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Caveats and Comments
1
Overview:
This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is
available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh.
You are welcome to use the R code on GitHub for any purpose.
I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point
out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk.
I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist.
There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2.
Data sources:
• USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv
• USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv
• USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv
• Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv
• Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv
• Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv
• Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv
• Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ
• Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv
Models:
1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 =
𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50%
rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures).
Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction
interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/).
2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases.
Locations
The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g.,
China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add.
Stay safe, well, resilient, and kind.
Steve Shafer
steven.shafer@Stanford.edu
2,586,092
152,804
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Actual(points)/Predicted(line)
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-05-27
0
10,000
20,000
30,000
0
2,000
4,000
6,000
Cases/Day
Deaths/Day
Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5%
Explanation of the Figures
2
Brown dots:
cumulative tests
Red dots: cumulative cases
used to estimate Gompertz
function, presently set to last
3 weeks
Red line: predicted cumulative
cases based on the Gompertz
function estimated from the red
dots
Red number: total cases
on June 30th, based on
the Gompertz function
estimated from the red
dots
Black number: total
Deaths on July 31th,
based on log-linear
regression of the past
21 days
Black line: predicted
cumulative deaths, based
on a log linear regression
of deaths over past 21
days.
Axis for deaths / day, usually
1/10th of the axis for cases /
day on the left side of the
figure.
Green line: linear regression
over 8 days, used to calculate
percent increase / decrease
(see below)
Daily change in cases,
calculated as the slope of the
green line (above left) /
number of new cases
yesterday.
Case mortality:
cumulative deaths
/ cumulative cases.
Cases / day calculated
from cumulative cases
used to estimate the
Gompertz function
Cases / day calculated
from cumulative cases
not used to estimate the
Gompertz function
Deaths / day,
axis is on the left
Blue line: today
Blue dots: cumulative cases not
used to estimate Gompertz
function
Cumulative cases
(yesterday’s cases)
and cumulative deaths
(yesterday’s deaths)
Axis for cases / day.
Axis for deaths / day
appears to the right.
Geographic
location
Date of analysis,
also shown as
blue vertical line
below
Purple wedge: 98% ensemble
prediction interval from COVID-19
Forecast Hub (USA and US
States only)
Worldwide
33,527,424
1,040,301
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Worldwide projection as of 2020-09-10
0
100,000
200,000
300,000
0
5,000
10,000
15,000
Cases/Day
Deaths/Day
Cases: 27,863,002 (292,991) -- Deaths: 903,670 (6,303) -- Case Mortality: 3.2% -- Daily Change: -0.1% Cases, +0.9% Deaths
2020-09-10 Summary: 3
USA
7,197,720
211,929
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-09-10
Mother'sDay
MemorialDay
July4th
July15,2020
LaborDay
0
20,000
40,000
60,000
0
1,000
2,000
3,000
Cases/Day
Deaths/Day
Cases: 6,361,265 (34,256) -- Deaths: 190,859 (1,206) -- Case Mortality: 3.0% -- Daily Change: -2.6% Cases, -2.1% Deaths
2020-09-10 Summary: 4
Non-authoritarian Asian ensemble
121,079
2,261
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Japan, South Korea, Thailand, and Vietnam (Population = 328 MM)
Non-authoritarian Asian ensemble projection as of 2020-09-10
0
500
1,000
1,500
0
20
40
60
80
Cases/Day
Deaths/Day
Cases: 99,520 (707) -- Deaths: 1,851 (16) -- Case Mortality: 1.9% -- Daily Change: -4.9% Cases, -0.5% Deaths
2020-09-10 Summary: 5
Western Europe
2,371,914
157,369
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM)
Western Europe projection as of 2020-09-10
0
20,000
40,000
60,000
0
1,000
2,000
3,000
Cases/Day
Deaths/Day
Cases: 1,974,611 (26,232) -- Deaths: 155,520 (105) -- Case Mortality: 7.9% -- Daily Change: +4.4% Cases, +3.3% Deaths
2020-09-10 Summary: 6
Worldwide cases
USA
India
Brazil
Russia
Peru
Colombia
Mexico
SouthAfrica
Spain
Argentina
Chile
Iran
France
UnitedKingdom
Bangladesh
SaudiArabia
Pakistan
Turkey
Italy
Iraq
Germany
Philippines
Indonesia
Ukraine
Israel
Canada
Bolivia
Ecuador
Kazakhstan
DominicanRepublic
Egypt
Romania
China
Belgium
Sweden
Netherlands
Guatemala
Morocco
Belarus
Japan
Poland
Honduras
Ethiopia
Portugal
Venezuela
Nigeria
Nepal
Algeria
Ghana
Switzerland
Uzbekistan
Kyrgyzstan
Afghanistan
Azerbaijan
Kenya
Serbia
CzechRepublic
Austria
ElSalvador
Australia
Paraguay
SouthKorea
Libya
Cameroon
Denmark
USA
0
2,000,000
4,000,000
6,000,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-09-10 Summary: 7
Worldwide cases
Chile
Peru
Brazil
USA
Israel
Colombia
Spain
SouthAfrica
Bolivia
Argentina
SaudiArabia
DominicanRepublic
Sweden
Iraq
Honduras
Belgium
Kyrgyzstan
Ecuador
Belarus
Russia
Kazakhstan
Guatemala
Switzerland
Iran
UnitedKingdom
France
Mexico
Portugal
Italy
Netherlands
Azerbaijan
Romania
Serbia
Canada
India
Austria
Turkey
ElSalvador
Paraguay
Denmark
Libya
Ukraine
Germany
CzechRepublic
Philippines
Bulgaria
Morocco
Bangladesh
Venezuela
Ghana
Poland
Nepal
Pakistan
Uzbekistan
Finland
Algeria
Afghanistan
Australia
Tajikistan
Egypt
Greece
Zambia
Cameroon
Senegal
Guinea
USA
None
1 in 200
1 in 100
1 in 67
1 in 50
1 in 40
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-09-10 Summary: 8
Average new cases over past 7 days
Israel
Argentina
Spain
Peru
Colombia
Brazil
Iraq
Paraguay
France
Libya
USA
Chile
Bolivia
DominicanRepublic
India
CzechRepublic
Honduras
Ukraine
Romania
Netherlands
Morocco
Belgium
Switzerland
Mexico
Austria
Guatemala
Hungary
Venezuela
Portugal
Nepal
UnitedKingdom
SouthAfrica
Russia
Denmark
Iran
SaudiArabia
Philippines
Italy
Turkey
Slovakia
Sweden
Belarus
Greece
Canada
Azerbaijan
Tunisia
Bulgaria
Germany
Kyrgyzstan
ElSalvador
Indonesia
Poland
Bangladesh
Uzbekistan
Ethiopia
Jordan
Serbia
Algeria
Zimbabwe
Zambia
Finland
Kazakhstan
Guinea
Tajikistan
Ghana
USA
None
1 in 10,000
1 in 5,000
1 in 3,333
1 in 2,500
1 in 2,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagecases/day
Average new cases over past 7 days
Excludes countries with population < 5,000,000
2020-09-10 Summary: 9
Worldwide deaths
USA
Brazil
India
Mexico
UnitedKingdom
Italy
France
Peru
Spain
Iran
Colombia
Russia
SouthAfrica
Chile
Ecuador
Argentina
Belgium
Germany
Canada
Indonesia
Iraq
Bolivia
Turkey
Pakistan
Netherlands
Sweden
Egypt
China
Bangladesh
SaudiArabia
Romania
Philippines
Ukraine
Guatemala
Poland
Honduras
Switzerland
DominicanRepublic
Portugal
Kazakhstan
Algeria
Morocco
Afghanistan
Japan
Nigeria
Kyrgyzstan
Israel
Ethiopia
Sudan
Australia
ElSalvador
Austria
Serbia
Belarus
Bulgaria
Denmark
Hungary
Kenya
Yemen
Azerbaijan
Paraguay
Venezuela
CzechRepublic
Cameroon
Uzbekistan
USA
0
50,000
100,000
150,000
200,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-09-10 Summary: 10
Worldwide deaths
Peru
Belgium
Ecuador
Spain
Bolivia
Chile
UnitedKingdom
Brazil
Sweden
Mexico
Italy
USA
France
Colombia
Netherlands
Iran
SouthAfrica
Canada
Switzerland
Honduras
Argentina
Iraq
Guatemala
DominicanRepublic
Kyrgyzstan
Romania
Portugal
Israel
SaudiArabia
Russia
Germany
Denmark
ElSalvador
Kazakhstan
Serbia
Bulgaria
Austria
Turkey
Belarus
Paraguay
Azerbaijan
Egypt
Ukraine
India
Finland
Hungary
Poland
Libya
Afghanistan
Algeria
CzechRepublic
Morocco
Philippines
Australia
Pakistan
Indonesia
Sudan
Bangladesh
Greece
Zambia
Nicaragua
Yemen
Haiti
Cameroon
Senegal
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-09-10 Summary: 11
Average daily deaths over past 7 days
Ecuador
Bolivia
Colombia
Argentina
Peru
Mexico
Brazil
Chile
Honduras
Iraq
USA
SouthAfrica
DominicanRepublic
Paraguay
Romania
Iran
Israel
Libya
Spain
Guatemala
Bulgaria
Ukraine
SaudiArabia
Morocco
India
ElSalvador
Russia
Australia
Turkey
Belarus
Philippines
Indonesia
Sweden
Kazakhstan
Nepal
Portugal
Poland
Azerbaijan
Venezuela
France
Greece
CzechRepublic
Belgium
Algeria
Bangladesh
Serbia
Egypt
Ethiopia
Austria
Uzbekistan
Tunisia
Zimbabwe
UnitedKingdom
Italy
Syria
Togo
Angola
Netherlands
Haiti
Hungary
Switzerland
Zambia
Cuba
Japan
Kenya
USA
None
1 in 100,000
1 in 50,000
1 in 33,333
1 in 25,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagedeaths/day
Average daily deaths over past 7 days
Excludes countries with population < 5,000,000
2020-09-10 Summary: 12
Mortality Trends
0
2
4
6
8
10
12
14
USCaseRateMortality
Mortality Type:
13 day rolling median
Cumulative
Daily Raw
Daily vs. Cumulative US Case Rate Mortality
Last week excluded because deaths are often backdated
2020-09-10 Summary: 13
Change in New Cases per Day
New cases are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
New cases by state as of 2020-09-10
2020-09-10 Summary: 14
Cases as a Percent of Peak Cases
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Cases as a Percent of Peak Cases
2020-09-10 Summary: 15
Change in New Deaths per Day
New deaths are:
Increasing > +0.5%
Increasing between +0.1% and +0.5%
No Change (-0.1% to +0.1%)
Decreasing between -0.1% and -0.5%
Decreasing > -0.5%
New deaths by state as of 2020-09-10
2020-09-10 Summary: 16
Deaths as a Percent of Peak Deaths
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Deaths as a Percent of Peak Deaths
2020-09-10 Summary: 17
Change in cases vs change in deaths
AL
AK
AZ
AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
IL
IN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
-6
-3
0
3
6
-10 0
Change in cases (%/day)
Changeindeaths(%/day)
Change in cases vs change in deaths over last 14 days as of 2020-09-10
2020-09-10 Summary: 18
Total US COVID-19 Cases
California
Texas
Florida
NewYork
Georgia
Illinois
Arizona
NewJersey
NorthCarolina
Tennessee
Louisiana
Pennsylvania
Alabama
Ohio
Virginia
Massachusetts
SouthCarolina
Michigan
Maryland
Indiana
Missouri
Mississippi
Wisconsin
Minnesota
Washington
Nevada
Iowa
Arkansas
Oklahoma
Colorado
Utah
Kentucky
Connecticut
Kansas
Nebraska
Idaho
Oregon
NewMexico
RhodeIsland
Delaware
SouthDakota
DistrictofColumbia
NorthDakota
WestVirginia
Hawaii
Montana
NewHampshire
Alaska
Maine
Wyoming
Vermont
0
200,000
400,000
600,000
800,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Totalcases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.46, p governor: 0.79. NB: association != causation.
2020-09-10 Summary: 19
Total US COVID-19 Cases
Louisiana
Florida
Mississippi
Arizona
Alabama
Georgia
SouthCarolina
Tennessee
Nevada
Texas
Iowa
NewYork
Arkansas
NewJersey
RhodeIsland
DistrictofColumbia
Illinois
Idaho
Nebraska
California
Delaware
Maryland
Massachusetts
NorthDakota
SouthDakota
Utah
NorthCarolina
Oklahoma
Kansas
Missouri
Virginia
Connecticut
Indiana
Minnesota
Wisconsin
NewMexico
Kentucky
Michigan
Pennsylvania
Ohio
Colorado
Washington
Alaska
Montana
Wyoming
Hawaii
Oregon
WestVirginia
NewHampshire
Maine
Vermont
None
1 in 100
1 in 50
1 in 33
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalCases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.61, p governor: 0.069. NB: association != causation.
2020-09-10 Summary: 20
Average US COVID-19 cases over the past
7 days
NorthDakota
SouthDakota
Iowa
Missouri
Idaho
Oklahoma
Arkansas
Kansas
Tennessee
Mississippi
Alabama
Georgia
Illinois
Louisiana
SouthCarolina
Nebraska
Wisconsin
Kentucky
Hawaii
Texas
Utah
Florida
Indiana
Minnesota
NorthCarolina
Montana
Virginia
Nevada
Alaska
California
Delaware
Maryland
WestVirginia
Ohio
RhodeIsland
Michigan
Arizona
Pennsylvania
Wyoming
DistrictofColumbia
Washington
NewMexico
Colorado
Oregon
NewJersey
NewYork
Connecticut
NewHampshire
Maine
Massachusetts
Vermont
None
1 in 10,000
1 in 5,000
1 in 3,333
1 6 11 16 21 26 31 36 41 46 51
Rank
NewCases/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 cases over the past 7 days
p masks as of July 20, 2020: 0.0018, p governor: 0.0061. NB: association != causation.
2020-09-10 Summary: 21
Total US COVID-19 Deaths
NewYork
NewJersey
California
Texas
Florida
Massachusetts
Illinois
Pennsylvania
Michigan
Georgia
Arizona
Louisiana
Connecticut
Ohio
Maryland
Indiana
NorthCarolina
SouthCarolina
Virginia
Mississippi
Alabama
Washington
Colorado
Tennessee
Minnesota
Missouri
Nevada
Iowa
Wisconsin
RhodeIsland
Kentucky
Arkansas
Oklahoma
NewMexico
DistrictofColumbia
Delaware
Kansas
Oregon
NewHampshire
Utah
Nebraska
Idaho
WestVirginia
SouthDakota
NorthDakota
Maine
Montana
Hawaii
Vermont
Alaska
Wyoming
0
10,000
20,000
30,000
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.062, p governor: 0.24. NB: association != causation.
2020-09-10 Summary: 22
Total US COVID-19 Deaths
NewJersey
NewYork
Massachusetts
Connecticut
Louisiana
RhodeIsland
Mississippi
DistrictofColumbia
Arizona
Michigan
Illinois
Maryland
Delaware
Pennsylvania
Georgia
SouthCarolina
Florida
Indiana
Texas
Alabama
Nevada
NewMexico
Iowa
Ohio
California
Colorado
Minnesota
NewHampshire
Virginia
Arkansas
Tennessee
NorthCarolina
Missouri
Washington
Idaho
Kentucky
Oklahoma
Nebraska
NorthDakota
Wisconsin
SouthDakota
Kansas
WestVirginia
Utah
Oregon
Montana
Maine
Vermont
Wyoming
Hawaii
Alaska
None
1 in 2,000
1 in 1,000
1 in 667
1 in 500
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.031, p governor: 0.3. NB: association != causation.
2020-09-10 Summary: 23
Average US COVID-19 deaths over the past
7 days
Mississippi
Arkansas
Georgia
SouthCarolina
Texas
Florida
Louisiana
Nevada
Idaho
Arizona
Iowa
Missouri
Tennessee
California
NorthCarolina
Alabama
WestVirginia
Montana
NorthDakota
Kansas
Kentucky
Oklahoma
Illinois
Indiana
NewMexico
Hawaii
Michigan
Massachusetts
Nebraska
DistrictofColumbia
RhodeIsland
Virginia
Wisconsin
Maryland
Pennsylvania
Minnesota
Wyoming
Oregon
SouthDakota
NewJersey
Washington
Ohio
Utah
Colorado
Delaware
Alaska
NewYork
Connecticut
Maine
NewHampshire
Vermont
None
1 in 1,000,000
1 in 500,000
1 in 333,333
1 in 250,000
1 in 200,000
1 in 166,667
1 6 11 16 21 26 31 36 41 46 51
Rank
Deaths/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 deaths over the past 7 days
p masks as of July 20, 2020: 0.48, p governor: 0.025. NB: association != causation.
2020-09-10 Summary: 24
Daily testing trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Dailytestingfrommintomax
Daily testing trends from min to max
Line = Friedman's supersmoother
2020-09-10 Summary: 25
Change in daily tests over past 14 days
Maine
Minnesota
Hawaii
Wyoming
Illinois
Washington
Connecticut
Oklahoma
RhodeIsland
Arkansas
Kentucky
NorthCarolina
Kansas
NorthDakota
NewJersey
Montana
NewYork
Mississippi
Iowa
California
SouthDakota
Nebraska
Missouri
NewHampshire
Ohio
DistrictofColumbia
Michigan
Texas
Utah
Georgia
Pennsylvania
Tennessee
Colorado
NewMexico
Delaware
SouthCarolina
Louisiana
Virginia
Maryland
Alabama
Alaska
Wisconsin
Indiana
Arizona
Oregon
Idaho
Florida
Massachusetts
Nevada
Vermont
WestVirginia
-4.0
-2.0
0.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeindailytests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in daily tests over past 14 days
p masks as of July 20, 2020: 0.52, p governor: 0.027. NB: association != causation.
2020-09-10 Summary: 26
Percent Tested
Alaska
NewYork
DistrictofColumbia
Louisiana
NewMexico
Connecticut
Illinois
NewJersey
Tennessee
California
Michigan
RhodeIsland
NorthDakota
Massachusetts
Delaware
Arkansas
WestVirginia
Montana
Oklahoma
Georgia
NorthCarolina
Vermont
Maryland
Maine
Wisconsin
Florida
Utah
Minnesota
Ohio
Iowa
Washington
Mississippi
Alabama
Nevada
Nebraska
Virginia
SouthCarolina
Kentucky
Texas
SouthDakota
Missouri
Arizona
Indiana
Hawaii
NewHampshire
Kansas
Idaho
Wyoming
Oregon
Pennsylvania
Colorado
0
20
40
60
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentTested
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent Tested
p masks as of July 20, 2020: 0.043, p governor: 0.2. NB: association != causation.
2020-09-10 Summary: 27
Percent of Positive COVID Tests
Arizona
Mississippi
Florida
Alabama
Idaho
SouthCarolina
Texas
Nevada
Georgia
Kansas
Iowa
SouthDakota
Nebraska
Missouri
Indiana
Arkansas
Maryland
Pennsylvania
Utah
Colorado
Louisiana
Virginia
RhodeIsland
NorthCarolina
Delaware
Tennessee
Oklahoma
Minnesota
Wisconsin
NorthDakota
Massachusetts
NewJersey
Kentucky
California
Illinois
Ohio
Washington
NewYork
Wyoming
Oregon
DistrictofColumbia
Hawaii
Connecticut
Michigan
NewHampshire
NewMexico
Montana
WestVirginia
Alaska
Maine
Vermont
0.0
5.0
10.0
15.0
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentofPositiveTests
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent of Positive COVID Tests
p masks as of July 20, 2020: 0.025, p governor: 0.0042. NB: association != causation.
2020-09-10 Summary: 28
Positive fraction trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Fractionpositivefrommintomax
Positive fraction trends from min to max
2020-09-10 Summary: 29
Change in positive tests over past 14 days
NorthDakota
SouthDakota
WestVirginia
Montana
Alabama
Missouri
Kansas
Kentucky
Oklahoma
Iowa
Hawaii
Wisconsin
Minnesota
Nebraska
Utah
Arkansas
Idaho
Wyoming
Tennessee
Nevada
Indiana
Oregon
Mississippi
Florida
Virginia
SouthCarolina
Alaska
Pennsylvania
Georgia
NewMexico
Louisiana
Maryland
Colorado
Texas
NorthCarolina
Delaware
Ohio
Michigan
California
Illinois
Arizona
NewHampshire
Washington
RhodeIsland
NewJersey
DistrictofColumbia
NewYork
Vermont
Connecticut
Maine
Massachusetts
-1.0
0.0
1.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinpositivetests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in positive tests over past 14 days
p masks as of July 20, 2020: 0.0089, p governor: 0.027. NB: association != causation.
2020-09-10 Summary: 30
Change in tests vs change in positive tests
AL
AK
AZ
AR
CA
CO
CT
DE
DC
FL
GA
HI
ID
IL
IN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
-1
0
1
-4 -2 0
Change in tests (%/day)
Changeinpositivetests(%/day)
Change in tests vs change in positive tests last 14 days as of 2020-09-10
Size of the state font reflects the number of deaths over the past 7 days.
2020-09-10 Summary: 31
Current hospitalizations as a percent of peak
since FebruaryKansas
Montana
NorthDakota
WestVirginia
Hawaii
Missouri
Nebraska
Alaska
Wyoming
SouthDakota
Kentucky
Iowa
Arkansas
Oklahoma
NorthCarolina
Georgia
Virginia
Tennessee
Idaho
Ohio
Mississippi
Utah
Indiana
Alabama
Oregon
Nevada
Washington
California
Minnesota
SouthCarolina
Wisconsin
Louisiana
Texas
NewMexico
Illinois
Florida
RhodeIsland
Colorado
Maryland
DistrictofColumbia
Delaware
Arizona
Pennsylvania
Michigan
Maine
Massachusetts
NewHampshire
NewJersey
Vermont
Connecticut
NewYork
0
30
60
90
1 6 11 16 21 26 31 36 41 46 51
Rank
Hospitalizations(%ofpeak)
Masks
No
Yes
Governor
aa
Democratic
Republican
Current hospitalizations as a percent of peak since February
p masks as of July 20, 2020: 0.017, p governor: 0.063. NB: association != causation.
2020-09-10 Summary: 32
Hospitalizations trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Hospitalizationsfrommintomax
Hospitalizations trends from min to max
2020-09-10 Summary: 33
Change in hospitalizations over past 14
days
Montana
SouthDakota
Delaware
Kansas
Nebraska
Iowa
DistrictofColumbia
WestVirginia
Hawaii
NorthDakota
Utah
Connecticut
Missouri
Massachusetts
Illinois
RhodeIsland
Pennsylvania
Michigan
NewMexico
NewJersey
Virginia
Wyoming
Tennessee
Maine
Kentucky
Arkansas
Alaska
Georgia
Wisconsin
Oregon
NewYork
NorthCarolina
NewHampshire
Indiana
Minnesota
Ohio
Colorado
Maryland
Oklahoma
Idaho
Mississippi
Washington
Louisiana
Alabama
California
SouthCarolina
Texas
Nevada
Arizona
Florida
Vermont
-10.0
-5.0
0.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinhospitalizations(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in hospitalizations over past 14 days
p masks as of July 20, 2020: 0.5, p governor: 0.29. NB: association != causation.
2020-09-10 Summary: 34
Change in New Cases per Day
Direction
Increasing > +2%
Increasing between +0.5% and +2%
No Change (-0.5% to +0.5%)
Decreasing between -0.5% and -2%
Decreasing > -2%
NA
Trends by county as of 2020-09-10
NA = Inadequate data
2020-09-10 Summary: 35

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COVID-19 Update (Summary): September 10, 2020

  • 1. Caveats and Comments 1 Overview: This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh. You are welcome to use the R code on GitHub for any purpose. I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk. I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist. There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2. Data sources: • USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv • USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv • USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv • Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv • Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv • Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv • Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv • Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ • Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv Models: 1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 = 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50% rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures). Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/). 2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases. Locations The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g., China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add. Stay safe, well, resilient, and kind. Steve Shafer steven.shafer@Stanford.edu
  • 2. 2,586,092 152,804 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Actual(points)/Predicted(line) Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-05-27 0 10,000 20,000 30,000 0 2,000 4,000 6,000 Cases/Day Deaths/Day Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5% Explanation of the Figures 2 Brown dots: cumulative tests Red dots: cumulative cases used to estimate Gompertz function, presently set to last 3 weeks Red line: predicted cumulative cases based on the Gompertz function estimated from the red dots Red number: total cases on June 30th, based on the Gompertz function estimated from the red dots Black number: total Deaths on July 31th, based on log-linear regression of the past 21 days Black line: predicted cumulative deaths, based on a log linear regression of deaths over past 21 days. Axis for deaths / day, usually 1/10th of the axis for cases / day on the left side of the figure. Green line: linear regression over 8 days, used to calculate percent increase / decrease (see below) Daily change in cases, calculated as the slope of the green line (above left) / number of new cases yesterday. Case mortality: cumulative deaths / cumulative cases. Cases / day calculated from cumulative cases used to estimate the Gompertz function Cases / day calculated from cumulative cases not used to estimate the Gompertz function Deaths / day, axis is on the left Blue line: today Blue dots: cumulative cases not used to estimate Gompertz function Cumulative cases (yesterday’s cases) and cumulative deaths (yesterday’s deaths) Axis for cases / day. Axis for deaths / day appears to the right. Geographic location Date of analysis, also shown as blue vertical line below Purple wedge: 98% ensemble prediction interval from COVID-19 Forecast Hub (USA and US States only)
  • 3. Worldwide 33,527,424 1,040,301 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Worldwide projection as of 2020-09-10 0 100,000 200,000 300,000 0 5,000 10,000 15,000 Cases/Day Deaths/Day Cases: 27,863,002 (292,991) -- Deaths: 903,670 (6,303) -- Case Mortality: 3.2% -- Daily Change: -0.1% Cases, +0.9% Deaths 2020-09-10 Summary: 3
  • 4. USA 7,197,720 211,929 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-09-10 Mother'sDay MemorialDay July4th July15,2020 LaborDay 0 20,000 40,000 60,000 0 1,000 2,000 3,000 Cases/Day Deaths/Day Cases: 6,361,265 (34,256) -- Deaths: 190,859 (1,206) -- Case Mortality: 3.0% -- Daily Change: -2.6% Cases, -2.1% Deaths 2020-09-10 Summary: 4
  • 5. Non-authoritarian Asian ensemble 121,079 2,261 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Japan, South Korea, Thailand, and Vietnam (Population = 328 MM) Non-authoritarian Asian ensemble projection as of 2020-09-10 0 500 1,000 1,500 0 20 40 60 80 Cases/Day Deaths/Day Cases: 99,520 (707) -- Deaths: 1,851 (16) -- Case Mortality: 1.9% -- Daily Change: -4.9% Cases, -0.5% Deaths 2020-09-10 Summary: 5
  • 6. Western Europe 2,371,914 157,369 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM) Western Europe projection as of 2020-09-10 0 20,000 40,000 60,000 0 1,000 2,000 3,000 Cases/Day Deaths/Day Cases: 1,974,611 (26,232) -- Deaths: 155,520 (105) -- Case Mortality: 7.9% -- Daily Change: +4.4% Cases, +3.3% Deaths 2020-09-10 Summary: 6
  • 9. Average new cases over past 7 days Israel Argentina Spain Peru Colombia Brazil Iraq Paraguay France Libya USA Chile Bolivia DominicanRepublic India CzechRepublic Honduras Ukraine Romania Netherlands Morocco Belgium Switzerland Mexico Austria Guatemala Hungary Venezuela Portugal Nepal UnitedKingdom SouthAfrica Russia Denmark Iran SaudiArabia Philippines Italy Turkey Slovakia Sweden Belarus Greece Canada Azerbaijan Tunisia Bulgaria Germany Kyrgyzstan ElSalvador Indonesia Poland Bangladesh Uzbekistan Ethiopia Jordan Serbia Algeria Zimbabwe Zambia Finland Kazakhstan Guinea Tajikistan Ghana USA None 1 in 10,000 1 in 5,000 1 in 3,333 1 in 2,500 1 in 2,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagecases/day Average new cases over past 7 days Excludes countries with population < 5,000,000 2020-09-10 Summary: 9
  • 12. Average daily deaths over past 7 days Ecuador Bolivia Colombia Argentina Peru Mexico Brazil Chile Honduras Iraq USA SouthAfrica DominicanRepublic Paraguay Romania Iran Israel Libya Spain Guatemala Bulgaria Ukraine SaudiArabia Morocco India ElSalvador Russia Australia Turkey Belarus Philippines Indonesia Sweden Kazakhstan Nepal Portugal Poland Azerbaijan Venezuela France Greece CzechRepublic Belgium Algeria Bangladesh Serbia Egypt Ethiopia Austria Uzbekistan Tunisia Zimbabwe UnitedKingdom Italy Syria Togo Angola Netherlands Haiti Hungary Switzerland Zambia Cuba Japan Kenya USA None 1 in 100,000 1 in 50,000 1 in 33,333 1 in 25,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagedeaths/day Average daily deaths over past 7 days Excludes countries with population < 5,000,000 2020-09-10 Summary: 12
  • 13. Mortality Trends 0 2 4 6 8 10 12 14 USCaseRateMortality Mortality Type: 13 day rolling median Cumulative Daily Raw Daily vs. Cumulative US Case Rate Mortality Last week excluded because deaths are often backdated 2020-09-10 Summary: 13
  • 14. Change in New Cases per Day New cases are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% New cases by state as of 2020-09-10 2020-09-10 Summary: 14
  • 15. Cases as a Percent of Peak Cases HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Cases as a Percent of Peak Cases 2020-09-10 Summary: 15
  • 16. Change in New Deaths per Day New deaths are: Increasing > +0.5% Increasing between +0.1% and +0.5% No Change (-0.1% to +0.1%) Decreasing between -0.1% and -0.5% Decreasing > -0.5% New deaths by state as of 2020-09-10 2020-09-10 Summary: 16
  • 17. Deaths as a Percent of Peak Deaths HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Deaths as a Percent of Peak Deaths 2020-09-10 Summary: 17
  • 18. Change in cases vs change in deaths AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY -6 -3 0 3 6 -10 0 Change in cases (%/day) Changeindeaths(%/day) Change in cases vs change in deaths over last 14 days as of 2020-09-10 2020-09-10 Summary: 18
  • 19. Total US COVID-19 Cases California Texas Florida NewYork Georgia Illinois Arizona NewJersey NorthCarolina Tennessee Louisiana Pennsylvania Alabama Ohio Virginia Massachusetts SouthCarolina Michigan Maryland Indiana Missouri Mississippi Wisconsin Minnesota Washington Nevada Iowa Arkansas Oklahoma Colorado Utah Kentucky Connecticut Kansas Nebraska Idaho Oregon NewMexico RhodeIsland Delaware SouthDakota DistrictofColumbia NorthDakota WestVirginia Hawaii Montana NewHampshire Alaska Maine Wyoming Vermont 0 200,000 400,000 600,000 800,000 1 6 11 16 21 26 31 36 41 46 51 Rank Totalcases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.46, p governor: 0.79. NB: association != causation. 2020-09-10 Summary: 19
  • 20. Total US COVID-19 Cases Louisiana Florida Mississippi Arizona Alabama Georgia SouthCarolina Tennessee Nevada Texas Iowa NewYork Arkansas NewJersey RhodeIsland DistrictofColumbia Illinois Idaho Nebraska California Delaware Maryland Massachusetts NorthDakota SouthDakota Utah NorthCarolina Oklahoma Kansas Missouri Virginia Connecticut Indiana Minnesota Wisconsin NewMexico Kentucky Michigan Pennsylvania Ohio Colorado Washington Alaska Montana Wyoming Hawaii Oregon WestVirginia NewHampshire Maine Vermont None 1 in 100 1 in 50 1 in 33 1 6 11 16 21 26 31 36 41 46 51 Rank TotalCases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.61, p governor: 0.069. NB: association != causation. 2020-09-10 Summary: 20
  • 21. Average US COVID-19 cases over the past 7 days NorthDakota SouthDakota Iowa Missouri Idaho Oklahoma Arkansas Kansas Tennessee Mississippi Alabama Georgia Illinois Louisiana SouthCarolina Nebraska Wisconsin Kentucky Hawaii Texas Utah Florida Indiana Minnesota NorthCarolina Montana Virginia Nevada Alaska California Delaware Maryland WestVirginia Ohio RhodeIsland Michigan Arizona Pennsylvania Wyoming DistrictofColumbia Washington NewMexico Colorado Oregon NewJersey NewYork Connecticut NewHampshire Maine Massachusetts Vermont None 1 in 10,000 1 in 5,000 1 in 3,333 1 6 11 16 21 26 31 36 41 46 51 Rank NewCases/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 cases over the past 7 days p masks as of July 20, 2020: 0.0018, p governor: 0.0061. NB: association != causation. 2020-09-10 Summary: 21
  • 22. Total US COVID-19 Deaths NewYork NewJersey California Texas Florida Massachusetts Illinois Pennsylvania Michigan Georgia Arizona Louisiana Connecticut Ohio Maryland Indiana NorthCarolina SouthCarolina Virginia Mississippi Alabama Washington Colorado Tennessee Minnesota Missouri Nevada Iowa Wisconsin RhodeIsland Kentucky Arkansas Oklahoma NewMexico DistrictofColumbia Delaware Kansas Oregon NewHampshire Utah Nebraska Idaho WestVirginia SouthDakota NorthDakota Maine Montana Hawaii Vermont Alaska Wyoming 0 10,000 20,000 30,000 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.062, p governor: 0.24. NB: association != causation. 2020-09-10 Summary: 22
  • 23. Total US COVID-19 Deaths NewJersey NewYork Massachusetts Connecticut Louisiana RhodeIsland Mississippi DistrictofColumbia Arizona Michigan Illinois Maryland Delaware Pennsylvania Georgia SouthCarolina Florida Indiana Texas Alabama Nevada NewMexico Iowa Ohio California Colorado Minnesota NewHampshire Virginia Arkansas Tennessee NorthCarolina Missouri Washington Idaho Kentucky Oklahoma Nebraska NorthDakota Wisconsin SouthDakota Kansas WestVirginia Utah Oregon Montana Maine Vermont Wyoming Hawaii Alaska None 1 in 2,000 1 in 1,000 1 in 667 1 in 500 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.031, p governor: 0.3. NB: association != causation. 2020-09-10 Summary: 23
  • 24. Average US COVID-19 deaths over the past 7 days Mississippi Arkansas Georgia SouthCarolina Texas Florida Louisiana Nevada Idaho Arizona Iowa Missouri Tennessee California NorthCarolina Alabama WestVirginia Montana NorthDakota Kansas Kentucky Oklahoma Illinois Indiana NewMexico Hawaii Michigan Massachusetts Nebraska DistrictofColumbia RhodeIsland Virginia Wisconsin Maryland Pennsylvania Minnesota Wyoming Oregon SouthDakota NewJersey Washington Ohio Utah Colorado Delaware Alaska NewYork Connecticut Maine NewHampshire Vermont None 1 in 1,000,000 1 in 500,000 1 in 333,333 1 in 250,000 1 in 200,000 1 in 166,667 1 6 11 16 21 26 31 36 41 46 51 Rank Deaths/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 deaths over the past 7 days p masks as of July 20, 2020: 0.48, p governor: 0.025. NB: association != causation. 2020-09-10 Summary: 24
  • 25. Daily testing trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Dailytestingfrommintomax Daily testing trends from min to max Line = Friedman's supersmoother 2020-09-10 Summary: 25
  • 26. Change in daily tests over past 14 days Maine Minnesota Hawaii Wyoming Illinois Washington Connecticut Oklahoma RhodeIsland Arkansas Kentucky NorthCarolina Kansas NorthDakota NewJersey Montana NewYork Mississippi Iowa California SouthDakota Nebraska Missouri NewHampshire Ohio DistrictofColumbia Michigan Texas Utah Georgia Pennsylvania Tennessee Colorado NewMexico Delaware SouthCarolina Louisiana Virginia Maryland Alabama Alaska Wisconsin Indiana Arizona Oregon Idaho Florida Massachusetts Nevada Vermont WestVirginia -4.0 -2.0 0.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeindailytests(%/day) Masks No Yes Governor aa Democratic Republican Change in daily tests over past 14 days p masks as of July 20, 2020: 0.52, p governor: 0.027. NB: association != causation. 2020-09-10 Summary: 26
  • 28. Percent of Positive COVID Tests Arizona Mississippi Florida Alabama Idaho SouthCarolina Texas Nevada Georgia Kansas Iowa SouthDakota Nebraska Missouri Indiana Arkansas Maryland Pennsylvania Utah Colorado Louisiana Virginia RhodeIsland NorthCarolina Delaware Tennessee Oklahoma Minnesota Wisconsin NorthDakota Massachusetts NewJersey Kentucky California Illinois Ohio Washington NewYork Wyoming Oregon DistrictofColumbia Hawaii Connecticut Michigan NewHampshire NewMexico Montana WestVirginia Alaska Maine Vermont 0.0 5.0 10.0 15.0 1 6 11 16 21 26 31 36 41 46 51 Rank PercentofPositiveTests Masks No Yes Governor aa Democratic Republican Percent of Positive COVID Tests p masks as of July 20, 2020: 0.025, p governor: 0.0042. NB: association != causation. 2020-09-10 Summary: 28
  • 29. Positive fraction trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Fractionpositivefrommintomax Positive fraction trends from min to max 2020-09-10 Summary: 29
  • 30. Change in positive tests over past 14 days NorthDakota SouthDakota WestVirginia Montana Alabama Missouri Kansas Kentucky Oklahoma Iowa Hawaii Wisconsin Minnesota Nebraska Utah Arkansas Idaho Wyoming Tennessee Nevada Indiana Oregon Mississippi Florida Virginia SouthCarolina Alaska Pennsylvania Georgia NewMexico Louisiana Maryland Colorado Texas NorthCarolina Delaware Ohio Michigan California Illinois Arizona NewHampshire Washington RhodeIsland NewJersey DistrictofColumbia NewYork Vermont Connecticut Maine Massachusetts -1.0 0.0 1.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinpositivetests(%/day) Masks No Yes Governor aa Democratic Republican Change in positive tests over past 14 days p masks as of July 20, 2020: 0.0089, p governor: 0.027. NB: association != causation. 2020-09-10 Summary: 30
  • 31. Change in tests vs change in positive tests AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY -1 0 1 -4 -2 0 Change in tests (%/day) Changeinpositivetests(%/day) Change in tests vs change in positive tests last 14 days as of 2020-09-10 Size of the state font reflects the number of deaths over the past 7 days. 2020-09-10 Summary: 31
  • 32. Current hospitalizations as a percent of peak since FebruaryKansas Montana NorthDakota WestVirginia Hawaii Missouri Nebraska Alaska Wyoming SouthDakota Kentucky Iowa Arkansas Oklahoma NorthCarolina Georgia Virginia Tennessee Idaho Ohio Mississippi Utah Indiana Alabama Oregon Nevada Washington California Minnesota SouthCarolina Wisconsin Louisiana Texas NewMexico Illinois Florida RhodeIsland Colorado Maryland DistrictofColumbia Delaware Arizona Pennsylvania Michigan Maine Massachusetts NewHampshire NewJersey Vermont Connecticut NewYork 0 30 60 90 1 6 11 16 21 26 31 36 41 46 51 Rank Hospitalizations(%ofpeak) Masks No Yes Governor aa Democratic Republican Current hospitalizations as a percent of peak since February p masks as of July 20, 2020: 0.017, p governor: 0.063. NB: association != causation. 2020-09-10 Summary: 32
  • 33. Hospitalizations trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Hospitalizationsfrommintomax Hospitalizations trends from min to max 2020-09-10 Summary: 33
  • 34. Change in hospitalizations over past 14 days Montana SouthDakota Delaware Kansas Nebraska Iowa DistrictofColumbia WestVirginia Hawaii NorthDakota Utah Connecticut Missouri Massachusetts Illinois RhodeIsland Pennsylvania Michigan NewMexico NewJersey Virginia Wyoming Tennessee Maine Kentucky Arkansas Alaska Georgia Wisconsin Oregon NewYork NorthCarolina NewHampshire Indiana Minnesota Ohio Colorado Maryland Oklahoma Idaho Mississippi Washington Louisiana Alabama California SouthCarolina Texas Nevada Arizona Florida Vermont -10.0 -5.0 0.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinhospitalizations(%/day) Masks No Yes Governor aa Democratic Republican Change in hospitalizations over past 14 days p masks as of July 20, 2020: 0.5, p governor: 0.29. NB: association != causation. 2020-09-10 Summary: 34
  • 35. Change in New Cases per Day Direction Increasing > +2% Increasing between +0.5% and +2% No Change (-0.5% to +0.5%) Decreasing between -0.5% and -2% Decreasing > -2% NA Trends by county as of 2020-09-10 NA = Inadequate data 2020-09-10 Summary: 35