
DE
MI
OR
WV
PA
CO
MA
NY
NJ
CT
ME
NH
VT
None
1 in 20,000
1 in 10,000
1 in 6,667
1 in 5,000
1 in 4,000
1 6 11 16 21 26 31 36 41 46 51
Rank
NewCases/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 cases over the past 7 days
p masks as of July 20, 2020: 0.013, p governor: 0.0073. NB: association != causation.
2020-08-24 Summary: 22
Total US COVID-19 Deaths
NY
NJ
CA
TX
FL
MA
IL
PA
MI
GA
AZ
LA
CT
OH
MD
IN
NC
SC
VA
MS
AL
CO
WA
MN
TN
MO
NV
WI
IA
RI
KY
NM
OK
AR
DC
DE
NH
KS
OR
UT
NE
ID
WV
SD
ND
ME
MT
VT
HI
WY
AK
0
10,000
20,000
30,000
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.067, p governor: 0.23. NB: association != causation.
2020-08-24 Summary: 23
Total US COVID-19 Deaths
NJ
NY
MA
CT
LA
RI
DC
MS
MI
AZ
IL
DE
MD
PA
SC
GA
FL
IN
AL
TX
NV
NM
OH
CO
IA
MN
NH
CA
VA
WA
NC
MO
TN
AR
NE
KY
WI
OK
SD
ND
ID
KS
UT
WV
OR
ME
VT
MT
WY
AK
HI
None
1 in 2,000
1 in 1,000
1 in 667
1 in 500
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.032, p governor: 0.22. NB: association != causation.
2020-08-24 Summary: 24
Average US COVID-19 deaths over the past
7 days
LA
MS
TX
SC
FL
GA
NV
AZ
TN
AR
AL
CA
ID
ND
IA
NC
OK
NM
KY
MA
IN
OH
MN
WA
MO
WY
IL
WV
SD
VA
DC
MD
NE
RI
PA
MT
WI
OR
MI
DE
KS
UT
AK
HI
NH
NJ
CO
ME
NY
CT
VT
None
1 in 500,000
1 in 250,000
1 in 166,667
1 in 125,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Deaths/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 deaths over the past 7 days
p masks as of July 20, 2020: 0.21, p governor: 0.0087. NB: association != causation.
2020-08-24 Summary: 25
Daily testing trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Dailytestingfrommintomax
Daily testing trends from min to max
Line = Friedman's supersmoother
2020-08-24 Summary: 26
Change in daily tests over past 14 days
IL
HI
MA
TN
WV
ME
NC
MI
AL
OK
MD
AR
NY
IN
NJ
IA
VT
WY
ND
VA
DC
RI
SD
MN
CA
KY
OH
NH
AK
NM
PA
MO
NE
WI
LA
TX
ID
OR
NV
DE
AZ
SC
GA
KS
CT
UT
MS
FL
CO
MT
WA
-4.0
-2.0
0.0
2.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeindailytests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in daily tests over past 14 days
p masks as of July 20, 2020: 0.14, p governor: 0.62. NB: association != causation.
2020-08-24 Summary: 27
Percent Tested
AK
NY
LA
DC
NM
TN
NJ
IL
CT
CA
MI
ND
RI
DE
MA
WV
AR
FL
OK
GA
WI
MD
NC
MT
UT
VT
MN
AL
NV
IA
MS
NE
SC
ME
VA
OH
KY
TX
AZ
SD
MO
IN
NH
WA
ID
KS
HI
OR
PA
CO
WY
0
10
20
30
40
50
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentTested
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent Tested
p masks as of July 20, 2020: 0.11, p governor: 0.46. NB: association != causation.
2020-08-24 Summary: 28
Percent of Positive COVID Tests
AZ
MS
FL
SC
ID
AL
TX
GA
NV
KS
IA
NE
IN
RI
AR
CO
MD
PA
SD
MO
LA
MA
UT
VA
DE
NC
NJ
TN
WA
MN
OK
WI
CA
IL
KY
OH
NY
WY
ND
DC
CT
OR
MI
NH
HI
NM
MT
WV
ME
AK
VT
0.0
5.0
10.0
15.0
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentofPositiveTests
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent of Positive COVID Tests
p masks as of July 20, 2020: 0.098, p governor: 0.012. NB: association != causation.
2020-08-24 Summary: 29
Positive fraction trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Fractionpositivefrommintomax
Positive fraction trends from min to max
2020-08-24 Summary: 30
Change in positive tests over past 14 days
HI
MT
ND
WA
MS
AK
KY
MO
WY
NV
NC
ID
KS
SD
OK
WI
IA
TX
UT
FL
CA
OR
MN
NE
IN
GA
TN
WV
DE
CO
NM
OH
VA
SC
LA
IL
PA
AZ
AR
RI
AL
NH
MI
MD
VT
ME
NJ
CT
NY
MA
DC
-1.0
0.0
1.0
2.0
3.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinpositivetests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in positive tests over past 14 days
p masks as of July 20, 2020: 0.017, p governor: 0.45. NB: association != causation.
2020-08-24 Summary: 31
Change in tests vs change in positive tests
AL
AK
AZ AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
IL
IN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA RI
SC
SD
TN
TXUT
VT
VA
WA
WV
WI
WY
-1
0
1
2
3
-4 -2 0
Change in tests (%/day)
Changeinpositivetests(%/day)
Change in tests vs change in positive tests last 14 days as of 2020-08-24
2020-08-24 Summary: 32
Current hospitalizations as a percent of peak
since FebruaryAK
HI
KS
MT
WV
WY
AR
MO
ND
KY
OK
ID
MS
NC
VA
TN
NE
OH
GA
IA
NV
AL
CA
WA
SD
SC
IN
OR
UT
WI
MN
LA
TX
FL
NM
IL
VT
MD
AZ
RI
CO
DC
PA
MI
DE
ME
NH
MA
NJ
CT
NY
0
30
60
90
1 6 11 16 21 26 31 36 41 46 51
Rank
Hospitalizations(%ofpeak)
Masks
No
Yes
Governor
aa
Democratic
Republican
Current hospitalizations as a percent of peak since February
p masks as of July 20, 2020: 0.023, p governor: 0.058. NB: association != causation.
2020-08-24 Summary: 33
Hospitalizations trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Hospitalizationsfrommintomax
Hospitalizations trends from min to max
2020-08-24 Summary: 34
Change in hospitalizations over past 14
days
HI
MT
AK
WY
VT
IA
KS
WV
DE
SD
WI
AR
ND
MO
OK
IL
MN
NE
RI
DC
VA
MI
WA
ID
IN
KY
NY
NC
MS
CT
CA
MD
OH
MA
GA
PA
TN
NV
OR
CO
AL
SC
LA
TX
ME
FL
UT
NM
NJ
NH
AZ
-5.0
-2.5
0.0
2.5
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinhospitalizations(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in hospitalizations over past 14 days
p masks as of July 20, 2020: 0.3, p governor: 0.93. NB: association != causation.
2020-08-24 Summary: 35
Case Mortality vs. Testing
AL
AK
AZ
AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
ILIN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
2.5
5.0
7.5
10 20 30 40
% Tested
%Mortality
Mortality vs. Testing as of 2020-08-24
2020-08-24 Summary: 36

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COVID-19 Update (Summary): August 24, 2020

  • 1. Caveats and Comments 1 Overview: This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh. You are welcome to use the R code on GitHub for any purpose. I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk. I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist. There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2. Data sources: • USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv • USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv • USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv • Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv • Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv • Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv • Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv • Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ • Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv Models: 1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 = 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50% rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures). Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/). 2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases. Locations The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g., China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add. Stay safe, well, resilient, and kind. Steve Shafer steven.shafer@Stanford.edu
  • 2. 2,586,092 152,804 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Actual(points)/Predicted(line) Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-05-27 0 10,000 20,000 30,000 0 2,000 4,000 6,000 Cases/Day Deaths/Day Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5% Explanation of the Figures 2 Brown dots: cumulative tests Red dots: cumulative cases used to estimate Gompertz function, presently set to last 3 weeks Red line: predicted cumulative cases based on the Gompertz function estimated from the red dots Red number: total cases on June 30th, based on the Gompertz function estimated from the red dots Black number: total Deaths on July 31th, based on log-linear regression of the past 21 days Black line: predicted cumulative deaths, based on a log linear regression of deaths over past 21 days. Axis for deaths / day, usually 1/10th of the axis for cases / day on the left side of the figure. Green line: linear regression over 8 days, used to calculate percent increase / decrease (see below) Daily change in cases, calculated as the slope of the green line (above left) / number of new cases yesterday. Case mortality: cumulative deaths / cumulative cases. Cases / day calculated from cumulative cases used to estimate the Gompertz function Cases / day calculated from cumulative cases not used to estimate the Gompertz function Deaths / day, axis is on the left Blue line: today Blue dots: cumulative cases not used to estimate Gompertz function Cumulative cases (yesterday’s cases) and cumulative deaths (yesterday’s deaths) Axis for cases / day. Axis for deaths / day appears to the right. Geographic location Date of analysis, also shown as blue vertical line below Purple wedge: 98% ensemble prediction interval from COVID-19 Forecast Hub (USA and US States only)
  • 3. Worldwide 33,671,472 1,111,148 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Worldwide projection as of 2020-08-24 0 100,000 200,000 300,000 0 5,000 10,000 15,000 Cases/Day Deaths/Day Cases: 23,419,687 (216,886) -- Deaths: 808,660 (4,260) -- Case Mortality: 3.5% -- Daily Change: -0.5% Cases, -0.7% Deaths 2020-08-24 Summary: 3
  • 4. USA 7,569,160 225,435 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-08-24 Mother'sDay MemorialDay July4th July15,20200 20,000 40,000 60,000 0 1,000 2,000 3,000 Cases/Day Deaths/Day Cases: 5,701,679 (34,567) -- Deaths: 176,802 (449) -- Case Mortality: 3.1% -- Daily Change: -2.1% Cases, -0.3% Deaths 2020-08-24 Summary: 4
  • 5. Non-authoritarian Asian ensemble 144,938 2,061 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Japan, South Korea, Thailand, and Vietnam (Population = 328 MM) Non-authoritarian Asian ensemble projection as of 2020-08-24 0 500 1,000 1,500 0 25 50 75 Cases/Day Deaths/Day Cases: 84,734 (1,015) -- Deaths: 1,582 (10) -- Case Mortality: 1.9% -- Daily Change: +0.1% Cases, +3.7% Deaths 2020-08-24 Summary: 5
  • 6. Western Europe 1,987,225 156,743 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM) Western Europe projection as of 2020-08-24 0 20,000 40,000 60,000 0 1,000 2,000 3,000 Cases/Day Deaths/Day Cases: 1,619,804 (8,747) -- Deaths: 153,915 (21) -- Case Mortality: 9.5% -- Daily Change: +2.7% Cases, +1.3% Deaths 2020-08-24 Summary: 6
  • 9. Average new cases over past 7 days PER COL BRA ISR ARG USA ESP BOL IRQ CHL DOM HND PRY ZAF ECU IND GTM FRA LBY ROU MEX BEL SAU UKR MAR PHL SLV RUS NLD IRN CHE VEN KGZ AUT NPL CZE SWE GRC SRB UZB ZMB DNK PRT POL AZE GBR ETH BGR TUR KAZ BGD DEU BLR ITA DZA SVK CAN AUS TUN RWA SEN IDN KEN GIN JPN USA None 1 in 20,000 1 in 10,000 1 in 6,667 1 in 5,000 1 in 4,000 1 in 3,333 1 in 2,857 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagecases/day Average new cases over past 7 days Excludes countries with population < 5,000,000 2020-08-24 Summary: 9
  • 11. Worldwide deaths PER BEL ESP GBR CHL SWE ITA BRA USA MEX FRA BOL ECU COL NLD IRN CAN ZAF CHE HND IRQ GTM KGZ ARG PRT DOM ROU SAU RUS ISR DEU DNK SRB SLV KAZ AUT TUR BGR BLR EGY FIN AZE HUN POL UKR IND AFG DZA CZE PAK SDN PHL LBY PRY IDN MAR BGD AUS ZMB YEM NIC GRC HTI CMR SEN USA None 1 in 5,000 1 in 2,500 1 in 1,667 1 in 1,250 1 in 1,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Totaldeathstodate Worldwide deaths Excludes countries with population < 5,000,000 2020-08-24 Summary: 11
  • 12. Average daily deaths over past 7 days COL PER BOL BRA MEX ARG ZAF CHL USA ISR IRQ GTM IRN ECU ROU DOM HND PRY SAU KAZ SLV MAR BGR LBY IND AUS ESP RUS BEL UKR PHL BLR SRB SWE IDN POL DZA TUR BGD NLD ETH ZWE VEN PRT KEN UZB ZMB FRA CZE NPL TUN GRC AZE EGY SYR CAN CHE SEN GHA GBR YEM NIC AGO ITA MWI USA None 1 in 500,000 1 in 250,000 1 in 166,667 1 in 125,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagedeaths/day Average daily deaths over past 7 days Excludes countries with population < 5,000,000 2020-08-24 Summary: 12
  • 13. Case Mortality vs. Testing LUX AREBHR MLT DNK ISL ISR RUS AUS LTUUSA QATMDV BEL GBR PRT BLR IRL NZL KWT CAN SAU SRBLVA SGP AUT KAZ DEU CHL ESP CHE NOREST FINROU GRC ITA CZE NLD TUR SVN POL PANZAF SVK BGR COL MAR URYSLV HUN HRV MYS IRN KOR IRQ UKR CUB RWA IND PRY CRI ARG PHL BRA NPL BOL PER GHA ECU JPNPAK TUN MEX BGD SEN FJI KEN UGA IDN TGO ETH ZWE THA CIV TWN VNM MMR NGA USA 0 5 10 0 20 40 60 % Tested %CaseMortality Case Mortality vs. Testing as of 2020-08-24 ARE: United Arab Emirates, BHR:Bahrain, MLT: Malta, ISR: Israel, LTU: Lithuania, ISL: Iceland 2020-08-24 Summary: 13
  • 14. Mortality Trends 0 2 4 6 8 10 12 14 USCaseRateMortality Mortality Type: 13 day rolling median Cumulative Daily Raw Daily vs. Cumulative US Case Rate Mortality Last week excluded because deaths are often backdated 2020-08-24 Summary: 14
  • 15. Change in New Cases per Day New cases are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% New cases by state as of 2020-08-24 2020-08-24 Summary: 15
  • 16. Cases as a Percent of Peak Cases HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Cases as a Percent of Peak Cases 2020-08-24 Summary: 16
  • 17. Change in New Deaths per Day New deaths are: Increasing > +0.5% Increasing between +0.1% and +0.5% No Change (-0.1% to +0.1%) Decreasing between -0.1% and -0.5% Decreasing > -0.5% New deaths by state as of 2020-08-24 2020-08-24 Summary: 17
  • 18. Deaths as a Percent of Peak Deaths HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Deaths as a Percent of Peak Deaths 2020-08-24 Summary: 18
  • 19. Change in cases vs change in deaths AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY -6 -3 0 3 6 -3 0 3 6 Change in cases (%/day) Changeindeaths(%/day) Change in cases vs change in deaths over last 14 days as of 2020-08-24 2020-08-24 Summary: 19
  • 20. Total US COVID-19 Cases CA FL TX NY GA IL AZ NJ NC TN LA PA MA AL OH VA SC MI MD IN MS MO WA WI MN NV AR IA CO OK CT UT KY KS NE ID OR NM RI DE DC SD ND WV NH HI MT AK ME WY VT 0 200,000 400,000 600,000 1 6 11 16 21 26 31 36 41 46 51 Rank Totalcases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.41, p governor: 0.8. NB: association != causation. 2020-08-24 Summary: 20
  • 21. Total US COVID-19 Cases LA FL AZ MS GA AL NY SC NJ NV TN TX RI DC AR MA IA IL DE MD CA ID NE UT NC CT OK VA ND KS IN SD MO MN WI NM MI PA OH KY CO WA AK WY MT OR NH WV HI ME VT None 1 in 200 1 in 100 1 in 67 1 in 50 1 in 40 1 in 33 1 in 29 1 6 11 16 21 26 31 36 41 46 51 Rank TotalCases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.95, p governor: 0.15. NB: association != causation. 2020-08-24 Summary: 21
  • 22. Average US COVID-19 cases over the past 7 days MS ND TN GA TX NV AL FL MO IA AR OK LA ID SD CA KS HI IL SC NC IN WI KY MN UT NE VA AK AZ MD MT RI OH WY WA DC NM DE MI OR WV PA CO MA NY NJ CT ME NH VT None 1 in 20,000 1 in 10,000 1 in 6,667 1 in 5,000 1 in 4,000 1 6 11 16 21 26 31 36 41 46 51 Rank NewCases/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 cases over the past 7 days p masks as of July 20, 2020: 0.013, p governor: 0.0073. NB: association != causation. 2020-08-24 Summary: 22
  • 23. Total US COVID-19 Deaths NY NJ CA TX FL MA IL PA MI GA AZ LA CT OH MD IN NC SC VA MS AL CO WA MN TN MO NV WI IA RI KY NM OK AR DC DE NH KS OR UT NE ID WV SD ND ME MT VT HI WY AK 0 10,000 20,000 30,000 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.067, p governor: 0.23. NB: association != causation. 2020-08-24 Summary: 23
  • 24. Total US COVID-19 Deaths NJ NY MA CT LA RI DC MS MI AZ IL DE MD PA SC GA FL IN AL TX NV NM OH CO IA MN NH CA VA WA NC MO TN AR NE KY WI OK SD ND ID KS UT WV OR ME VT MT WY AK HI None 1 in 2,000 1 in 1,000 1 in 667 1 in 500 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.032, p governor: 0.22. NB: association != causation. 2020-08-24 Summary: 24
  • 25. Average US COVID-19 deaths over the past 7 days LA MS TX SC FL GA NV AZ TN AR AL CA ID ND IA NC OK NM KY MA IN OH MN WA MO WY IL WV SD VA DC MD NE RI PA MT WI OR MI DE KS UT AK HI NH NJ CO ME NY CT VT None 1 in 500,000 1 in 250,000 1 in 166,667 1 in 125,000 1 6 11 16 21 26 31 36 41 46 51 Rank Deaths/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 deaths over the past 7 days p masks as of July 20, 2020: 0.21, p governor: 0.0087. NB: association != causation. 2020-08-24 Summary: 25
  • 26. Daily testing trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Dailytestingfrommintomax Daily testing trends from min to max Line = Friedman's supersmoother 2020-08-24 Summary: 26
  • 27. Change in daily tests over past 14 days IL HI MA TN WV ME NC MI AL OK MD AR NY IN NJ IA VT WY ND VA DC RI SD MN CA KY OH NH AK NM PA MO NE WI LA TX ID OR NV DE AZ SC GA KS CT UT MS FL CO MT WA -4.0 -2.0 0.0 2.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeindailytests(%/day) Masks No Yes Governor aa Democratic Republican Change in daily tests over past 14 days p masks as of July 20, 2020: 0.14, p governor: 0.62. NB: association != causation. 2020-08-24 Summary: 27
  • 28. Percent Tested AK NY LA DC NM TN NJ IL CT CA MI ND RI DE MA WV AR FL OK GA WI MD NC MT UT VT MN AL NV IA MS NE SC ME VA OH KY TX AZ SD MO IN NH WA ID KS HI OR PA CO WY 0 10 20 30 40 50 1 6 11 16 21 26 31 36 41 46 51 Rank PercentTested Masks No Yes Governor aa Democratic Republican Percent Tested p masks as of July 20, 2020: 0.11, p governor: 0.46. NB: association != causation. 2020-08-24 Summary: 28
  • 29. Percent of Positive COVID Tests AZ MS FL SC ID AL TX GA NV KS IA NE IN RI AR CO MD PA SD MO LA MA UT VA DE NC NJ TN WA MN OK WI CA IL KY OH NY WY ND DC CT OR MI NH HI NM MT WV ME AK VT 0.0 5.0 10.0 15.0 1 6 11 16 21 26 31 36 41 46 51 Rank PercentofPositiveTests Masks No Yes Governor aa Democratic Republican Percent of Positive COVID Tests p masks as of July 20, 2020: 0.098, p governor: 0.012. NB: association != causation. 2020-08-24 Summary: 29
  • 30. Positive fraction trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Fractionpositivefrommintomax Positive fraction trends from min to max 2020-08-24 Summary: 30
  • 31. Change in positive tests over past 14 days HI MT ND WA MS AK KY MO WY NV NC ID KS SD OK WI IA TX UT FL CA OR MN NE IN GA TN WV DE CO NM OH VA SC LA IL PA AZ AR RI AL NH MI MD VT ME NJ CT NY MA DC -1.0 0.0 1.0 2.0 3.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinpositivetests(%/day) Masks No Yes Governor aa Democratic Republican Change in positive tests over past 14 days p masks as of July 20, 2020: 0.017, p governor: 0.45. NB: association != causation. 2020-08-24 Summary: 31
  • 32. Change in tests vs change in positive tests AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TXUT VT VA WA WV WI WY -1 0 1 2 3 -4 -2 0 Change in tests (%/day) Changeinpositivetests(%/day) Change in tests vs change in positive tests last 14 days as of 2020-08-24 2020-08-24 Summary: 32
  • 33. Current hospitalizations as a percent of peak since FebruaryAK HI KS MT WV WY AR MO ND KY OK ID MS NC VA TN NE OH GA IA NV AL CA WA SD SC IN OR UT WI MN LA TX FL NM IL VT MD AZ RI CO DC PA MI DE ME NH MA NJ CT NY 0 30 60 90 1 6 11 16 21 26 31 36 41 46 51 Rank Hospitalizations(%ofpeak) Masks No Yes Governor aa Democratic Republican Current hospitalizations as a percent of peak since February p masks as of July 20, 2020: 0.023, p governor: 0.058. NB: association != causation. 2020-08-24 Summary: 33
  • 34. Hospitalizations trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Hospitalizationsfrommintomax Hospitalizations trends from min to max 2020-08-24 Summary: 34
  • 35. Change in hospitalizations over past 14 days HI MT AK WY VT IA KS WV DE SD WI AR ND MO OK IL MN NE RI DC VA MI WA ID IN KY NY NC MS CT CA MD OH MA GA PA TN NV OR CO AL SC LA TX ME FL UT NM NJ NH AZ -5.0 -2.5 0.0 2.5 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinhospitalizations(%/day) Masks No Yes Governor aa Democratic Republican Change in hospitalizations over past 14 days p masks as of July 20, 2020: 0.3, p governor: 0.93. NB: association != causation. 2020-08-24 Summary: 35
  • 36. Case Mortality vs. Testing AL AK AZ AR CA CO CT DE DC FL GA HI ID ILIN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY 2.5 5.0 7.5 10 20 30 40 % Tested %Mortality Mortality vs. Testing as of 2020-08-24 2020-08-24 Summary: 36