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Seminar on
New technologies of cell
and molecular biology
Moderator
Dr. D Singha
Asso prof.
Deptt of surgery
SMCH
Presenter
Biswajit Deka
3rd yr PGT
Deptt of surgery
SMCH
Introduction
• Molecular biology : The study of structure and functions of an organ/ tissue at
the molecular level to understand the molecular basis of hereditary & genetic
variation, expression patterns of genes and different physiologically active
molecules & their effects in pathophysiology of diseases ; using these
molecular & cell biology pattern in diagnostic & therapeutic modalities.
• This branch study the flow of information from DNA to RNA to protein
and overlaps with other areas, particularly genetics and biochemistry.
History
• The term molecular biology was first used in 1945 by
WILLIAM ASTBURY study of the chemical and physical
structure of biological macromolecules.
• The roost of this branch were established in 1953 by an
Englishman Francis crick and a young American James Watson
working at medical Research council unit.
Current use of molecular biology
• Understanding pathophysiology of diseases
• Diagnosis
• Transplantation / Therapeutic
• Paternity & Forensic analysis
• Gene therapy
• Drug Design
What is genome ?
• A genome is an organism’s complete set of DNA, including all
of its genes. Each genome contains all of the information needed
to build and maintain that organism.
• In humans, a copy of the entire genome—more than 3 billion
DNA base pairs—is contained in all nucleated cells.
• The diploid genome of the typical human cells contains
approx.7x10⁹ base pairs that are divided into 23 chromosomes.
The genome database
Organized in six major organism groups:
• Eukaryotes
• Bacteria
• Archaea ( organism consisting of single, nucleus free cells )
• Viruses
• Plasmids
Molecular imaging
• Non invasive imaging to characterize and quantitively measure in vivo the
key biomolecules and molecularly based events.
• It has ability to characterize diseased tissue without invasive biopsies or
surgical procedure.
• They are : PET-CT
SPECT
MRI
US
Optical imaging
• In last decade – extensive study of genetically determined
production of biomolecules by cancer cells.
• Molecular imaging probes target and highlight these specific
molecules that are expressed by individual cancer cells or
surrounding extracellular matrix and cells – T cells, macrophages,
dendritic cells, fibroblasts or endothelial cells
Diagnostic modalities
Positron Emission Tomography
• Image biological process in vivo but low spatial resolution , use of ionizing
radiation & high cost
• Uses a molecular imaging probe & a radio-pharmaceutical that targets
specific physiology –glycolysis, apoptosis, cell proliferation or receptor
expression
• radio-pharmaceutical- targeting component ( Ab, small molecule ,
peptide) and a signaling component (C-11,N-13, O-15,F-18)
In cancer cells
FDG
hexokinase
FDG-6-monophosphate
( Trapping of the metabolite within the tumour cells )
Measuring metabolic processes with PET
• DNA synthesis with nucleoside PET (labeled thymidine)
• Membrane Biosynthesis (1-[11C]-acetate or 18F-fluorocholine )
• Quantify the degree of hypoxia with 18F- Fluoromisonidazole PET
• Oxygen metabolism and blood flow (Radiolabeled [15O], H2O, CO )
• Receptor binding (DOTA-TOC in NET & Galium 68 PMSA in
prostate ca )
Limitations of FDG PET-CT
False positive
• Infection
• Inflammation
• Post surgical changes ( healing
wound, scar, stoma)
• Post radiation changes (active
fibrosis, radiation pneumonitis)
False negative results
• Small lesion (<5mm)
• Low metabolic rate ( differ. NET,
HCC, prostate, mucinous adeno ca)
• Interfering cytostatic treatments
• Suboptimal preparation ( glucose
intolerance, DM)
• Local high physiological FDG
activity ( brain , genitourinary tract )
Molecular advances in CT imaging
• Poor soft tissue delineation without contrast
• Contrast (iodinated) large amount toxicity
• Nanomaterials : eg bismuth sulfide
• CT: additional anatomical resolution for PET imaging ( PET-CT)
Molecular advances in USG imaging
• Based on detection of reflected sound pulses
• High spatial & temporal resolution, real time imaging, lack of radiation
• Development of molecularly targeted probe
• Microbubbles : contrast agents give high echogenic response – high
contrast to tissue background ratio.
 Large size – do not leave the vasculature
 So , main indication is to image angiogenic processes by targeting specific markers
on tumor vascular endothelial cells
 Microbubbles targeting VEGFR-2 : tested in prostate ca
• Non microbubbles molecular probes
• Liquid or solid colloids , 10-10,000 nanometer range
• Leave the vasculature
• so, leave leaky vasculature but non normal vessels
This augmented permeability of tumour vasculature compared
to healthy tissue is k/a Enhanced Permeability and Retention
(EPR) effect.
Molecular imaging applications for MRI
Powerful molecular imaging modality with rapidly developing novel tech.
like..
• Magnetic resonance spectroscopy
• Chemical shift imaging
• Diffusion-weighted (DW) imaging
• T1 rho weighted imaging
• Chemical exchange saturation transfer
• Targeted contrast agents
• MRI: high spatial resolution and offers excellent anatomical detail without
any ionizing radiation
• High b-value DW-MRI better detect prostate ca ( than T2 weighted MRI)
• Whole body DW-MRI : comparable with PET-CT for detection of lung ca
mets.
• DW-MRI: used to determine the aggressiveness of certain cancers
• T2 weighted contrast agents: iron oxide nanoparticles
• Superparamagnetic iron oxide nanoparticle (SPIO) can be
conjugated with specific targeting ligands and serve as molecular
imaging probe.
• They have been used to see angiogenic activity in melanoma
bearing mice and to detect LN mets in prostate ca.
• Recently Gd-based molecular MRI probes activatable by
enzymatic cleavage have been developed.
• In genetically susceptible individual – whole body MRI scan using Gd
loaded ACPPD ( activatable cell-penetrating peptides dendrimers ) may
be done at regular interval due to its sensitivity in detection of small
tumors.
• MMP have been used as enzymatic targets ( MMP 2 & 9 ) : expressed by
multiple tumor cells and correlate with invasiveness of ca cells
Intraoperative molecular imaging
Identification / visualization of tumor extent
Two approach – to differentiate diseased tissue from normal intra-op
1. Endogenous contrast or autofluorescence : of certain malignancies
enable the extent of lesion to be views by optical microscopic imaging
system.
2. External contrast agent ( fluorescent dye ) administration f/b real-
time intra-op visualization using special probe –
fluorescence molecular imaging ( FMI)
Identify tumour deposits , SLN, vasculature necessary for viability of flaps
reconstruction
Fluorescence molecular imaging ( FMI )
• Components : contrast agents and surgical navigation system
• Contrast agents:
• Indocyanine green (ICG)- mc used , SLN & hepatic micro-mets but
non specific , limited utility in margin assessment in solid tumour .
• 5-aminolevulinic acid (5-ALA) : in gliomas
• CEA ( fluorescently labeled)
• PSA
• Fluorescent optical probe targeting folate receptor– ovarian ca
• ACPP ( activatable cell-penetrating peptides) – more generic , used for
multiple tumors.
C) Endoscopic and laparoscopic
FMRI
A) Portable intraoperative FMI
systems:
 Hand held & Real time
 Eg. Photodynamic eye (PDE) or
Fluobeam
 Recently , Washington university
developed a goggle system that has
Surgical navigation system on wearable
glasses
B) Functional intraoperative
FMI systems: use multiple
cameras
 Eg. FLARE, SurgOptix, GXMI
navigator
 They are in clinical trails
surgical navigation system
Photodynamic eye
Fluobeam
Intraoperative surgical instrument compatible with NIR optical imaging
Instrument Manufacturer Intended use
FL 800 Leica Open surgery
Pentero zeiss Open surgery
EVIS Excera Olympus Endoscopy
Spy Novadaq Endoscopy / Open surgery
Ellite breast Phillips Breast imaging
Artemis O2View Endoscopy / Open surgery
fluobeam fluoptics Open surgery
SurgOptix SurgOptix Open surgery
Photoacoustic imaging
• Hybrid of optical and USG tech. involving optically excitable
molecularly targeted contrast agents and quantitative detection
of resulting oscillatory contrast agent movement with US.
• Potential use for repeated visualization of malignancies , for
eg.,to monitor effects of anti cancer therapy
Tumour specific agents
• Folate receptor-alpha targeting fluorescent agent : ovarian ca
• ASY-FITC probe- detection of early stage esophageal adeno ca
• Urokinase plasminogen activator ( uPA ): has shown potential to detect
tumour margins
• Intra-op visualization of breast ca using Bevacizumab conjugated with
IRDye 800CW (fluorescent agent)– phase 1 trial
Preclinical studies with potential of clinical translation
Therapeutic use & follow up
• Strong relationship between 18F FDG uptake and the no. of viable
cancer cells.
• Changes in the therapeutic management have been reported in 15-
40% of pts d/t findings on PET.
• Information about staging of cancer influencing nodal & distant
metastatic can be known (non-small-cellmlung ca, colorectal &
esophageal ca, breast ca, H&N ca, melanoma & lymphoma)
Follow up patients with PET-CT
• Post-treatment changes ( scar , alteration of normal anatomy)
limit the use of conventional cross sectional imaging ( CT,
MRI, US).
• Malignant cells may coexist with scar tissue – sampling error
on biopsy
• PET : more accurate than conventional imaging detecting
residual cancer
• Treatment response to bevacizumab and irinotecan, in brain
tumour has been recently performed using 18F FLT-PET
( fluorothymidine )
• EPR effect : imaging tool and treatment of solid tumors to
deliver toxic anti-cancer drugs
Mechanism Drugs / agents diseases
Anti EGFR Cetuximab , Panitumumab CRC, H&N ca
Anti HER 2 Trastuzumab
Anti VEGF Bevacizumab CRC
mTor inhibitor Temsirolimus Renal ca , NET
Blocks cytotoxic T cell asso. protein
4
Ipilumumab Melanoma
Summary
• Molecular biology involves the study of an organ/ tissue at its cellular and
molecular level to understand normal biology of cells which in turn helps
in understanding the pathophysiology of different diseases at the
molecular level and using these information in diagnostic and therapeutic
platform. It overlaps with other specialties like biochemistry and genetics.
• This branch has helped in development of different non invasive
diagnostic modalities ( CT-PET ) which are being used for screening and
follow up in different diseases, specially in cancer management.
• The development in the optical imaging modalities with signal emitting specific
and non-specific molecular probes have helped clinicians with their diagnosis
and surgeons in taking/ modifying their intraoperative decisions. It has also
helped in knowing the tumor free margins and flap vascularization
intraoperatively which has benefitted the pts and also aided in the ease of
surgery.
• The recent developments in the segments of monoclonal Ab,
immunohistochemistry and gene therapy has opened up the windows to
satisfactory management of different rare as well as common genetic diseases.
THANK YOU …

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seminar on new technologies of cell and molecular biology

  • 1. Seminar on New technologies of cell and molecular biology Moderator Dr. D Singha Asso prof. Deptt of surgery SMCH Presenter Biswajit Deka 3rd yr PGT Deptt of surgery SMCH
  • 2. Introduction • Molecular biology : The study of structure and functions of an organ/ tissue at the molecular level to understand the molecular basis of hereditary & genetic variation, expression patterns of genes and different physiologically active molecules & their effects in pathophysiology of diseases ; using these molecular & cell biology pattern in diagnostic & therapeutic modalities. • This branch study the flow of information from DNA to RNA to protein and overlaps with other areas, particularly genetics and biochemistry.
  • 3. History • The term molecular biology was first used in 1945 by WILLIAM ASTBURY study of the chemical and physical structure of biological macromolecules. • The roost of this branch were established in 1953 by an Englishman Francis crick and a young American James Watson working at medical Research council unit.
  • 4. Current use of molecular biology • Understanding pathophysiology of diseases • Diagnosis • Transplantation / Therapeutic • Paternity & Forensic analysis • Gene therapy • Drug Design
  • 5. What is genome ? • A genome is an organism’s complete set of DNA, including all of its genes. Each genome contains all of the information needed to build and maintain that organism. • In humans, a copy of the entire genome—more than 3 billion DNA base pairs—is contained in all nucleated cells. • The diploid genome of the typical human cells contains approx.7x10⁹ base pairs that are divided into 23 chromosomes.
  • 6. The genome database Organized in six major organism groups: • Eukaryotes • Bacteria • Archaea ( organism consisting of single, nucleus free cells ) • Viruses • Plasmids
  • 7. Molecular imaging • Non invasive imaging to characterize and quantitively measure in vivo the key biomolecules and molecularly based events. • It has ability to characterize diseased tissue without invasive biopsies or surgical procedure. • They are : PET-CT SPECT MRI US Optical imaging
  • 8. • In last decade – extensive study of genetically determined production of biomolecules by cancer cells. • Molecular imaging probes target and highlight these specific molecules that are expressed by individual cancer cells or surrounding extracellular matrix and cells – T cells, macrophages, dendritic cells, fibroblasts or endothelial cells
  • 10. Positron Emission Tomography • Image biological process in vivo but low spatial resolution , use of ionizing radiation & high cost • Uses a molecular imaging probe & a radio-pharmaceutical that targets specific physiology –glycolysis, apoptosis, cell proliferation or receptor expression • radio-pharmaceutical- targeting component ( Ab, small molecule , peptide) and a signaling component (C-11,N-13, O-15,F-18)
  • 11.
  • 12. In cancer cells FDG hexokinase FDG-6-monophosphate ( Trapping of the metabolite within the tumour cells )
  • 13. Measuring metabolic processes with PET • DNA synthesis with nucleoside PET (labeled thymidine) • Membrane Biosynthesis (1-[11C]-acetate or 18F-fluorocholine ) • Quantify the degree of hypoxia with 18F- Fluoromisonidazole PET • Oxygen metabolism and blood flow (Radiolabeled [15O], H2O, CO ) • Receptor binding (DOTA-TOC in NET & Galium 68 PMSA in prostate ca )
  • 14. Limitations of FDG PET-CT False positive • Infection • Inflammation • Post surgical changes ( healing wound, scar, stoma) • Post radiation changes (active fibrosis, radiation pneumonitis) False negative results • Small lesion (<5mm) • Low metabolic rate ( differ. NET, HCC, prostate, mucinous adeno ca) • Interfering cytostatic treatments • Suboptimal preparation ( glucose intolerance, DM) • Local high physiological FDG activity ( brain , genitourinary tract )
  • 15. Molecular advances in CT imaging • Poor soft tissue delineation without contrast • Contrast (iodinated) large amount toxicity • Nanomaterials : eg bismuth sulfide • CT: additional anatomical resolution for PET imaging ( PET-CT)
  • 16. Molecular advances in USG imaging • Based on detection of reflected sound pulses • High spatial & temporal resolution, real time imaging, lack of radiation • Development of molecularly targeted probe • Microbubbles : contrast agents give high echogenic response – high contrast to tissue background ratio.  Large size – do not leave the vasculature  So , main indication is to image angiogenic processes by targeting specific markers on tumor vascular endothelial cells  Microbubbles targeting VEGFR-2 : tested in prostate ca
  • 17. • Non microbubbles molecular probes • Liquid or solid colloids , 10-10,000 nanometer range • Leave the vasculature • so, leave leaky vasculature but non normal vessels This augmented permeability of tumour vasculature compared to healthy tissue is k/a Enhanced Permeability and Retention (EPR) effect.
  • 18. Molecular imaging applications for MRI Powerful molecular imaging modality with rapidly developing novel tech. like.. • Magnetic resonance spectroscopy • Chemical shift imaging • Diffusion-weighted (DW) imaging • T1 rho weighted imaging • Chemical exchange saturation transfer • Targeted contrast agents
  • 19. • MRI: high spatial resolution and offers excellent anatomical detail without any ionizing radiation • High b-value DW-MRI better detect prostate ca ( than T2 weighted MRI) • Whole body DW-MRI : comparable with PET-CT for detection of lung ca mets. • DW-MRI: used to determine the aggressiveness of certain cancers
  • 20. • T2 weighted contrast agents: iron oxide nanoparticles • Superparamagnetic iron oxide nanoparticle (SPIO) can be conjugated with specific targeting ligands and serve as molecular imaging probe. • They have been used to see angiogenic activity in melanoma bearing mice and to detect LN mets in prostate ca. • Recently Gd-based molecular MRI probes activatable by enzymatic cleavage have been developed.
  • 21. • In genetically susceptible individual – whole body MRI scan using Gd loaded ACPPD ( activatable cell-penetrating peptides dendrimers ) may be done at regular interval due to its sensitivity in detection of small tumors. • MMP have been used as enzymatic targets ( MMP 2 & 9 ) : expressed by multiple tumor cells and correlate with invasiveness of ca cells
  • 23. Identification / visualization of tumor extent Two approach – to differentiate diseased tissue from normal intra-op 1. Endogenous contrast or autofluorescence : of certain malignancies enable the extent of lesion to be views by optical microscopic imaging system. 2. External contrast agent ( fluorescent dye ) administration f/b real- time intra-op visualization using special probe – fluorescence molecular imaging ( FMI) Identify tumour deposits , SLN, vasculature necessary for viability of flaps reconstruction
  • 24. Fluorescence molecular imaging ( FMI ) • Components : contrast agents and surgical navigation system • Contrast agents: • Indocyanine green (ICG)- mc used , SLN & hepatic micro-mets but non specific , limited utility in margin assessment in solid tumour . • 5-aminolevulinic acid (5-ALA) : in gliomas • CEA ( fluorescently labeled) • PSA • Fluorescent optical probe targeting folate receptor– ovarian ca • ACPP ( activatable cell-penetrating peptides) – more generic , used for multiple tumors.
  • 25. C) Endoscopic and laparoscopic FMRI A) Portable intraoperative FMI systems:  Hand held & Real time  Eg. Photodynamic eye (PDE) or Fluobeam  Recently , Washington university developed a goggle system that has Surgical navigation system on wearable glasses B) Functional intraoperative FMI systems: use multiple cameras  Eg. FLARE, SurgOptix, GXMI navigator  They are in clinical trails surgical navigation system
  • 28. Intraoperative surgical instrument compatible with NIR optical imaging Instrument Manufacturer Intended use FL 800 Leica Open surgery Pentero zeiss Open surgery EVIS Excera Olympus Endoscopy Spy Novadaq Endoscopy / Open surgery Ellite breast Phillips Breast imaging Artemis O2View Endoscopy / Open surgery fluobeam fluoptics Open surgery SurgOptix SurgOptix Open surgery
  • 29. Photoacoustic imaging • Hybrid of optical and USG tech. involving optically excitable molecularly targeted contrast agents and quantitative detection of resulting oscillatory contrast agent movement with US. • Potential use for repeated visualization of malignancies , for eg.,to monitor effects of anti cancer therapy
  • 30. Tumour specific agents • Folate receptor-alpha targeting fluorescent agent : ovarian ca • ASY-FITC probe- detection of early stage esophageal adeno ca • Urokinase plasminogen activator ( uPA ): has shown potential to detect tumour margins • Intra-op visualization of breast ca using Bevacizumab conjugated with IRDye 800CW (fluorescent agent)– phase 1 trial
  • 31. Preclinical studies with potential of clinical translation
  • 32. Therapeutic use & follow up
  • 33. • Strong relationship between 18F FDG uptake and the no. of viable cancer cells. • Changes in the therapeutic management have been reported in 15- 40% of pts d/t findings on PET. • Information about staging of cancer influencing nodal & distant metastatic can be known (non-small-cellmlung ca, colorectal & esophageal ca, breast ca, H&N ca, melanoma & lymphoma)
  • 34. Follow up patients with PET-CT • Post-treatment changes ( scar , alteration of normal anatomy) limit the use of conventional cross sectional imaging ( CT, MRI, US). • Malignant cells may coexist with scar tissue – sampling error on biopsy • PET : more accurate than conventional imaging detecting residual cancer
  • 35. • Treatment response to bevacizumab and irinotecan, in brain tumour has been recently performed using 18F FLT-PET ( fluorothymidine ) • EPR effect : imaging tool and treatment of solid tumors to deliver toxic anti-cancer drugs
  • 36. Mechanism Drugs / agents diseases Anti EGFR Cetuximab , Panitumumab CRC, H&N ca Anti HER 2 Trastuzumab Anti VEGF Bevacizumab CRC mTor inhibitor Temsirolimus Renal ca , NET Blocks cytotoxic T cell asso. protein 4 Ipilumumab Melanoma
  • 37. Summary • Molecular biology involves the study of an organ/ tissue at its cellular and molecular level to understand normal biology of cells which in turn helps in understanding the pathophysiology of different diseases at the molecular level and using these information in diagnostic and therapeutic platform. It overlaps with other specialties like biochemistry and genetics. • This branch has helped in development of different non invasive diagnostic modalities ( CT-PET ) which are being used for screening and follow up in different diseases, specially in cancer management.
  • 38. • The development in the optical imaging modalities with signal emitting specific and non-specific molecular probes have helped clinicians with their diagnosis and surgeons in taking/ modifying their intraoperative decisions. It has also helped in knowing the tumor free margins and flap vascularization intraoperatively which has benefitted the pts and also aided in the ease of surgery. • The recent developments in the segments of monoclonal Ab, immunohistochemistry and gene therapy has opened up the windows to satisfactory management of different rare as well as common genetic diseases.