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Caveats and Comments
1
Overview:
This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is
available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh.
You are welcome to use the R code on GitHub for any purpose.
I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point
out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk.
I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist.
There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2.
Data sources:
• USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv
• USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv
• USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv
• Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv
• Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv
• Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv
• Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv
• Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ
• Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv
Models:
1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 =
𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50%
rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures).
Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction
interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/).
2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases.
Locations
The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g.,
China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add.
Stay safe, well, resilient, and kind.
Steve Shafer
steven.shafer@Stanford.edu
2,586,092
152,804
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Actual(points)/Predicted(line)
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-05-27
0
10,000
20,000
30,000
0
2,000
4,000
6,000
Cases/Day
Deaths/Day
Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5%
Explanation of the Figures
2
Brown dots:
cumulative tests
Red dots: cumulative cases
used to estimate Gompertz
function, presently set to last
3 weeks
Red line: predicted cumulative
cases based on the Gompertz
function estimated from the red
dots
Red number: total cases
on June 30th, based on
the Gompertz function
estimated from the red
dots
Black number: total
Deaths on July 31th,
based on log-linear
regression of the past
21 days
Black line: predicted
cumulative deaths, based
on a log linear regression
of deaths over past 21
days.
Axis for deaths / day, usually
1/10th of the axis for cases /
day on the left side of the
figure.
Green line: linear regression
over 8 days, used to calculate
percent increase / decrease
(see below)
Daily change in cases,
calculated as the slope of the
green line (above left) /
number of new cases
yesterday.
Case mortality:
cumulative deaths
/ cumulative cases.
Cases / day calculated
from cumulative cases
used to estimate the
Gompertz function
Cases / day calculated
from cumulative cases
not used to estimate the
Gompertz function
Deaths / day,
axis is on the left
Blue line: today
Blue dots: cumulative cases not
used to estimate Gompertz
function
Cumulative cases
(yesterday’s cases)
and cumulative deaths
(yesterday’s deaths)
Axis for cases / day.
Axis for deaths / day
appears to the right.
Geographic
location
Date of analysis,
also shown as
blue vertical line
below
Purple wedge: 98% ensemble
prediction interval from COVID-19
Forecast Hub (USA and US
States only)
Worldwide
43,105,877
1,210,511
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Worldwide projection as of 2020-10-08
1
10
100
1,000
10,000
100,000
1,000,000
CasesandDeaths/Day
Cases: 36,155,495 (352,460) -- Deaths: 1,055,667 (5,955) -- Case Mortality: 2.9% -- Daily Change: +0.9% Cases, +0.7% Deaths
2020-10-08 Summary: 3
USA
8,505,703
231,248
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
USA projection as of 2020-10-08
Mother'sDay
MemorialDay
July4th
July15,2020
LaborDay
1
10
100
1,000
10,000
100,000
CasesandDeaths/Day
Cases: 7,549,682 (50,341) -- Deaths: 211,801 (915) -- Case Mortality: 2.8% -- Daily Change: +0.5% Cases, -0.9% Deaths
2020-10-08 Summary: 4
Western Europe
3,953,629
169,278
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM)
Western Europe projection as of 2020-10-08
1
10
100
1,000
10,000
100,000
CasesandDeaths/Day
Cases: 2,978,217 (56,727) -- Deaths: 162,370 (321) -- Case Mortality: 5.5% -- Daily Change: +4.3% Cases, +1.7% Deaths
2020-10-08 Summary: 5
Comparison of COVID-19 Cases & Deaths
between US & Europe
Cases
Deaths
50,341
56,727
915
321
3
10
30
100
300
1,000
3,000
10,000
30,000
100,000
Date
DailyCasesandDeaths
Location
USA (318MM)
Western Europe (344MM)
Log plot of 7 day average
Comparison of COVID-19 Cases & Deaths between US & Europe
The numbers on the right are yesterday's figures, and will differ a bit from the plotted rolling mean
2020-10-08 Summary: 6
Non-authoritarian Asian ensemble
128,587
2,390
1
10
100
1,000
10,000
100,000
1,000,000
10,000,000
100,000,000
Cumulative
Phase
Pre-Model
Modeled
Deaths
Tests
Japan, South Korea, Thailand, and Vietnam (Population = 328 MM)
Non-authoritarian Asian ensemble projection as of 2020-10-08
1
10
100
1,000
10,000
CasesandDeaths/Day
Cases: 116,182 (576) -- Deaths: 2,135 (7) -- Case Mortality: 1.8% -- Daily Change: +0.1% Cases, -2.2% Deaths
2020-10-08 Summary: 7
Worldwide cases
USA
India
Brazil
Russia
Colombia
Argentina
Spain
Peru
Mexico
SouthAfrica
France
UnitedKingdom
Iran
Chile
Iraq
Bangladesh
SaudiArabia
Italy
Philippines
Turkey
Pakistan
Indonesia
Germany
Israel
Ukraine
Canada
Netherlands
Ecuador
Romania
Morocco
Belgium
Bolivia
DominicanRepublic
Kazakhstan
Poland
Egypt
Sweden
Guatemala
CzechRepublic
Nepal
China
Japan
Belarus
Portugal
Honduras
Ethiopia
Venezuela
Nigeria
Uzbekistan
Switzerland
Algeria
Austria
Kyrgyzstan
Ghana
Paraguay
Azerbaijan
Kenya
Afghanistan
Libya
Serbia
Hungary
Denmark
ElSalvador
Australia
Tunisia
USA
0
2,000,000
4,000,000
6,000,000
8,000,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-10-08 Summary: 8
Worldwide cases
Israel
Chile
Peru
Brazil
USA
Spain
Argentina
Colombia
Bolivia
SouthAfrica
Belgium
Iraq
DominicanRepublic
SaudiArabia
France
Sweden
Honduras
Ecuador
CzechRepublic
Netherlands
UnitedKingdom
Russia
Kyrgyzstan
Belarus
Switzerland
Portugal
Iran
Guatemala
Mexico
Kazakhstan
Paraguay
Romania
Libya
Austria
India
Italy
Denmark
Ukraine
Canada
Azerbaijan
Serbia
Turkey
ElSalvador
Morocco
Germany
Philippines
Hungary
Nepal
Jordan
Bulgaria
Venezuela
Poland
Slovakia
Bangladesh
Tunisia
Uzbekistan
Finland
Ghana
Greece
Pakistan
Algeria
Afghanistan
Tajikistan
Indonesia
Zambia
USA
None
1 in 100
1 in 50
1 in 33
1 in 25
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totalcasestodate
Worldwide cases
Excludes countries with population < 5,000,000
2020-10-08 Summary: 9
Average new cases over past 7 days
Israel
CzechRepublic
Argentina
Spain
Netherlands
Belgium
France
UnitedKingdom
Jordan
Colombia
USA
Brazil
Iraq
Slovakia
Paraguay
Libya
Austria
Peru
Chile
Ukraine
Romania
Hungary
Tunisia
Switzerland
Honduras
Nepal
Portugal
Denmark
Russia
Mexico
Morocco
Ecuador
India
Canada
Sweden
Iran
Poland
DominicanRepublic
Italy
Guatemala
Belarus
Bolivia
Bulgaria
Kyrgyzstan
Greece
SouthAfrica
Germany
Venezuela
Finland
Philippines
Myanmar
Turkey
Indonesia
SaudiArabia
Azerbaijan
Uzbekistan
Malaysia
ElSalvador
Serbia
Ethiopia
Bangladesh
Angola
SriLanka
Tajikistan
Mozambique
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagecases/day
Average new cases over past 7 days
Excludes countries with population < 5,000,000
2020-10-08 Summary: 10
Worldwide deaths
USA
Brazil
India
Mexico
UnitedKingdom
Italy
Peru
Spain
France
Iran
Colombia
Argentina
Russia
SouthAfrica
Chile
Ecuador
Indonesia
Belgium
Iraq
Canada
Germany
Turkey
Bolivia
Netherlands
Pakistan
Egypt
Philippines
Sweden
Bangladesh
Romania
SaudiArabia
China
Ukraine
Guatemala
Poland
Honduras
Morocco
DominicanRepublic
Switzerland
Portugal
Israel
Algeria
Kazakhstan
Japan
Afghanistan
Ethiopia
Nigeria
Kyrgyzstan
Paraguay
Australia
Hungary
Belarus
Bulgaria
ElSalvador
Sudan
Austria
CzechRepublic
Serbia
Kenya
Venezuela
Denmark
Libya
Azerbaijan
Yemen
Nepal
USA
0
50,000
100,000
150,000
200,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-10-08 Summary: 11
Worldwide deaths
Peru
Belgium
Bolivia
Ecuador
Spain
Chile
Brazil
Mexico
UnitedKingdom
USA
Sweden
Italy
Colombia
Argentina
France
Iran
Netherlands
SouthAfrica
Honduras
Iraq
Canada
Switzerland
Israel
Guatemala
Romania
DominicanRepublic
Kyrgyzstan
Portugal
SaudiArabia
Russia
Paraguay
ElSalvador
Bulgaria
Denmark
Germany
Kazakhstan
Turkey
Ukraine
Serbia
Austria
Libya
Belarus
India
Hungary
CzechRepublic
Azerbaijan
Poland
Egypt
Morocco
Finland
Philippines
Algeria
Afghanistan
Indonesia
Australia
Greece
Pakistan
Bangladesh
Tunisia
Sudan
Zambia
Nicaragua
Haiti
Venezuela
Yemen
USA
None
1 in 5,000
1 in 2,500
1 in 1,667
1 in 1,250
1 in 1,000
1 in 833
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Totaldeathstodate
Worldwide deaths
Excludes countries with population < 5,000,000
2020-10-08 Summary: 12
Average daily deaths over past 7 days
Argentina
Mexico
Israel
Colombia
Ecuador
Spain
Brazil
Bolivia
Iran
Chile
Paraguay
Peru
CzechRepublic
Romania
Honduras
USA
Iraq
Hungary
Ukraine
SouthAfrica
Jordan
Tunisia
Libya
Belgium
Russia
France
Bulgaria
Morocco
Poland
Netherlands
Canada
UnitedKingdom
Guatemala
SaudiArabia
Portugal
India
Turkey
DominicanRepublic
Philippines
Belarus
ElSalvador
Myanmar
Austria
Indonesia
Greece
Italy
Nepal
Angola
Denmark
Venezuela
Slovakia
Switzerland
Azerbaijan
Bangladesh
Kazakhstan
Algeria
Serbia
Germany
Egypt
Kenya
Kyrgyzstan
Uzbekistan
Ethiopia
Syria
Australia
USA
None
1 in 200,000
1 in 100,000
1 in 66,667
1 in 50,000
1 6 11 16 21 26 31 36 41 46 51 56 61 66
Rank
Averagedeaths/day
Average daily deaths over past 7 days
Excludes countries with population < 5,000,000
2020-10-08 Summary: 13
Mortality Trends
0
2
4
6
8
10
12
14
USCaseRateMortality
Mortality Type:
13 day rolling median
Cumulative
Daily Raw
Daily vs. Cumulative US Case Rate Mortality
Last week excluded because deaths are often backdated
2020-10-08 Summary: 14
Change in New Cases per Day
Daily cases are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
Daily cases by state as of 2020-10-08
2020-10-08 Summary: 15
Cases as a Percent of Peak Cases
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Cases as a Percent of Peak Cases
2020-10-08 Summary: 16
Change in Deaths per Day
Daily deaths are:
Increasing > +3%
Increasing between +1% and +3%
No Change (-1% to +1%)
Decreasing between -1% and -3%
Decreasing > -3%
Daily deaths by state as of 2020-10-08
2020-10-08 Summary: 17
Deaths as a Percent of Peak Deaths
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
0
25
50
75
100
PercentofPeak
Daily Deaths as a Percent of Peak Deaths
2020-10-08 Summary: 18
cases vs. change in deaths over last 14
days
AL
AKAZ
AR
CA
CO CT
DE
DC
FL
GA
HI ID
IL
IN
IA
KS
KY
LA
ME
MD
MA
MI
MN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RI
SC
SD
TN
TX
UT
VT
VA
WA
WV
WI
WY
-6
-3
0
3
6
-6 -3 0 3 6
Change in cases (%/day)
Changeindeaths(%/day)
Change in cases vs. change in deaths over last 14 days as of 2020-10-08
Size is proportional total cases per capita
2020-10-08 Summary: 19
Total US COVID-19 Cases
California
Texas
Florida
NewYork
Georgia
Illinois
NorthCarolina
Arizona
NewJersey
Tennessee
Pennsylvania
Louisiana
Ohio
Alabama
SouthCarolina
Virginia
Michigan
Wisconsin
Missouri
Massachusetts
Maryland
Indiana
Minnesota
Mississippi
Iowa
Oklahoma
Washington
Arkansas
Nevada
Utah
Kentucky
Colorado
Kansas
Connecticut
Nebraska
Idaho
Oregon
NewMexico
SouthDakota
RhodeIsland
NorthDakota
Delaware
WestVirginia
Montana
DistrictofColumbia
Hawaii
Alaska
NewHampshire
Wyoming
Maine
Vermont
0
250,000
500,000
750,000
1 6 11 16 21 26 31 36 41 46 51
Rank
Totalcases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.64, p governor: 0.98. NB: association != causation.
2020-10-08 Summary: 20
Total US COVID-19 Cases
Louisiana
Mississippi
Florida
Alabama
NorthDakota
Georgia
Arizona
Tennessee
Iowa
SouthCarolina
Arkansas
SouthDakota
Texas
Nevada
Idaho
Nebraska
Utah
Illinois
RhodeIsland
NewYork
Oklahoma
Wisconsin
NewJersey
Missouri
DistrictofColumbia
Delaware
Kansas
California
Maryland
NorthCarolina
Massachusetts
Indiana
Minnesota
Virginia
Kentucky
Connecticut
Montana
NewMexico
Michigan
Ohio
Pennsylvania
Colorado
Alaska
Washington
Wyoming
WestVirginia
Hawaii
Oregon
NewHampshire
Maine
Vermont
None
1 in 100
1 in 50
1 in 33
1 in 25
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalCases
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Cases
p masks as of July 20, 2020: 0.04, p governor: 0.016. NB: association != causation.
2020-10-08 Summary: 21
Average US COVID-19 cases over the past
7 days
NorthDakota
SouthDakota
Wisconsin
Montana
Utah
Idaho
Nebraska
Iowa
Oklahoma
Arkansas
Kentucky
Tennessee
Wyoming
Missouri
Alabama
Alaska
Kansas
Mississippi
Minnesota
Indiana
Illinois
Texas
Nevada
NorthCarolina
SouthCarolina
RhodeIsland
NewMexico
Delaware
Louisiana
Georgia
Colorado
Florida
Ohio
Michigan
WestVirginia
Maryland
Virginia
Massachusetts
California
Pennsylvania
Arizona
NewJersey
Connecticut
Oregon
Washington
NewYork
Hawaii
DistrictofColumbia
NewHampshire
Maine
Vermont
None
1 in 10,000
1 in 5,000
1 in 3,333
1 in 2,500
1 in 2,000
1 in 1,667
1 6 11 16 21 26 31 36 41 46 51
Rank
NewCases/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 cases over the past 7 days
p masks as of July 20, 2020: 0.002, p governor: 0.015. NB: association != causation.
2020-10-08 Summary: 22
Total US COVID-19 Deaths
NewYork
Texas
California
NewJersey
Florida
Massachusetts
Illinois
Pennsylvania
Georgia
Michigan
Arizona
Louisiana
Ohio
Connecticut
Maryland
Indiana
NorthCarolina
SouthCarolina
Virginia
Mississippi
Tennessee
Alabama
Missouri
Washington
Minnesota
Colorado
Nevada
Arkansas
Iowa
Wisconsin
Kentucky
RhodeIsland
Oklahoma
NewMexico
Kansas
Delaware
DistrictofColumbia
Oregon
Nebraska
Idaho
Utah
NewHampshire
WestVirginia
NorthDakota
SouthDakota
Montana
Hawaii
Maine
Alaska
Vermont
Wyoming
0
10,000
20,000
30,000
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.082, p governor: 0.47. NB: association != causation.
2020-10-08 Summary: 23
Total US COVID-19 Deaths
NewJersey
NewYork
Massachusetts
Connecticut
Louisiana
RhodeIsland
Mississippi
DistrictofColumbia
Arizona
Illinois
Michigan
Florida
Georgia
SouthCarolina
Delaware
Maryland
Pennsylvania
Texas
Indiana
Nevada
Alabama
Arkansas
Iowa
NewMexico
Ohio
California
NorthDakota
Tennessee
Virginia
Minnesota
Missouri
Colorado
NorthCarolina
NewHampshire
SouthDakota
Washington
Idaho
Kentucky
Oklahoma
Nebraska
Kansas
Wisconsin
WestVirginia
Montana
Utah
Oregon
Hawaii
Maine
Vermont
Wyoming
Alaska
None
1 in 2,000
1 in 1,000
1 in 667
1 in 500
1 6 11 16 21 26 31 36 41 46 51
Rank
TotalDeaths
Masks
No
Yes
Governor
aa
Democratic
Republican
Total US COVID-19 Deaths
p masks as of July 20, 2020: 0.061, p governor: 0.52. NB: association != causation.
2020-10-08 Summary: 24
Average US COVID-19 deaths over the past
7 days
NorthDakota
Arkansas
SouthDakota
Florida
Tennessee
Mississippi
Missouri
SouthCarolina
Texas
Georgia
Iowa
Louisiana
Kansas
Hawaii
Idaho
Wisconsin
Massachusetts
Illinois
NorthCarolina
Alabama
Indiana
Ohio
Nebraska
Montana
Minnesota
Oklahoma
Delaware
California
Nevada
WestVirginia
Arizona
Virginia
RhodeIsland
Utah
Kentucky
Pennsylvania
NewMexico
Michigan
DistrictofColumbia
Washington
Colorado
Oregon
Wyoming
NewHampshire
Connecticut
Maryland
NewYork
Alaska
NewJersey
Maine
Vermont
None
1 in 500,000
1 in 250,000
1 in 166,667
1 in 125,000
1 in 100,000
1 in 83,333
1 6 11 16 21 26 31 36 41 46 51
Rank
Deaths/Day
Masks
No
Yes
Governor
aa
Democratic
Republican
Average US COVID-19 deaths over the past 7 days
p masks as of July 20, 2020: 0.013, p governor: 0.0083. NB: association != causation.
2020-10-08 Summary: 25
Daily testing trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Dailytestingfrommintomax
Daily testing trends from min to max
Line = Friedman's supersmoother
2020-10-08 Summary: 26
Change in daily tests over past 14 days
Mississippi
SouthDakota
Alaska
Connecticut
Kansas
Nebraska
Montana
California
NewYork
Delaware
Louisiana
Tennessee
Oklahoma
Wyoming
Ohio
NorthDakota
RhodeIsland
Pennsylvania
NewMexico
Wisconsin
WestVirginia
Indiana
Michigan
Florida
Idaho
Massachusetts
DistrictofColumbia
Colorado
Arizona
Illinois
NewJersey
Maryland
Minnesota
Utah
SouthCarolina
NorthCarolina
Georgia
Hawaii
Washington
Iowa
Kentucky
Missouri
Maine
Virginia
Oregon
Alabama
Texas
Nevada
Vermont
Arkansas
NewHampshire
-5.0
0.0
5.0
10.0
15.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeindailytests(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in daily tests over past 14 days
p masks as of July 20, 2020: 0.15, p governor: 0.77. NB: association != causation.
2020-10-08 Summary: 27
Percent Tested
Alaska
NewYork
DistrictofColumbia
Louisiana
Connecticut
Illinois
NewMexico
Tennessee
NewJersey
California
Michigan
Arkansas
Maine
Montana
Massachusetts
RhodeIsland
WestVirginia
Kentucky
NorthDakota
Oklahoma
NorthCarolina
Delaware
Ohio
Georgia
Wisconsin
Maryland
Utah
SouthCarolina
Mississippi
Vermont
Minnesota
Washington
Virginia
Florida
Iowa
Nebraska
Alabama
SouthDakota
Nevada
Texas
Missouri
Hawaii
Indiana
NewHampshire
Arizona
Kansas
Wyoming
Idaho
Oregon
Colorado
Pennsylvania
0
20
40
60
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentTested
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent Tested
p masks as of July 20, 2020: 0.023, p governor: 0.088. NB: association != causation.
2020-10-08 Summary: 28
Percent of Positive COVID Tests
NorthDakota
Idaho
SouthDakota
Wisconsin
Iowa
Nevada
Missouri
Wyoming
Utah
Indiana
Nebraska
Kansas
Alabama
Florida
Montana
Oklahoma
Texas
Minnesota
Pennsylvania
Arkansas
Delaware
Kentucky
Colorado
Georgia
Arizona
Mississippi
Hawaii
Tennessee
RhodeIsland
Oregon
Maryland
NorthCarolina
SouthCarolina
Virginia
NewMexico
Massachusetts
Louisiana
Washington
Illinois
NewHampshire
WestVirginia
Michigan
Ohio
Alaska
California
NewJersey
Vermont
DistrictofColumbia
NewYork
Connecticut
Maine
0
10
20
30
1 6 11 16 21 26 31 36 41 46 51
Rank
PercentofPositiveTests
Masks
No
Yes
Governor
aa
Democratic
Republican
Percent of Positive COVID Tests
p masks as of July 20, 2020: 0.002, p governor: 0.021. NB: association != causation.
2020-10-08 Summary: 29
Percent Positive Trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
1
10
100
PercentPositive(logscale)
Percent Positive Trends
2020-10-08 Summary: 30
tests vs. change in positive tests over last 14
days
AL
AK
AZ
AR
CA
CO CT
DE
DC
FL
GA
HI
ID
IL
IN
IA KS
KY
LA
ME
MD
MA MIMN
MS
MO
MT
NE
NV
NH
NJ
NM
NY
NC
ND
OH
OK
OR
PA
RISC
SD
TNTX
UT
VT
VA
WA
WV
WI
WY
-10
-5
0
5
10
-6 -3 0 3 6
Change in tests (%/day)
Changeinpositivetests(%/day)
Change in tests vs. change in positive tests over last 14 days as of 2020-10-08
Size is proportional daily deaths per capita over the past 7 days
2020-10-08 Summary: 31
Current hospitalizations as a percent of peak
since FebruaryArkansas
Iowa
Missouri
Montana
NorthDakota
Oklahoma
SouthDakota
Wisconsin
Wyoming
Nebraska
WestVirginia
Kentucky
Kansas
Alaska
NorthCarolina
Utah
Tennessee
Ohio
Indiana
Idaho
Virginia
Oregon
Minnesota
Georgia
NewMexico
Alabama
Mississippi
Nevada
SouthCarolina
Hawaii
Washington
California
Illinois
Texas
Colorado
RhodeIsland
Delaware
Louisiana
Pennsylvania
DistrictofColumbia
Maryland
Florida
Arizona
Michigan
Maine
NewHampshire
Massachusetts
NewJersey
Connecticut
NewYork
Vermont
0
30
60
90
1 6 11 16 21 26 31 36 41 46 51
Rank
Hospitalizations(%ofpeak)
Masks
No
Yes
Governor
aa
Democratic
Republican
Current hospitalizations as a percent of peak since February
p masks as of July 20, 2020: 0.006, p governor: 0.042. NB: association != causation.
2020-10-08 Summary: 32
Hospitalizations trends
HI TX FL
OK LA MS AL GA
AZ NM KS AR TN NC SC DC
CA UT CO NE MO KY WV VA MD DE
OR NV WY SD IA IN OH PA NJ CT RI
WA ID MT ND MN IL MI NY MA
WI VT NH
AK ME
min
max
min
max
min
max
min
max
min
max
min
max
min
max
min
max
Hospitalizationsfrommintomax
Hospitalizations trends from min to max
2020-10-08 Summary: 33
Change in hospitalizations over past 14
days
Wyoming
Connecticut
Delaware
Montana
Wisconsin
NewMexico
Pennsylvania
NewYork
NewJersey
Tennessee
Colorado
Iowa
Michigan
Massachusetts
SouthDakota
Arizona
NewHampshire
Ohio
Utah
Indiana
Oklahoma
NorthDakota
Nebraska
Minnesota
Kentucky
Arkansas
Kansas
NorthCarolina
Idaho
Alabama
Texas
Missouri
Alaska
Maryland
Nevada
RhodeIsland
Illinois
DistrictofColumbia
Virginia
Florida
WestVirginia
Washington
California
Louisiana
Oregon
Georgia
Mississippi
Maine
SouthCarolina
Hawaii
Vermont
-10.0
-5.0
0.0
5.0
1 6 11 16 21 26 31 36 41 46 51
Rank
Changeinhospitalizations(%/day)
Masks
No
Yes
Governor
aa
Democratic
Republican
Change in hospitalizations over past 14 days
p masks as of July 20, 2020: 0.73, p governor: 0.7. NB: association != causation.
2020-10-08 Summary: 34
Change in New Cases per Day
Direction
Increasing > +2%
Increasing between +0.5% and +2%
No Change (-0.5% to +0.5%)
Decreasing between -0.5% and -2%
Decreasing > -2%
NA
Trends by county as of 2020-10-08
NA = Inadequate data
2020-10-08 Summary: 35

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COVID-19 Update (International): October 11, 2020COVID-19 Update (International): October 11, 2020
COVID-19 Update (International): October 11, 2020
 
COVID-19 Update (US States): October 10, 2020
COVID-19 Update (US States): October 10, 2020COVID-19 Update (US States): October 10, 2020
COVID-19 Update (US States): October 10, 2020
 
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COVID-19 Update (US Counties): October 10, 2020COVID-19 Update (US Counties): October 10, 2020
COVID-19 Update (US Counties): October 10, 2020
 
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COVID-19 Update (International): October 10, 2020COVID-19 Update (International): October 10, 2020
COVID-19 Update (International): October 10, 2020
 
COVID-19 Update (US States): October 9, 2020
COVID-19 Update (US States): October 9, 2020COVID-19 Update (US States): October 9, 2020
COVID-19 Update (US States): October 9, 2020
 
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COVID-19 Update (US Counties): October 9, 2020COVID-19 Update (US Counties): October 9, 2020
COVID-19 Update (US Counties): October 9, 2020
 
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COVID-19 Update (US States): October 8, 2020
COVID-19 Update (US States): October 8, 2020 COVID-19 Update (US States): October 8, 2020
COVID-19 Update (US States): October 8, 2020
 
COVID-19 Update (US Counties): October 8, 2020
COVID-19 Update (US Counties): October 8, 2020 COVID-19 Update (US Counties): October 8, 2020
COVID-19 Update (US Counties): October 8, 2020
 
COVID-19 Update (International): October 8, 2020
COVID-19 Update (International): October 8, 2020 COVID-19 Update (International): October 8, 2020
COVID-19 Update (International): October 8, 2020
 
COVID-19 Update (US States): October 7, 2020
COVID-19 Update (US States): October 7, 2020 COVID-19 Update (US States): October 7, 2020
COVID-19 Update (US States): October 7, 2020
 
COVID-19 Update (US Counties): October 7, 2020
COVID-19 Update (US Counties): October 7, 2020 COVID-19 Update (US Counties): October 7, 2020
COVID-19 Update (US Counties): October 7, 2020
 
COVID-19 Update (Summary): October 7, 2020
COVID-19 Update (Summary): October 7, 2020 COVID-19 Update (Summary): October 7, 2020
COVID-19 Update (Summary): October 7, 2020
 
COVID-19 Update (International): October 7, 2020
COVID-19 Update (International): October 7, 2020 COVID-19 Update (International): October 7, 2020
COVID-19 Update (International): October 7, 2020
 
COVID-19 Update (US States): October 6, 2020
COVID-19 Update (US States): October 6, 2020 COVID-19 Update (US States): October 6, 2020
COVID-19 Update (US States): October 6, 2020
 
COVID-19 Update (US Counties): October 6, 2020
COVID-19 Update (US Counties): October 6, 2020 COVID-19 Update (US Counties): October 6, 2020
COVID-19 Update (US Counties): October 6, 2020
 
COVID-19 Update (International): October 6, 2020
COVID-19 Update (International): October 6, 2020 COVID-19 Update (International): October 6, 2020
COVID-19 Update (International): October 6, 2020
 

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COVID-19 Update (Summary): October 8, 2020

  • 1. Caveats and Comments 1 Overview: This is my analysis, not Stanford’s. My goal is to understand the trajectory of COVID. It is not confidential and can be freely shared. The R program code is available at https://github.com/StevenLShafer/COVID19/. The daily analysis are available at https://1drv.ms/u/s!AuOyHP_aTIy7rowrt2AjGpWm_frnEQ?e=KBcNbh. You are welcome to use the R code on GitHub for any purpose. I am attempting to keep the analysis and commentary apolitical. I am now including partisan lean as a metric to help understand the epidemic. I occasionally point out misrepresentations by government officials. I occasionally point out where government recommendations have placed Americans at increasing risk. I try to provide a daily update in the morning, except Sundays. My analysis my be delayed by my clinical responsibilities as a Stanford anesthesiologist. There is a lot of information on the figures. If something isn’t clear, please see the explanation on slide 2. Data sources: • USA Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_US.csv • USA Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_US.csv • USA Testing and Hospitalization Data: https://raw.githubusercontent.com/COVID19Tracking/covid-tracking-data/master/data/states_daily_4pm_et.csv • Global Case Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv • Global Death Data: https://github.com/CSSEGISandData/COVID-19/raw/master/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv • Global Testing Data: https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/owid-covid-data.csv • Mobility Data: https://www.gstatic.com/covid19/mobility/Global_Mobility_Report.csv • Partisan Lean: MIT Election Data and Science Lab: https://doi.org/10.7910/DVN/VOQCHQ/HEIJCQ • Ensemble Model: https://github.com/reichlab/covid19-forecast-hub/raw/master/data-processed/COVIDhub-ensemble/2020-xx-xx-COVIDhub-ensemble.csv Models: 1. Future projections of case numbers are based on the Gompertz function (https://en.wikipedia.org/wiki/Gompertz_function): log 𝑐𝑢𝑚𝑢𝑙𝑎𝑡𝑖𝑣𝑒 𝑐𝑎𝑠𝑒𝑠 = 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 + 𝑚𝑎𝑥𝑖𝑚𝑢𝑚 𝑐𝑎𝑠𝑒𝑠 − 𝑐𝑢𝑟𝑟𝑒𝑛𝑡 𝑐𝑎𝑠𝑒𝑠 1 − 𝑒−𝑘 𝑡 . This is a naïve asymptotic model. k is the rate constant, such that log(2) / k = time to 50% rise. t is the number of days. Wikipedia The Gompertz function is estimated from the last 3 weeks of data for cumulative cases (red dots in the figures). Deaths are predicted from a log linear regression of deaths over the past 21 days. For the US, and individual states, I am also including the 98% prediction interval from the COVID-19 Forecast Hub (https://covid19forecasthub.org/). 2. The rate of change in daily cases and deaths is the slope of delta cases / day over the last 14 days, divided by the average number of cases. Locations The locations for the modeling are where Pamela and I have family and friends, locations of interest to friends and colleagues, or countries in the news (e.g., China, South Korea, Sweden, Brazil) or with significant economic impact on the United States (e.g., Japan, Canada, Mexico). Locations are easy to add. Stay safe, well, resilient, and kind. Steve Shafer steven.shafer@Stanford.edu
  • 2. 2,586,092 152,804 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Actual(points)/Predicted(line) Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-05-27 0 10,000 20,000 30,000 0 2,000 4,000 6,000 Cases/Day Deaths/Day Cases: 1,662,302 (32,123) -- Deaths: 98,220 (829) -- Case Mortality: 5.9% -- Daily Change in Cases: -0.5% Explanation of the Figures 2 Brown dots: cumulative tests Red dots: cumulative cases used to estimate Gompertz function, presently set to last 3 weeks Red line: predicted cumulative cases based on the Gompertz function estimated from the red dots Red number: total cases on June 30th, based on the Gompertz function estimated from the red dots Black number: total Deaths on July 31th, based on log-linear regression of the past 21 days Black line: predicted cumulative deaths, based on a log linear regression of deaths over past 21 days. Axis for deaths / day, usually 1/10th of the axis for cases / day on the left side of the figure. Green line: linear regression over 8 days, used to calculate percent increase / decrease (see below) Daily change in cases, calculated as the slope of the green line (above left) / number of new cases yesterday. Case mortality: cumulative deaths / cumulative cases. Cases / day calculated from cumulative cases used to estimate the Gompertz function Cases / day calculated from cumulative cases not used to estimate the Gompertz function Deaths / day, axis is on the left Blue line: today Blue dots: cumulative cases not used to estimate Gompertz function Cumulative cases (yesterday’s cases) and cumulative deaths (yesterday’s deaths) Axis for cases / day. Axis for deaths / day appears to the right. Geographic location Date of analysis, also shown as blue vertical line below Purple wedge: 98% ensemble prediction interval from COVID-19 Forecast Hub (USA and US States only)
  • 3. Worldwide 43,105,877 1,210,511 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Worldwide projection as of 2020-10-08 1 10 100 1,000 10,000 100,000 1,000,000 CasesandDeaths/Day Cases: 36,155,495 (352,460) -- Deaths: 1,055,667 (5,955) -- Case Mortality: 2.9% -- Daily Change: +0.9% Cases, +0.7% Deaths 2020-10-08 Summary: 3
  • 4. USA 8,505,703 231,248 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests USA projection as of 2020-10-08 Mother'sDay MemorialDay July4th July15,2020 LaborDay 1 10 100 1,000 10,000 100,000 CasesandDeaths/Day Cases: 7,549,682 (50,341) -- Deaths: 211,801 (915) -- Case Mortality: 2.8% -- Daily Change: +0.5% Cases, -0.9% Deaths 2020-10-08 Summary: 4
  • 5. Western Europe 3,953,629 169,278 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Belgium, France, Germany, Greece, Italy, Portugal, Spain, Netherlands, Luxembourg, and the UK (Population = 344MM) Western Europe projection as of 2020-10-08 1 10 100 1,000 10,000 100,000 CasesandDeaths/Day Cases: 2,978,217 (56,727) -- Deaths: 162,370 (321) -- Case Mortality: 5.5% -- Daily Change: +4.3% Cases, +1.7% Deaths 2020-10-08 Summary: 5
  • 6. Comparison of COVID-19 Cases & Deaths between US & Europe Cases Deaths 50,341 56,727 915 321 3 10 30 100 300 1,000 3,000 10,000 30,000 100,000 Date DailyCasesandDeaths Location USA (318MM) Western Europe (344MM) Log plot of 7 day average Comparison of COVID-19 Cases & Deaths between US & Europe The numbers on the right are yesterday's figures, and will differ a bit from the plotted rolling mean 2020-10-08 Summary: 6
  • 7. Non-authoritarian Asian ensemble 128,587 2,390 1 10 100 1,000 10,000 100,000 1,000,000 10,000,000 100,000,000 Cumulative Phase Pre-Model Modeled Deaths Tests Japan, South Korea, Thailand, and Vietnam (Population = 328 MM) Non-authoritarian Asian ensemble projection as of 2020-10-08 1 10 100 1,000 10,000 CasesandDeaths/Day Cases: 116,182 (576) -- Deaths: 2,135 (7) -- Case Mortality: 1.8% -- Daily Change: +0.1% Cases, -2.2% Deaths 2020-10-08 Summary: 7
  • 10. Average new cases over past 7 days Israel CzechRepublic Argentina Spain Netherlands Belgium France UnitedKingdom Jordan Colombia USA Brazil Iraq Slovakia Paraguay Libya Austria Peru Chile Ukraine Romania Hungary Tunisia Switzerland Honduras Nepal Portugal Denmark Russia Mexico Morocco Ecuador India Canada Sweden Iran Poland DominicanRepublic Italy Guatemala Belarus Bolivia Bulgaria Kyrgyzstan Greece SouthAfrica Germany Venezuela Finland Philippines Myanmar Turkey Indonesia SaudiArabia Azerbaijan Uzbekistan Malaysia ElSalvador Serbia Ethiopia Bangladesh Angola SriLanka Tajikistan Mozambique USA None 1 in 5,000 1 in 2,500 1 in 1,667 1 in 1,250 1 in 1,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagecases/day Average new cases over past 7 days Excludes countries with population < 5,000,000 2020-10-08 Summary: 10
  • 13. Average daily deaths over past 7 days Argentina Mexico Israel Colombia Ecuador Spain Brazil Bolivia Iran Chile Paraguay Peru CzechRepublic Romania Honduras USA Iraq Hungary Ukraine SouthAfrica Jordan Tunisia Libya Belgium Russia France Bulgaria Morocco Poland Netherlands Canada UnitedKingdom Guatemala SaudiArabia Portugal India Turkey DominicanRepublic Philippines Belarus ElSalvador Myanmar Austria Indonesia Greece Italy Nepal Angola Denmark Venezuela Slovakia Switzerland Azerbaijan Bangladesh Kazakhstan Algeria Serbia Germany Egypt Kenya Kyrgyzstan Uzbekistan Ethiopia Syria Australia USA None 1 in 200,000 1 in 100,000 1 in 66,667 1 in 50,000 1 6 11 16 21 26 31 36 41 46 51 56 61 66 Rank Averagedeaths/day Average daily deaths over past 7 days Excludes countries with population < 5,000,000 2020-10-08 Summary: 13
  • 14. Mortality Trends 0 2 4 6 8 10 12 14 USCaseRateMortality Mortality Type: 13 day rolling median Cumulative Daily Raw Daily vs. Cumulative US Case Rate Mortality Last week excluded because deaths are often backdated 2020-10-08 Summary: 14
  • 15. Change in New Cases per Day Daily cases are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% Daily cases by state as of 2020-10-08 2020-10-08 Summary: 15
  • 16. Cases as a Percent of Peak Cases HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Cases as a Percent of Peak Cases 2020-10-08 Summary: 16
  • 17. Change in Deaths per Day Daily deaths are: Increasing > +3% Increasing between +1% and +3% No Change (-1% to +1%) Decreasing between -1% and -3% Decreasing > -3% Daily deaths by state as of 2020-10-08 2020-10-08 Summary: 17
  • 18. Deaths as a Percent of Peak Deaths HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 0 25 50 75 100 PercentofPeak Daily Deaths as a Percent of Peak Deaths 2020-10-08 Summary: 18
  • 19. cases vs. change in deaths over last 14 days AL AKAZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MI MN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RI SC SD TN TX UT VT VA WA WV WI WY -6 -3 0 3 6 -6 -3 0 3 6 Change in cases (%/day) Changeindeaths(%/day) Change in cases vs. change in deaths over last 14 days as of 2020-10-08 Size is proportional total cases per capita 2020-10-08 Summary: 19
  • 20. Total US COVID-19 Cases California Texas Florida NewYork Georgia Illinois NorthCarolina Arizona NewJersey Tennessee Pennsylvania Louisiana Ohio Alabama SouthCarolina Virginia Michigan Wisconsin Missouri Massachusetts Maryland Indiana Minnesota Mississippi Iowa Oklahoma Washington Arkansas Nevada Utah Kentucky Colorado Kansas Connecticut Nebraska Idaho Oregon NewMexico SouthDakota RhodeIsland NorthDakota Delaware WestVirginia Montana DistrictofColumbia Hawaii Alaska NewHampshire Wyoming Maine Vermont 0 250,000 500,000 750,000 1 6 11 16 21 26 31 36 41 46 51 Rank Totalcases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.64, p governor: 0.98. NB: association != causation. 2020-10-08 Summary: 20
  • 21. Total US COVID-19 Cases Louisiana Mississippi Florida Alabama NorthDakota Georgia Arizona Tennessee Iowa SouthCarolina Arkansas SouthDakota Texas Nevada Idaho Nebraska Utah Illinois RhodeIsland NewYork Oklahoma Wisconsin NewJersey Missouri DistrictofColumbia Delaware Kansas California Maryland NorthCarolina Massachusetts Indiana Minnesota Virginia Kentucky Connecticut Montana NewMexico Michigan Ohio Pennsylvania Colorado Alaska Washington Wyoming WestVirginia Hawaii Oregon NewHampshire Maine Vermont None 1 in 100 1 in 50 1 in 33 1 in 25 1 6 11 16 21 26 31 36 41 46 51 Rank TotalCases Masks No Yes Governor aa Democratic Republican Total US COVID-19 Cases p masks as of July 20, 2020: 0.04, p governor: 0.016. NB: association != causation. 2020-10-08 Summary: 21
  • 22. Average US COVID-19 cases over the past 7 days NorthDakota SouthDakota Wisconsin Montana Utah Idaho Nebraska Iowa Oklahoma Arkansas Kentucky Tennessee Wyoming Missouri Alabama Alaska Kansas Mississippi Minnesota Indiana Illinois Texas Nevada NorthCarolina SouthCarolina RhodeIsland NewMexico Delaware Louisiana Georgia Colorado Florida Ohio Michigan WestVirginia Maryland Virginia Massachusetts California Pennsylvania Arizona NewJersey Connecticut Oregon Washington NewYork Hawaii DistrictofColumbia NewHampshire Maine Vermont None 1 in 10,000 1 in 5,000 1 in 3,333 1 in 2,500 1 in 2,000 1 in 1,667 1 6 11 16 21 26 31 36 41 46 51 Rank NewCases/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 cases over the past 7 days p masks as of July 20, 2020: 0.002, p governor: 0.015. NB: association != causation. 2020-10-08 Summary: 22
  • 23. Total US COVID-19 Deaths NewYork Texas California NewJersey Florida Massachusetts Illinois Pennsylvania Georgia Michigan Arizona Louisiana Ohio Connecticut Maryland Indiana NorthCarolina SouthCarolina Virginia Mississippi Tennessee Alabama Missouri Washington Minnesota Colorado Nevada Arkansas Iowa Wisconsin Kentucky RhodeIsland Oklahoma NewMexico Kansas Delaware DistrictofColumbia Oregon Nebraska Idaho Utah NewHampshire WestVirginia NorthDakota SouthDakota Montana Hawaii Maine Alaska Vermont Wyoming 0 10,000 20,000 30,000 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.082, p governor: 0.47. NB: association != causation. 2020-10-08 Summary: 23
  • 24. Total US COVID-19 Deaths NewJersey NewYork Massachusetts Connecticut Louisiana RhodeIsland Mississippi DistrictofColumbia Arizona Illinois Michigan Florida Georgia SouthCarolina Delaware Maryland Pennsylvania Texas Indiana Nevada Alabama Arkansas Iowa NewMexico Ohio California NorthDakota Tennessee Virginia Minnesota Missouri Colorado NorthCarolina NewHampshire SouthDakota Washington Idaho Kentucky Oklahoma Nebraska Kansas Wisconsin WestVirginia Montana Utah Oregon Hawaii Maine Vermont Wyoming Alaska None 1 in 2,000 1 in 1,000 1 in 667 1 in 500 1 6 11 16 21 26 31 36 41 46 51 Rank TotalDeaths Masks No Yes Governor aa Democratic Republican Total US COVID-19 Deaths p masks as of July 20, 2020: 0.061, p governor: 0.52. NB: association != causation. 2020-10-08 Summary: 24
  • 25. Average US COVID-19 deaths over the past 7 days NorthDakota Arkansas SouthDakota Florida Tennessee Mississippi Missouri SouthCarolina Texas Georgia Iowa Louisiana Kansas Hawaii Idaho Wisconsin Massachusetts Illinois NorthCarolina Alabama Indiana Ohio Nebraska Montana Minnesota Oklahoma Delaware California Nevada WestVirginia Arizona Virginia RhodeIsland Utah Kentucky Pennsylvania NewMexico Michigan DistrictofColumbia Washington Colorado Oregon Wyoming NewHampshire Connecticut Maryland NewYork Alaska NewJersey Maine Vermont None 1 in 500,000 1 in 250,000 1 in 166,667 1 in 125,000 1 in 100,000 1 in 83,333 1 6 11 16 21 26 31 36 41 46 51 Rank Deaths/Day Masks No Yes Governor aa Democratic Republican Average US COVID-19 deaths over the past 7 days p masks as of July 20, 2020: 0.013, p governor: 0.0083. NB: association != causation. 2020-10-08 Summary: 25
  • 26. Daily testing trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Dailytestingfrommintomax Daily testing trends from min to max Line = Friedman's supersmoother 2020-10-08 Summary: 26
  • 27. Change in daily tests over past 14 days Mississippi SouthDakota Alaska Connecticut Kansas Nebraska Montana California NewYork Delaware Louisiana Tennessee Oklahoma Wyoming Ohio NorthDakota RhodeIsland Pennsylvania NewMexico Wisconsin WestVirginia Indiana Michigan Florida Idaho Massachusetts DistrictofColumbia Colorado Arizona Illinois NewJersey Maryland Minnesota Utah SouthCarolina NorthCarolina Georgia Hawaii Washington Iowa Kentucky Missouri Maine Virginia Oregon Alabama Texas Nevada Vermont Arkansas NewHampshire -5.0 0.0 5.0 10.0 15.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeindailytests(%/day) Masks No Yes Governor aa Democratic Republican Change in daily tests over past 14 days p masks as of July 20, 2020: 0.15, p governor: 0.77. NB: association != causation. 2020-10-08 Summary: 27
  • 29. Percent of Positive COVID Tests NorthDakota Idaho SouthDakota Wisconsin Iowa Nevada Missouri Wyoming Utah Indiana Nebraska Kansas Alabama Florida Montana Oklahoma Texas Minnesota Pennsylvania Arkansas Delaware Kentucky Colorado Georgia Arizona Mississippi Hawaii Tennessee RhodeIsland Oregon Maryland NorthCarolina SouthCarolina Virginia NewMexico Massachusetts Louisiana Washington Illinois NewHampshire WestVirginia Michigan Ohio Alaska California NewJersey Vermont DistrictofColumbia NewYork Connecticut Maine 0 10 20 30 1 6 11 16 21 26 31 36 41 46 51 Rank PercentofPositiveTests Masks No Yes Governor aa Democratic Republican Percent of Positive COVID Tests p masks as of July 20, 2020: 0.002, p governor: 0.021. NB: association != causation. 2020-10-08 Summary: 29
  • 30. Percent Positive Trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 1 10 100 PercentPositive(logscale) Percent Positive Trends 2020-10-08 Summary: 30
  • 31. tests vs. change in positive tests over last 14 days AL AK AZ AR CA CO CT DE DC FL GA HI ID IL IN IA KS KY LA ME MD MA MIMN MS MO MT NE NV NH NJ NM NY NC ND OH OK OR PA RISC SD TNTX UT VT VA WA WV WI WY -10 -5 0 5 10 -6 -3 0 3 6 Change in tests (%/day) Changeinpositivetests(%/day) Change in tests vs. change in positive tests over last 14 days as of 2020-10-08 Size is proportional daily deaths per capita over the past 7 days 2020-10-08 Summary: 31
  • 32. Current hospitalizations as a percent of peak since FebruaryArkansas Iowa Missouri Montana NorthDakota Oklahoma SouthDakota Wisconsin Wyoming Nebraska WestVirginia Kentucky Kansas Alaska NorthCarolina Utah Tennessee Ohio Indiana Idaho Virginia Oregon Minnesota Georgia NewMexico Alabama Mississippi Nevada SouthCarolina Hawaii Washington California Illinois Texas Colorado RhodeIsland Delaware Louisiana Pennsylvania DistrictofColumbia Maryland Florida Arizona Michigan Maine NewHampshire Massachusetts NewJersey Connecticut NewYork Vermont 0 30 60 90 1 6 11 16 21 26 31 36 41 46 51 Rank Hospitalizations(%ofpeak) Masks No Yes Governor aa Democratic Republican Current hospitalizations as a percent of peak since February p masks as of July 20, 2020: 0.006, p governor: 0.042. NB: association != causation. 2020-10-08 Summary: 32
  • 33. Hospitalizations trends HI TX FL OK LA MS AL GA AZ NM KS AR TN NC SC DC CA UT CO NE MO KY WV VA MD DE OR NV WY SD IA IN OH PA NJ CT RI WA ID MT ND MN IL MI NY MA WI VT NH AK ME min max min max min max min max min max min max min max min max Hospitalizationsfrommintomax Hospitalizations trends from min to max 2020-10-08 Summary: 33
  • 34. Change in hospitalizations over past 14 days Wyoming Connecticut Delaware Montana Wisconsin NewMexico Pennsylvania NewYork NewJersey Tennessee Colorado Iowa Michigan Massachusetts SouthDakota Arizona NewHampshire Ohio Utah Indiana Oklahoma NorthDakota Nebraska Minnesota Kentucky Arkansas Kansas NorthCarolina Idaho Alabama Texas Missouri Alaska Maryland Nevada RhodeIsland Illinois DistrictofColumbia Virginia Florida WestVirginia Washington California Louisiana Oregon Georgia Mississippi Maine SouthCarolina Hawaii Vermont -10.0 -5.0 0.0 5.0 1 6 11 16 21 26 31 36 41 46 51 Rank Changeinhospitalizations(%/day) Masks No Yes Governor aa Democratic Republican Change in hospitalizations over past 14 days p masks as of July 20, 2020: 0.73, p governor: 0.7. NB: association != causation. 2020-10-08 Summary: 34
  • 35. Change in New Cases per Day Direction Increasing > +2% Increasing between +0.5% and +2% No Change (-0.5% to +0.5%) Decreasing between -0.5% and -2% Decreasing > -2% NA Trends by county as of 2020-10-08 NA = Inadequate data 2020-10-08 Summary: 35