This document proposes a two-dimensional location-based channel estimation method for massive full-dimensional MIMO systems. It uses an intra-cell pilot reuse scheme where users with the same pilots can be distinguished by their unique azimuth and elevation angles of arrival. The method applies a 2D FFT to the pilot-aided channel estimates followed by a 2D window function in the angle domain to isolate the different users. Simulation results show the proposed method outperforms conventional pilot-aided estimation and that 3D MIMO can improve sum capacity and serve more users compared to traditional MIMO systems.