Shigella flexneri caused an outbreak of dysentery among children in a social welfare center in China from September to October 2015. S. flexneri serotype 2a was identified from stool samples of infected children. Pulsed-field gel electrophoresis (PFGE) analysis demonstrated that the strains from different children were genetically related. Antibiotic susceptibility testing found resistance to multiple antibiotics. Person-to-person transmission was concluded to be the mode of transmission, as no vehicle was identified to have spread the bacteria. Treatment should be guided by antibiotic susceptibility testing given the multi-drug resistant nature of the outbreak strain.