If you want to know more, please visit https://www.creative-proteomics.com/services/short-chain-fatty-acids-analysis-service.htm. Short chain fatty acids (SCFAs) are defined as fatty acids with two to six carbon atoms. SCFAs have a wide range of metabolic effects. And SCFA profiling has been a major topic in gut bacteria studies.
Why is the gut our second brain? Robert-J M BrummerValio
Robert-J M Brummer MD PhD
Professor of Gastroenterology and Clinical Nutrition, director Nutrition-Gut-Brain Interactions Research Centre
Pro-Vice-Chancellor, Örebro University, Sweden
Helsinki, June 15, 2016
Denaturation of protein involves the disruption and possible destruction of structures. Since denaturation reactions are not strong enough to break the peptide bond, the primary structure remains the same after a denaturation process. Denaturation disrupts the normal alpha –helix and beta sheets in a protein and uncoils it into a random shape.
Why is the gut our second brain? Robert-J M BrummerValio
Robert-J M Brummer MD PhD
Professor of Gastroenterology and Clinical Nutrition, director Nutrition-Gut-Brain Interactions Research Centre
Pro-Vice-Chancellor, Örebro University, Sweden
Helsinki, June 15, 2016
Denaturation of protein involves the disruption and possible destruction of structures. Since denaturation reactions are not strong enough to break the peptide bond, the primary structure remains the same after a denaturation process. Denaturation disrupts the normal alpha –helix and beta sheets in a protein and uncoils it into a random shape.
Foodomics - the application of advanced omics technologies to understand the molecular and genetics level in food and correleate with nutrition and authenticationn purposes. (getnet)
Tertiary Structure basically of Hydrophobic interactions, (interactions in side chains), hydrogen bonding, salt bridges, Vander Waals interactions.
e.g. Globular proteins & Fibrous Proteins
Structure function relationship of clinically important peptidesrohini sane
A comprehensive presentation on Structure-function relationship of clinically important Peptides for MBBS , BDS, B Pharm & Biotechnology students to facilitate self- study.
Foodomics - the application of advanced omics technologies to understand the molecular and genetics level in food and correleate with nutrition and authenticationn purposes. (getnet)
Tertiary Structure basically of Hydrophobic interactions, (interactions in side chains), hydrogen bonding, salt bridges, Vander Waals interactions.
e.g. Globular proteins & Fibrous Proteins
Structure function relationship of clinically important peptidesrohini sane
A comprehensive presentation on Structure-function relationship of clinically important Peptides for MBBS , BDS, B Pharm & Biotechnology students to facilitate self- study.
Cell migration, a key property of live cells, is the process by which cells move from one location to another. There are numerous ways to study cell migrations. Creative Proteomics offers tailored cell migration services and powerful analysis for your research.
https://www.creative-proteomics.com/services/cell-migration-assay.htm
A brief introfuction of label-free protein quantification methodsCreative Proteomics
If you want to know more about our services, please visit https://www.creative-proteomics.com/services/label-free-quantification.htm.
Label-free protein quantification is a mass spectrometry-based method for identifying and quantifying relative changes in two or more biological samples instead of using a stable isotope-containing compound to label proteins.
If you want to know more, please visit https://www.creative-proteomics.com/s...
Stable isotope labeling using amino acids in cell culture (SILAC) is a powerful method based on mass spectrometry that identifies and quantifies relative differential changes in protein abundance. First used in quantitative proteomics in 2002, it provides accurate relative quantification without any chemical derivatization or manipulation.
Mass Spectrometry-Based Proteomics Quantification: iTRAQ Creative Proteomics
For more information, please visit: https://www.creative-proteomics.com/services/itraq-based-proteomics-analysis.htm
iTRAQ (isobaric tag for relative and absolute quantitation), is an isobaric labeling method to determine the amount of proteins from different sources in just one single experiment by mass spectrometry, which was developed by Applied Biosystems Incorporation in 2004.
For more information, you can visit https://www.creative-proteomics.com/services/protein-post-translational-modification-analysis.htm. In this video, we introduce some commonly used methods to detect PPIs and techniques for proteome-scale interactome maps.
Brief Introduction of Protein-Protein Interactions (PPIs)Creative Proteomics
For more information, please visit https://www.creative-proteomics.com/services/protein-protein-interaction-networks.htm. Protein-protein interactions play important roles in various biological processes. PPIs can be classified based on different factors, including composition, affinity, and lifetime.
Peptidomics represents a short version of “peptide proteomics", which means the comprehensive visualization and analysis of small polypeptides, thus covering the mass range between proteomics and metabonomics.
Mass Spectrometry-based Peptidomics for Biomaker DiscoveryCreative Proteomics
Biomarkers are molecules that indicate a physiological state and also the change during a disease process. In human bodies, peptidome biomarkers can be used to forecast disease, diagnose various disorders, guide clinical therapy, and monitor medicine response. The mass spectrometry-based peptidomics for biomarker discovery contains sample preparation, separation, detection and identification, quantitative evaluation, data analysis, as well as biomarkers validation.
Protein phosphorylation, a reversible process, is characterized by adding phosphate donated from ATP and removing phosphate from a phosphorylated protein substrate. For more information, please visit: https://www.creative-proteomics.com/services/phosphorylation.htm
Protein acetylation commonly has two different forms. In humans, almost (80%-90%) proteins become co-translationally acetylated at their Nα-termini of the nascent polypeptide chains. Another type is typically acetylated on lysine residues.
Mass spectrometry (MS) is the suitable method for the analysis of protein modifications because it can provide universal information about protein modifications without a priori knowledge and locating the sites of modification.
If you are interested in our services, please visit: https://www.creative-proteomics.com/services/protein-post-translational-modification-analysis.htm
Brief introduction of post-translational modifications (PTMs)Creative Proteomics
PTMs are chemical alterations to protein structure, typically catalyzed by exceedingly substrate-specific enzymes, which themselves are under strict control by PTMs. They generate a large diversity of gene products because many types of PTMs are covalently attached to amino-acid residues in each protein. For protein post-translational modification analysis at Creative Proteomics, please visit https://www.creative-proteomics.com/services/protein-post-translational-modification-analysis.htm
Glycomics, the study of glycans, is applied to biology and chemistry that focuses on the structure and function of carbohydrates, and on glycoform distributions at the cellular, tissue, organ and organism levels. Mass spectrometry plays an important role in glycomics analysis. If you want to know more, please visit https://www.creative-proteomics.com/services/glycomics-service.htm
Western blot is a commonly used method for protein analysis. It can be used for qualitative and semi-quantitative protein analysis. For the accomplishment of the western blot, there are three elements, separation of proteins by size, transferring proteins to a solid support, and marking proteins by primary and secondary antibodies for visualization.
Two-dimensional gel electrophoresis (2-DE) is considered a powerful tool for proteomics work. 2-DE separates proteins depending on two differ steps: the first one is called isoelectric focusing (IEF) which separates proteins according to isoelectric points (pI); the second step is SDS-polyacrylamide gel electrophoresis (SDS-PAGE) which separates proteins based on the molecular weights.
Our website: www.creative-proteomics.com
Membrane proteins play important roles in various cellular processes, such as cell adhesion, immune response, metabolism and signal transduction. They are popular targets for proteomics research and the common candidates for drug development. Shotgun proteomics methods are available for the identification of membrane proteins.
The de novo peptide sequencing is a method for peptide sequencing performed without prior knowledge of the amino acid sequence. It uses computational approaches to deduce the sequence of peptide directly from the experimental MS/MS spectra.This method can obtain the peptide sequences without a protein database. It can be used for un-sequenced organisms, antibodies, peptides with posttranslational modifications, and endogenous peptides.
Proteomics studies play an increasing role in the field of biology. The use of mass spectrometry (MS) in combination with a range of separation methods is the main principal methodology for proteomics. The two principal approaches to identifying and characterizing proteins using MS are the “bottom-up”, which analyze peptides by proteolytic digestion, and “top-down”, which analyze intact proteins.
Peptide mass fingerprinting is a technology to identify proteins. It is a high throughput protein identification technique in which the mass of an unknown protein can be determined. PMF is always performed with MALDI-TOF mass spectrometry
Introduction of mass spectrometer - basic types of ion sourceCreative Proteomics
As we know before, the mass spectrometry consists of three main components, the ion source, the mass analyzer, and the detector. In ion source, a sample is ionized. Today, we are going to introduce several types of ion source, which are usually used in a mass spectrometry.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
2. 01 Introduction
Dietary
Fiber
It has been studied that there are
associations between increased dietary fiber
intake and lower mortality from
cardiovascular diseases and certain types of
cancer.
Gut
Microflora
The gut microflora in the large intestine,
consisting more than 400 different species,
plays important physiological roles in human
physiology and health. Microflora has the
ability to produce hydrolytic enzymes that can
digest some of the complex carbohydrates.
3. 01 Introduction
S C F A s
When dietary fibers are fermented by the bacterial hydrolytic enzymes, the short chain
fatty acids (SCFAs) are the main products.
However, SCFAs may be generated from protein and amino acid decompositions as well.
Short Chain
Fatty Acids
4. 01 Introduction
Short chain fatty acids are defined as fatty acids with two to six carbon atoms. But the
definition varies and the upper limit may range between five and seven carbons in length.
Among SCFAs, three main types, acetic acid (C2), propionic acid (C3) and butyric acid
(C4), makes up 95% of all SCFAs.
Acetic acid Propionic acid Butyric acid
5. 01 Introduction
Function
01
02
They can be oxidized to provide energy and
have also been shown to affect the immune
system, colonic function, cholesterol
metabolism, satiety and oxidative stress.
A direct link between SCFAs (qualitatively
and quantitatively) and some human
pathological conditions, such as
inflammatory bowel disease (IBD), irritable
bowel syndrome (IBS), diarrhea and cancer
have been proposed.
6. 02 Methods
SCFAs have been measured in various biological materials such as blood plasma, serum, and feces.
Moreover, SCFAs have been detected in different environmental samples, food, waste leachates and even in
asphaltene.
In the following parts, we will focus on the SCFAs analytical methods.
7. Gas Chromatography
(GC)
• The principle of GC relies on a carrier gas
that serves as a mobile phase where sample
compounds are separated by differential
interaction with the column stationary phase.
• The pretreatment is important for the
successful detection of SCFAs by GC. There
are various methods, such as ultrafiltration,
centrifugation, acidification, or simple sample
dilution, which has its own advantages or
disadvantages.
8. Gas Chromatography
(GC)
• The flame ionization detector (FID), is
the most used conventional detector for
SCFAs detection in GC.
• It is sensitive to molecules that are
ionized in a hydrogen–air flame,
including most carbon-containing
compounds, and produces a current that
varies proportionally to the amount of
organic species in a sample.
9. Gas Chromatography
(GC)
• In addition to a conventional detector, GC can be bound to MS, causing a better
sensitivity and selectivity of the analysis.
• By using a GC-MS-MS instrument, quantitation of short-chain fatty acids that are
present in low concentrations in complex biological samples are available.
• One critical step in the GC-MS analysis of FAs is their conversion into suitable
volatile derivatives by derivatization.
10. High Performance Liquid Chromatography
(HPLC)
• The greatest advantage of the HPLC over the GC technique is the use of lower
running temperatures. And the resolved fatty acids are not destroyed during their
detection, which enables further analyses to be performed.
• Like GC, a successful SCFAs analysis by HPLC needs suitable combinations of
pretreatments, columns, running conditions and detectors.
• Due to the higher pressure, the mobile phase carrying analytes travels and the small
stationary phase particles with a larger area allow for a better interaction.
• The most commonly used technique is a reverse phase HPLC (RP-HPLC), where the
stationary solid phase (column) is hydrophobic (non-polar) and the mobile liquid
phase is hydrophilic (polar, watery).
11. Other Methods
Nuclear magnetic
resonance (NMR)
Capillary
Electrophoresis (CE)
Enzymatic detection
of SCFAs
• Advantages: fast, stable
and reprducible
• Drawbacks:
instrumentation cost and
sensitivity
• Advantages: speed and
minimal sample pretreatment
procedure.
• Drawbacks: low repeatability
and reproducibility.
• It can differentiate between
optical isomers, so the
lactate can be found in both
D- and L-form.
In addition to GC and HPLC, there are some other methods.
12. At Creative Proteomics, we have
developed a professional platform for
the identification and quantification of
short chain fatty acids by GC-MS. The
short chain fatty acids we can quantified
include acetic acid, propionic acid,
butyric acid, isobutyric acid, valeric acid,
isovaleric acid, and caproic acid.
Short Chain Fatty Acids
Analysis Services
03 Our Services
Hello, welcome to watch the creative proteomics . Today, we are going to talk about Short Chain Fatty Acids Analysis
As we know, increased intake of dietary fiber may contribute towards a healthier diet. It has been studied that there are associations between increased dietary fiber intake and lower mortality from cardiovascular diseases and certain types of cancer. And the gut microflora in the large intestine, consisting more than 400 different species, plays important physiological roles in human physiology and health. Microflora has the ability to produce hydrolytic enzymes that can digest some of the complex carbohydrates.
When dietary fibers are fermented by the bacterial hydrolytic enzymes, the short chain fatty acids (SCFAs) are the main products. However, SCFAs may be generated from protein and amino acid decompositions as well.
Short chain fatty acids are defined as fatty acids with two to six carbon atoms. But the definition varies and the upper limit may range between five and seven carbons in length. Among SCFAs, three main types, acetic acid (C2), propionic acid (C3) and butyric acid (C4), makes up 95% of all SCFAs. These SCFAs have a wide range of metabolic effects.
These SCFAs have a wide range of metabolic effects. They can be oxidized to provide energy and have also been shown to affect the immune system, colonic function, cholesterol metabolism, satiety and oxidative stress. In addition, A direct link between SCFAs (qualitatively and quantitatively) and some human pathological conditions, such as inflammatory bowel disease (IBD), irritable bowel syndrome (IBS), diarrhea and cancer have been proposed. So, there is no wonder that SCFA profiling has been a major topic in gut bacteria studies.
Gas chromatography (GC) appears to be the most commonly used quantification method of fecal SCFAs despite having some disadvantages. The principle of GC relies on a carrier gas that serves as a mobile phase where sample compounds are separated by differential interaction with the column stationary phase.The pretreatment is important for the successful detection of SCFAs by GC. There are various methods, such as ultrafiltration, centrifugation, acidification, or simple sample dilution, which has its own advantages or disadvantages.
The flame ionization detector (FID), is sensitive to molecules that are ionized in a hydrogen–air flame, including most carbon-containing compounds, and produces a current that varies proportionally to the amount of organic species in a sample, is the most used conventional detector for SCFAs detection in GC.
A great alternative to GC for SCFAs analysis is HPLC.
In addition to GC and HPLC, there are some other methods, like nuclear magnetic resonance (NMR), Capillary Electrophoresis (CE), and enzymatic detection of SCFAs. In NMR, isotope cores 1H and 13C have been used for SCFAs studies in fecal samples. It enables the production of fast, stable and reproducible profiles, but the instrumentation cost and sensitivity are the serious drawbacks. CE, which has been used to detect SCFAs in different biological materials, is convenient in routine analysis due to its speed and minimal sample pretreatment procedure. However, the disadvantages of CE include low repeatability and reproducibility. Enzymatic detection of SCFAs depends on the spectrophotometric measurement of enzymatic products obtained from SCFAs as substrates. It can differentiate between optical isomers, so the lactate can be found in both D- and L-form.
At Creatiev Proteomics, we have developed a professional platform for the Identification and quantification of short chain fatty acids by GC-MS. The short chain fatty acids we can quantified include acetic acid, propionic acid, butyric acid, isobutyric acid, valeric acid, isovaleric acid, and caproic acid. If you want to know more, please contact us.
Thanks for watching our video. At creative proteomics, we provide the most reliable Short Chain Fatty Acids Analysis services. If you have any questions or specific requirements. Please feel free to contact us. We are very glad to cooperate with you.